Moc05g27240 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g27240
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Integrase catalytic domain-containing protein
Location	chr5: 19652196 .. 19653516 (-)
RNA-Seq Expression	Moc05g27240
Synteny	Moc05g27240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTGCAACAGTCGATTGGTAATATGGAAACAAGCCAAACGAACATATCTGCACCATCGAGTTCCTCTATAGCAACAGAAGCAGCCGTCAATCCACTATATGAGTCATGGGTAACTACCGACCAGCTACTTCTTGGTTGGTTGTACAACTCTATGACTCCAGAAGTTGCAACACAGGTGATGGGGTGCGAAAATGCTTGTGATTTATGGGCTGCCATACAAGAACTCTTTGGAGTACAGTCTCAGGCGGAAGAAGATTATCTCCGTCAGGTATTTCAACAAACTCGAAAAGGTTCTCTTAAAATGACTGATTTTTTGCGTGTTATGAAGTCTCATGCAGACAATTTGGGTCAAGCTGGAAGCCCCGTACCCACTCGATCTTTGATTTCTCAAGTTTTGTTGGGATTAGATGAAGAGTATAATCCTGTGGTAGCAACGATCCAAGGAAAACGAGGCATTTCGTGGCCTGAAATGCAAGCCGAATTGTTGGTATTTGAGAAGAGGTTAGAACTTCAGAATTCTCATAAAAATACAGTATCTTTTAACAACTCTGTTTCTGTGAATATGGCTAATAGTAGCAGAAATGTAAGTGGTGGAAACCAACGTCAAAATCAAAACTCTCGACCACCATTCAACAACAATCGGGGGGGGGGGGGGGGGGTGGTCGAAATCGAGGTAAAGGACGGTGGAACAACAACAATAGTCGGCAAATTTGTCTGGTGTGTGGTAAACCTGGACATTCAGCACTAACGTGCTACCATCGATTTGATAAGGAGTACAGGAACAATACACAAAGTCAAGGTAAAAACTTCAATGATGACTCTAACCAGGGGGTTAACAACAACTCTGGACAAGGTACATCTTATGCCTTCACAGCAACCCAAAATAACAATCCTTTTTTGGCCAATTCAGAAACAGTGATAGACCCGAATTGGTATGTGGATAGTGGTGCTTCAAATCATGTTACCGCCGACTACAATAGTATGGTTCAACCTACTGAATATGGAGGTATGGAAAGAGCTACAGTAGGTAATGGCGATAAATTAAAAATATCTCATGTTGGCAAATCCTGTTTAGTTTCTAACGATGGGTTGATCATGCTTGAAAATGTGTTGTGCGTACCTAACATAGCTAAAAATCTAGTTAGCGTGTCTAAACTCGCTAAAGACAATAACGTATACCTTGAATTTCATGCTGATTCTTGTCTTGTAAAGGATATACGTTGGGGCAAGGTGGTGCTGAAAGGGGCTCTGAAGGATGGACTTTACTGTCTCAATATTGTTGGAGTAGTCACTGGGAGTACTTCGACTCCAGTTGA

mRNA sequence

ATGTTTGTGCAACAGTCGATTGGTAATATGGAAACAAGCCAAACGAACATATCTGCACCATCGAGTTCCTCTATAGCAACAGAAGCAGCCGTCAATCCACTATATGAGTCATGGGTAACTACCGACCAGCTACTTCTTGGTTGGTTGTACAACTCTATGACTCCAGAAGTTGCAACACAGGTGATGGGGTGCGAAAATGCTTGTGATTTATGGGCTGCCATACAAGAACTCTTTGGAGTACAGTCTCAGGCGGAAGAAGATTATCTCCGTCAGGTATTTCAACAAACTCGAAAAGGTTCTCTTAAAATGACTGATTTTTTGCGTGTTATGAAGTCTCATGCAGACAATTTGGGTCAAGCTGGAAGCCCCGTACCCACTCGATCTTTGATTTCTCAAGTTTTGTTGGGATTAGATGAAGAGTATAATCCTGTGGTAGCAACGATCCAAGGAAAACGAGGCATTTCGTGGCCTGAAATGCAAGCCGAATTGTTGGTATTTGAGAAGAGGAACAATACACAAAGTCAAGGTAAAAACTTCAATGATGACTCTAACCAGGGGGTTAACAACAACTCTGGACAAGGTACATCTTATGCCTTCACAGCAACCCAAAATAACAATCCTTTTTTGGCCAATTCAGAAACAGTGATAGACCCGAATTGGTATGTGGATAGTGGTGCTTCAAATCATGTTACCGCCGACTACAATAGTATGGTTCAACCTACTGAATATGGAGGTATGGAAAGAGCTACAGTAGGATATACGTTGGGGCAAGGTGGTGCTGAAAGGGGCTCTGAAGGATGGACTTTACTGTCTCAATATTGTTGGAGTAGTCACTGGGAGTACTTCGACTCCAGTTGA

Coding sequence (CDS)

ATGTTTGTGCAACAGTCGATTGGTAATATGGAAACAAGCCAAACGAACATATCTGCACCATCGAGTTCCTCTATAGCAACAGAAGCAGCCGTCAATCCACTATATGAGTCATGGGTAACTACCGACCAGCTACTTCTTGGTTGGTTGTACAACTCTATGACTCCAGAAGTTGCAACACAGGTGATGGGGTGCGAAAATGCTTGTGATTTATGGGCTGCCATACAAGAACTCTTTGGAGTACAGTCTCAGGCGGAAGAAGATTATCTCCGTCAGGTATTTCAACAAACTCGAAAAGGTTCTCTTAAAATGACTGATTTTTTGCGTGTTATGAAGTCTCATGCAGACAATTTGGGTCAAGCTGGAAGCCCCGTACCCACTCGATCTTTGATTTCTCAAGTTTTGTTGGGATTAGATGAAGAGTATAATCCTGTGGTAGCAACGATCCAAGGAAAACGAGGCATTTCGTGGCCTGAAATGCAAGCCGAATTGTTGGTATTTGAGAAGAGGAACAATACACAAAGTCAAGGTAAAAACTTCAATGATGACTCTAACCAGGGGGTTAACAACAACTCTGGACAAGGTACATCTTATGCCTTCACAGCAACCCAAAATAACAATCCTTTTTTGGCCAATTCAGAAACAGTGATAGACCCGAATTGGTATGTGGATAGTGGTGCTTCAAATCATGTTACCGCCGACTACAATAGTATGGTTCAACCTACTGAATATGGAGGTATGGAAAGAGCTACAGTAGGATATACGTTGGGGCAAGGTGGTGCTGAAAGGGGCTCTGAAGGATGGACTTTACTGTCTCAATATTGTTGGAGTAGTCACTGGGAGTACTTCGACTCCAGTTGA

Protein sequence

MFVQQSIGNMETSQTNISAPSSSSIATEAAVNPLYESWVTTDQLLLGWLYNSMTPEVATQVMGCENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAELLVFEKRNNTQSQGKNFNDDSNQGVNNNSGQGTSYAFTATQNNNPFLANSETVIDPNWYVDSGASNHVTADYNSMVQPTEYGGMERATVGYTLGQGGAERGSEGWTLLSQYCWSSHWEYFDSS

Homology

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BLAST of Moc05g27240 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 318.9 bits (816), Expect = 4.4e-83
Identity = 169/194 (87.11%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 1   MFVQQSIGNMETSQTNISAPSSSSIATEAAVNPLYESWVTTDQLLLGWLYNSMTPEVATQ 60
           MFVQQSIGNMETSQTNISAPSSSSIATEAA+NPLYESWVTTDQLLLGWLYNSMTPEVATQ
Sbjct: 1   MFVQQSIGNMETSQTNISAPSSSSIATEAAINPLYESWVTTDQLLLGWLYNSMTPEVATQ 60

Query: 61  VMGCENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQA 120
           VMG ENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQA
Sbjct: 61  VMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQA 120

Query: 121 GSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAELLVFEKRNNTQSQGKNFN 180
           GSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAE       N  Q      N
Sbjct: 121 GSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAEFRSVSGGNQRQ------N 180

Query: 181 DDSNQGVNNNSGQG 195
            +S    NNN G G
Sbjct: 181 QNSQPPFNNNRGGG 188

[Close]

BLAST of Moc05g27240 vs. NCBI nr
Match: KAA0057475.1 (uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK30171.1 uncharacterized protein E5676_scaffold216G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 229.9 bits (585), Expect = 2.7e-56
Identity = 130/243 (53.50%), Postives = 162/243 (66.67%), Query Frame = 0


Query: 21  SSSSIATEAAVNPLYESWVTTDQLLLGWLYNSMTPEVATQVMGCENACDLWAAIQELFGV 80
           SSS+      VNP YE WVT+D LLLG +YNSM P+VA Q+MG   A DLW AIQ LFG+
Sbjct: 55  SSSTSMNSKIVNPKYEQWVTSDMLLLGLIYNSMVPDVALQLMGFNTAKDLWEAIQNLFGI 114

Query: 81  QSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEE 140
           +S+AEE +LR  FQ TR+G+ KM D+LR+MK +ADNLGQAGSPVP R LISQVLLGLDE 
Sbjct: 115 KSRAEEYFLRHTFQTTREGNYKMEDYLRIMKINADNLGQAGSPVPHRYLISQVLLGLDEV 174

Query: 141 YNPVVATIQGKRGISWPEMQAELLVFEK---------RNNTQSQGKNFNDDSNQGV--NN 200
           YNPV A IQGK  ISW +MQ+ELL+FE           + T     +  ++ N+G   N 
Sbjct: 175 YNPVTAVIQGKPDISWLDMQSELLIFENLVEIVLIKMESETILMAADVVEEENRGFNPNQ 234

Query: 201 NSGQGTSYAFTATQNNNPFLANSETVIDPNWYVDSGASNHVTADYNSMVQPTEYGGMERA 253
           N  Q    AF  TQ ++  LA  ETV+D N YVDSGA+NHVT+D++++    +Y G E  
Sbjct: 235 NGKQIPDDAFITTQKSSS-LATPETVVDTNRYVDSGATNHVTSDHSNLWNIDDYSGNENV 294

[Close]

BLAST of Moc05g27240 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 225.3 bits (573), Expect = 6.5e-55
Identity = 149/348 (42.82%), Postives = 180/348 (51.72%), Query Frame = 0


Query: 1   MFVQQSIGN-----------METSQTNISAPSSSSIATEAAVNPLYESWVTTDQLLLGWL 60
           MF+Q +IG               S    S   +SS  T   VNP YESW+  DQLLLGWL
Sbjct: 1   MFLQSAIGESIPIGSTGAGAAPRSIKGSSGSGASSSLTALEVNPQYESWMAVDQLLLGWL 60

Query: 61  YNSMTPEVATQVMGCENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRV 120
           YNSMTPEVA QVMGCE A DLW +I +LFGVQS+ EEDYLR VFQ TRKG+LKM ++L+ 
Sbjct: 61  YNSMTPEVAIQVMGCECAKDLWTSIPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQT 120

Query: 121 MKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAELLVFEKR 180
           MK + DNL QAGSP+P R+L+SQVLLGLDEEYN +VA IQG+  +SW +MQ+ELL++E+R
Sbjct: 121 MKMNTDNLEQAGSPMPPRTLVSQVLLGLDEEYNAIVAMIQGRVDMSWLDMQSELLLYERR 180

Query: 181 NNTQSQGK---NFNDDSNQGVN-------------NNSGQGTS----------------- 240
              QS  K    FN  SN  VN             N+S Q                    
Sbjct: 181 LEHQSNQKTTVGFNQISNASVNMTNTRHVNQNNKTNSSNQSIGGGQRGGGGHGRGRGRGR 240

Query: 241 ------------------YAF---------------------TATQN------------- 253
                             Y F                       T+N             
Sbjct: 241 NNKKPVCQVCGKVGHIAFYCFNRYSRDFVPNSPQNKVEPFPNNQTKNTQPHPTALAIAYG 300

[Close]

BLAST of Moc05g27240 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 224.9 bits (572), Expect = 8.6e-55
Identity = 135/290 (46.55%), Postives = 172/290 (59.31%), Query Frame = 0


Query: 15  TNISAPSSSSIATEAAVNPLYESWVTTDQLLLGWLYNSMTPEVATQVMGCENACDLWAAI 74
           TNI   +SS   +   +NP YE+W+  D+LLLGWLYNSM  +VA QVMG   + +LW A+
Sbjct: 82  TNIEGSTSSQ--SSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRELWTAV 141

Query: 75  QELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVL 134
           QELFGVQS+AE DYL+QVFQQT KGSL+M ++L++MKSHADNL  AGS V  R L+SQVL
Sbjct: 142 QELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDLVSQVL 201

Query: 135 LGLDEEYNPVVATIQGKRGISWPEMQAELLVFEKR-------------NNTQSQGKNFND 194
            GLDEEYNP+V  +QGK  +SW EM AELL +EKR             N TQ+   N+ D
Sbjct: 202 TGLDEEYNPIVVAVQGKVNLSWSEMHAELLTYEKRLEYQNSLKSGIPINQTQTPSVNYVD 261

Query: 195 ----DSNQGVNN-------NSGQGTSYAFTA------------TQNNNPFLANS------ 252
                +NQ  NN       N+ +G  Y   +            TQ+ N   +NS      
Sbjct: 262 GRSFQTNQRTNNGNNSHGSNTHRGGGYQRGSFGQRNRGRGPQPTQHKNFTPSNSGPNVFA 321

[Close]

BLAST of Moc05g27240 vs. NCBI nr
Match: XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-54
Identity = 147/341 (43.11%), Postives = 178/341 (52.20%), Query Frame = 0


Query: 1   MFVQQSIGN-----------METSQTNISAPSSSSIATEAAVNPLYESWVTTDQLLLGWL 60
           MF+Q +IG               S    S   +SS  T   VNP YESW+  DQLLLGWL
Sbjct: 1   MFLQSAIGESIPIGSTGAGAAPRSIKGSSGSGASSSLTALEVNPQYESWMAVDQLLLGWL 60

Query: 61  YNSMTPEVATQVMGCENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRV 120
           YNSMTPEVA QVMGCE A DLW +I +LFGVQS+ EEDYLR VFQ TRKG+LKM ++L+ 
Sbjct: 61  YNSMTPEVAIQVMGCECAKDLWTSIPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQT 120

Query: 121 MKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAELLVFEKR 180
           MK + DNL QAGSP+P R+L+SQVLLGLDEEYN +VA IQG+  +SW +MQ+ELL++E+R
Sbjct: 121 MKMNTDNLEQAGSPMPPRTLVSQVLLGLDEEYNAIVAMIQGRVDMSWLDMQSELLLYERR 180

Query: 181 NNTQSQGK---NFNDDSNQGVN-------------NNSGQGTS----------------- 240
              QS  K    FN  SN  VN             N+S Q                    
Sbjct: 181 LEHQSNQKTTVGFNQISNASVNMTNTRHVNQNNKTNSSNQSIGGGQRGGGGHGRGRGRGR 240

Query: 241 ------------------YAF---------------------TATQN------------- 246
                             Y F                       T+N             
Sbjct: 241 NNKKPVCQVCGKVGHIAFYCFNRYSRDFVPNSPQNKVEPFPNNQTKNTQPHPTALAIAYG 300

[Close]

BLAST of Moc05g27240 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 2.1e-83
Identity = 169/194 (87.11%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 1   MFVQQSIGNMETSQTNISAPSSSSIATEAAVNPLYESWVTTDQLLLGWLYNSMTPEVATQ 60
           MFVQQSIGNMETSQTNISAPSSSSIATEAA+NPLYESWVTTDQLLLGWLYNSMTPEVATQ
Sbjct: 1   MFVQQSIGNMETSQTNISAPSSSSIATEAAINPLYESWVTTDQLLLGWLYNSMTPEVATQ 60

Query: 61  VMGCENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQA 120
           VMG ENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQA
Sbjct: 61  VMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQA 120

Query: 121 GSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAELLVFEKRNNTQSQGKNFN 180
           GSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAE       N  Q      N
Sbjct: 121 GSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAEFRSVSGGNQRQ------N 180

Query: 181 DDSNQGVNNNSGQG 195
            +S    NNN G G
Sbjct: 181 QNSQPPFNNNRGGG 188

[Close]

BLAST of Moc05g27240 vs. ExPASy TrEMBL
Match: A0A5D3E3L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001590 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.3e-56
Identity = 130/243 (53.50%), Postives = 162/243 (66.67%), Query Frame = 0


Query: 21  SSSSIATEAAVNPLYESWVTTDQLLLGWLYNSMTPEVATQVMGCENACDLWAAIQELFGV 80
           SSS+      VNP YE WVT+D LLLG +YNSM P+VA Q+MG   A DLW AIQ LFG+
Sbjct: 55  SSSTSMNSKIVNPKYEQWVTSDMLLLGLIYNSMVPDVALQLMGFNTAKDLWEAIQNLFGI 114

Query: 81  QSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEE 140
           +S+AEE +LR  FQ TR+G+ KM D+LR+MK +ADNLGQAGSPVP R LISQVLLGLDE 
Sbjct: 115 KSRAEEYFLRHTFQTTREGNYKMEDYLRIMKINADNLGQAGSPVPHRYLISQVLLGLDEV 174

Query: 141 YNPVVATIQGKRGISWPEMQAELLVFEK---------RNNTQSQGKNFNDDSNQGV--NN 200
           YNPV A IQGK  ISW +MQ+ELL+FE           + T     +  ++ N+G   N 
Sbjct: 175 YNPVTAVIQGKPDISWLDMQSELLIFENLVEIVLIKMESETILMAADVVEEENRGFNPNQ 234

Query: 201 NSGQGTSYAFTATQNNNPFLANSETVIDPNWYVDSGASNHVTADYNSMVQPTEYGGMERA 253
           N  Q    AF  TQ ++  LA  ETV+D N YVDSGA+NHVT+D++++    +Y G E  
Sbjct: 235 NGKQIPDDAFITTQKSSS-LATPETVVDTNRYVDSGATNHVTSDHSNLWNIDDYSGNENV 294

[Close]

BLAST of Moc05g27240 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 4.1e-55
Identity = 135/290 (46.55%), Postives = 172/290 (59.31%), Query Frame = 0


Query: 15  TNISAPSSSSIATEAAVNPLYESWVTTDQLLLGWLYNSMTPEVATQVMGCENACDLWAAI 74
           TNI   +SS   +   +NP YE+W+  D+LLLGWLYNSM  +VA QVMG   + +LW A+
Sbjct: 82  TNIEGSTSSQ--SSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRELWTAV 141

Query: 75  QELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVL 134
           QELFGVQS+AE DYL+QVFQQT KGSL+M ++L++MKSHADNL  AGS V  R L+SQVL
Sbjct: 142 QELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDLVSQVL 201

Query: 135 LGLDEEYNPVVATIQGKRGISWPEMQAELLVFEKR-------------NNTQSQGKNFND 194
            GLDEEYNP+V  +QGK  +SW EM AELL +EKR             N TQ+   N+ D
Sbjct: 202 TGLDEEYNPIVVAVQGKVNLSWSEMHAELLTYEKRLEYQNSLKSGIPINQTQTPSVNYVD 261

Query: 195 ----DSNQGVNN-------NSGQGTSYAFTA------------TQNNNPFLANS------ 252
                +NQ  NN       N+ +G  Y   +            TQ+ N   +NS      
Sbjct: 262 GRSFQTNQRTNNGNNSHGSNTHRGGGYQRGSFGQRNRGRGPQPTQHKNFTPSNSGPNVFA 321

[Close]

BLAST of Moc05g27240 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-54
Identity = 140/319 (43.89%), Postives = 172/319 (53.92%), Query Frame = 0


Query: 22  SSSIATEAAVNPLYESWVTTDQLLLGWLYNSMTPEVATQVMGCENACDLWAAIQELFGVQ 81
           +SS  T   VN L+E WVTTD LLLGWLYNSMTP+VA Q+MG  N  DLW A Q+ FGVQ
Sbjct: 92  ASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQ 151

Query: 82  SQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEY 141
           S+AEED+LRQ+ Q TRKG+ KM ++L VMK++ DNLGQ GSPVP R+LISQVLLGLDE Y
Sbjct: 152 SRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSPVPRRALISQVLLGLDEVY 211

Query: 142 NPVVATIQGKRGISWPEMQAELLVFE---KRNNTQSQGK--------------------- 201
           N V+  IQGK  ISW +MQ++LL+FE   K  NTQ + K                     
Sbjct: 212 NLVIVVIQGKPDISWLDMQSKLLIFEKILKHQNTQKKKKKKGNITQSPALNMAQRFALNG 271

Query: 202 ----------------------NFND-------------------------------DSN 261
                                 N N+                               D N
Sbjct: 272 QRNHSNKKFYGYNRQHFSGQRGNLNNGPTCQLCGKYGHSALVCYNRFNKEFSSPLVQDRN 331

Query: 262 QGVNNNSGQGTSYAFTATQNNNPFLANSETVIDPNWYVDSGASNHVTADYNSMVQPTEYG 264
           +  +N S       F +TQN  PF A  +TV+DPNWY+DSGA+NHVT + ++M  PTEY 
Sbjct: 332 EHSSNGSVSPNPAVFVSTQNATPF-ATPDTVVDPNWYIDSGATNHVTRECSNMTNPTEYS 391

[Close]

BLAST of Moc05g27240 vs. ExPASy TrEMBL
Match: A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.8e-43
Identity = 112/242 (46.28%), Postives = 138/242 (57.02%), Query Frame = 0


Query: 22  SSSIATEAAVNPLYESWVTTDQLLLGWLYNSMTPEVATQVMGCENACDLWAAIQELFGVQ 81
           +SS  T   VN L+E WVTTD LLLGWLYNSMTP+VA Q+MG  N  DLW A Q+ FGVQ
Sbjct: 92  ASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQ 151

Query: 82  SQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEY 141
           S+AEED+LRQ+ Q TRKG+ KM ++L VMK++ DNLGQ GSPVP R+LISQ         
Sbjct: 152 SRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSPVPRRALISQT-------- 211

Query: 142 NPVVATIQGKRGISWPEMQAELLVFEKRNNTQSQGKNFNDDSNQGVNNNSGQGTSYAFTA 201
                                   F+       Q  N     N+  +N S       F +
Sbjct: 212 -----------------------TFQWAARKSQQWTNMPIMWNEHSSNGSVSPNPAVFVS 271

Query: 202 TQNNNPFLANSETVIDPNWYVDSGASNHVTADYNSMVQPTEYGGMERATVGYTLGQGGAE 261
           TQN  PF A  +TV+DPNWY+DSGA+NHVT + ++M  PTEY G      G TL +G   
Sbjct: 272 TQNATPF-ATPDTVVDPNWYIDSGATNHVTRECSNMTNPTEYSGQ---IYGETLLRGTLR 298

Query: 262 RG 264
            G
Sbjct: 332 DG 298

[Close]

BLAST of Moc05g27240 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 1.7e-05
Identity = 29/117 (24.79%), Postives = 56/117 (47.86%), Query Frame = 0


Query: 37  SWVTTDQLLLGWLYNSMTP-EVATQVMGCENACDLWAAIQELFGVQSQAEEDYLRQVFQQ 96
           +W   D ++   LY ++TP +     +    + D+W  I+  F     A    L    + 
Sbjct: 64  NWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRT 123

Query: 97  TRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKR 153
              G +++ D+ R MK  AD+L     PV  R+L+  VL GL+ +++ ++  I+ ++
Sbjct: 124 KDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQ 180

The following BLAST results are available for this feature:

BLAST of Moc05g27240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148963.1	4.4e-83	87.11	uncharacterized protein LOC111017501 [Momordica charantia]	[more]
KAA0057475.1	2.7e-56	53.50	uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK...	[more]
XP_038905164.1	6.5e-55	42.82	uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]	[more]
XP_022151683.1	8.6e-55	46.55	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_038905161.1	1.9e-54	43.11	uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]	[more]

BLAST of Moc05g27240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g27240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5J0	2.1e-83	87.11	uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5D3E3L7	1.3e-56	53.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1DCW4	4.1e-55	46.55	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5A7SIT7	1.6e-54	43.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BCH9	2.8e-43	46.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Moc05g27240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	1.7e-05	24.79	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 38..171 e-value: 4.4E-13 score: 49.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..196
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 27..252
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 27..252

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g27240.1	Moc05g27240.1	mRNA