Moc05g26440 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g26440
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotran_gag_3 domain-containing protein
Location	chr5: 18894710 .. 18895015 (-)
RNA-Seq Expression	Moc05g26440
Synteny	Moc05g26440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACGTTCTTCTGCTTCTCGTTCTTCTTCTTCCAACTCTCAGGGAAAGAAGAAAGAACGTCTTTGCACTCATTGTGGACTTCATGGCCACATAGTGGATCGTTGTTACAAACTTCGTGGATATCCACTTGGCTATCTAACTACCAGCGGTCGCAATTTCTCCTCATCGCCTCTTTCCAAAACGATCAATACTTCTTCGGAGTCTTCGTCTGTTTCTTCACCTGTTCCTGATTCTTTGGCTGGTCTTAATGCTGAACAGTGCCAAGGCCTATTAAGTCTGCTACACGCACCAGTCCAAAGCTAA

mRNA sequence

ATGGCACGTTCTTCTGCTTCTCGTTCTTCTTCTTCCAACTCTCAGGGAAAGAAGAAAGAACGTCTTTGCACTCATTGTGGACTTCATGGCCACATAGTGGATCGTTGTTACAAACTTCGTGGATATCCACTTGGCTATCTAACTACCAGCGGTCGCAATTTCTCCTCATCGCCTCTTTCCAAAACGATCAATACTTCTTCGGAGTCTTCGTCTGTTTCTTCACCTGTTCCTGATTCTTTGGCTGGTCTTAATGCTGAACAGTGCCAAGGCCTATTAAGTCTGCTACACGCACCAGTCCAAAGCTAA

Coding sequence (CDS)

ATGGCACGTTCTTCTGCTTCTCGTTCTTCTTCTTCCAACTCTCAGGGAAAGAAGAAAGAACGTCTTTGCACTCATTGTGGACTTCATGGCCACATAGTGGATCGTTGTTACAAACTTCGTGGATATCCACTTGGCTATCTAACTACCAGCGGTCGCAATTTCTCCTCATCGCCTCTTTCCAAAACGATCAATACTTCTTCGGAGTCTTCGTCTGTTTCTTCACCTGTTCCTGATTCTTTGGCTGGTCTTAATGCTGAACAGTGCCAAGGCCTATTAAGTCTGCTACACGCACCAGTCCAAAGCTAA

Protein sequence

MARSSASRSSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLHAPVQS

Homology

[Close]

BLAST of Moc05g26440 vs. NCBI nr
Match: XP_022150305.1 (uncharacterized protein LOC111018505 [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-15
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 1   MARSSASRS-----SSSNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNF 60
           MAR+S+S       S+S+S  KKK++  CTHCGL GH VDRCYKL GYP GY T+  RN 
Sbjct: 1   MARNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSRNN 60

Query: 61  SSSPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLHA 98
           SS   S T ++    SS SS +PDSL  L+ +QCQGLL LL +
Sbjct: 61  SSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLFLLQS 103

[Close]

BLAST of Moc05g26440 vs. NCBI nr
Match: XP_022148562.1 (uncharacterized protein LOC111017196 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 6.0e-11
Identity = 43/99 (43.43%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 1   MARSSASRSSSSNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPL 60
           ++ SS S + S ++QGK+KE+ +CTHC L  H VDRCYKL GYP GY  ++ R    SP 
Sbjct: 208 LSNSSTSSNRSLSNQGKRKEKSMCTHCXLLXHTVDRCYKLHGYPPGYRNSNARGTHPSPA 267

Query: 61  -SKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLHA 98
            +K+ + +S++++    +PDSL+ +NA+QC GL ++L +
Sbjct: 268 PAKSADATSKNTAA---IPDSLSHINADQCXGLXAILQS 303

[Close]

BLAST of Moc05g26440 vs. NCBI nr
Match: XP_022141216.1 (uncharacterized protein LOC111011669 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 1   MARSSASRSSS-SNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTT--SGRNFSS 60
           +AR+SAS +++ ++SQ ++KER  CTHC L GH VDRCYKL GYP G+ +T  S  + S 
Sbjct: 60  LARTSASSNNTRASSQPRRKERPYCTHCHLQGHTVDRCYKLHGYPPGFRSTSKSXNSSSK 119

Query: 61  SPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLHAPVQS 102
           SP+  T  ++  SS  SS   DSL+   A+Q QGLL+ L + + S
Sbjct: 120 SPIDATNQSAXTSSVASSSNADSLSNYXADQFQGLLTFLQSHLAS 164

[Close]

BLAST of Moc05g26440 vs. NCBI nr
Match: XP_022158788.1 (uncharacterized protein LOC111025254 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-09
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 2   ARSSASRSSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGR-NFSSSPLS 61
           +RS  S +SS +   KK + +CTHCG+ GH  D+CY+L GYP G+     + +FS+S  S
Sbjct: 96  SRSPTSTTSSGSQANKKDKPVCTHCGIIGHTTDKCYQLHGYPPGHRFYGQKSSFSNSSNS 155

Query: 62  KTINTSSES-SSVSSPVPDSLAGLNAEQCQGLLSLL 96
           ++ + S +S SS+SS   DSLA   A+QCQGLL+LL
Sbjct: 156 RSNSESVKSASSLSSNSLDSLASFTADQCQGLLTLL 191

[Close]

BLAST of Moc05g26440 vs. NCBI nr
Match: XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-08
Identity = 45/100 (45.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 2   ARSSASR--SSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPL 61
           + SS SR  SSS++   +K + LCTHCG++GH VD+CYKL  YP GY ++  +  SS+  
Sbjct: 254 SNSSNSRLNSSSASHMKRKDKSLCTHCGIYGHTVDKCYKLHEYPPGYRSSVHKTTSSNAT 313

Query: 62  -SKTINTSSES-SSVSSPVPDSLAGLNAEQCQGLLSLLHA 98
            S++    S+S S+  S + +SLA L A+QCQ LL+LL +
Sbjct: 314 SSRSAEAPSKSVSATPSGISNSLATLTADQCQRLLTLLQS 353

[Close]

BLAST of Moc05g26440 vs. ExPASy TrEMBL
Match: A0A6J1D849 (uncharacterized protein LOC111018505 OS=Momordica charantia OX=3673 GN=LOC111018505 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 1   MARSSASRS-----SSSNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNF 60
           MAR+S+S       S+S+S  KKK++  CTHCGL GH VDRCYKL GYP GY T+  RN 
Sbjct: 1   MARNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSRNN 60

Query: 61  SSSPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLHA 98
           SS   S T ++    SS SS +PDSL  L+ +QCQGLL LL +
Sbjct: 61  SSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLFLLQS 103

[Close]

BLAST of Moc05g26440 vs. ExPASy TrEMBL
Match: A0A6J1D5E3 (uncharacterized protein LOC111017196 OS=Momordica charantia OX=3673 GN=LOC111017196 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-11
Identity = 43/99 (43.43%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 1   MARSSASRSSSSNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPL 60
           ++ SS S + S ++QGK+KE+ +CTHC L  H VDRCYKL GYP GY  ++ R    SP 
Sbjct: 208 LSNSSTSSNRSLSNQGKRKEKSMCTHCXLLXHTVDRCYKLHGYPPGYRNSNARGTHPSPA 267

Query: 61  -SKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLHA 98
            +K+ + +S++++    +PDSL+ +NA+QC GL ++L +
Sbjct: 268 PAKSADATSKNTAA---IPDSLSHINADQCXGLXAILQS 303

[Close]

BLAST of Moc05g26440 vs. ExPASy TrEMBL
Match: A0A6J1CIG1 (uncharacterized protein LOC111011669 OS=Momordica charantia OX=3673 GN=LOC111011669 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.4e-11
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 1   MARSSASRSSS-SNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTT--SGRNFSS 60
           +AR+SAS +++ ++SQ ++KER  CTHC L GH VDRCYKL GYP G+ +T  S  + S 
Sbjct: 60  LARTSASSNNTRASSQPRRKERPYCTHCHLQGHTVDRCYKLHGYPPGFRSTSKSXNSSSK 119

Query: 61  SPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLHAPVQS 102
           SP+  T  ++  SS  SS   DSL+   A+Q QGLL+ L + + S
Sbjct: 120 SPIDATNQSAXTSSVASSSNADSLSNYXADQFQGLLTFLQSHLAS 164

[Close]

BLAST of Moc05g26440 vs. ExPASy TrEMBL
Match: A0A6J1DX32 (uncharacterized protein LOC111025254 OS=Momordica charantia OX=3673 GN=LOC111025254 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 2   ARSSASRSSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGR-NFSSSPLS 61
           +RS  S +SS +   KK + +CTHCG+ GH  D+CY+L GYP G+     + +FS+S  S
Sbjct: 96  SRSPTSTTSSGSQANKKDKPVCTHCGIIGHTTDKCYQLHGYPPGHRFYGQKSSFSNSSNS 155

Query: 62  KTINTSSES-SSVSSPVPDSLAGLNAEQCQGLLSLL 96
           ++ + S +S SS+SS   DSLA   A+QCQGLL+LL
Sbjct: 156 RSNSESVKSASSLSSNSLDSLASFTADQCQGLLTLL 191

[Close]

BLAST of Moc05g26440 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-08
Identity = 45/100 (45.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 2   ARSSASR--SSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPL 61
           + SS SR  SSS++   +K + LCTHCG++GH VD+CYKL  YP GY ++  +  SS+  
Sbjct: 254 SNSSNSRLNSSSASHMKRKDKSLCTHCGIYGHTVDKCYKLHEYPPGYRSSVHKTTSSNAT 313

Query: 62  -SKTINTSSES-SSVSSPVPDSLAGLNAEQCQGLLSLLHA 98
            S++    S+S S+  S + +SLA L A+QCQ LL+LL +
Sbjct: 314 SSRSAEAPSKSVSATPSGISNSLATLTADQCQRLLTLLQS 353

The following BLAST results are available for this feature:

BLAST of Moc05g26440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150305.1	4.0e-15	53.40	uncharacterized protein LOC111018505 [Momordica charantia]	[more]
XP_022148562.1	6.0e-11	43.43	uncharacterized protein LOC111017196 [Momordica charantia]	[more]
XP_022141216.1	1.7e-10	46.67	uncharacterized protein LOC111011669 [Momordica charantia]	[more]
XP_022158788.1	2.5e-09	46.88	uncharacterized protein LOC111025254 [Momordica charantia]	[more]
XP_022154919.1	2.1e-08	45.00	uncharacterized protein LOC111022065 [Momordica charantia]	[more]

BLAST of Moc05g26440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g26440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D849	1.9e-15	53.40	uncharacterized protein LOC111018505 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1D5E3	2.9e-11	43.43	uncharacterized protein LOC111017196 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1CIG1	8.4e-11	46.67	uncharacterized protein LOC111011669 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1DX32	1.2e-09	46.88	uncharacterized protein LOC111025254 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DNP7	1.0e-08	45.00	uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Moc05g26440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..78
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 4..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g26440.1	Moc05g26440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding