Moc05g25270 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g25270
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RNase H domain-containing protein
Location	chr5: 17938513 .. 17941798 (+)
RNA-Seq Expression	Moc05g25270
Synteny	Moc05g25270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCGCGCCGCCGGAGCCGCTGTGCGCTGTCACCGTTGGTTCGTCGAGCGCCGCCGCCGGCTGGGTTCGAGGAGACGCCGTCGCCGCTGGTTCGAGGAACGCCGGCCGCTGCTGCTACGGGTTCGCCGGATGGAGAAGCGCCACCGATCGCCGCTGTTGCCGTGGGTCGTCGCCGGAGAAAAAAAAACAGGGGAGGCCGGCGGCTGGGGTGAGGGGTGAAGAAGAAGAAGACCTAGGGTTTGTTTTAATCTCCTTTTCTTTTGTTTATTTTATTTATTCTACAATTAAACCAAAAAAAAACCCACATCTTATTCTTGAAGGTGGCCCAACTAAATAACACAATGACCCAAAACAAAAGCCCAATAATTATACTTTAGAAATGAAAATAAACCCCACAAAAAAAAACCTGAAATAAAATAGTTAACTTAAATCTTAAAACCCAAGAATAATAATTCAAAGAAAAGTAGAATTTAGGAAGGAAAATCCTAAAACTCGTGAATTTAGAATTTAACTAAAAATCTCCTACACAGGTTGAGAACTTAAATTATCTTAATCCAAAGAAATTAAACTTAATTCTAATTTAGCCAAAAATTAGAATTTCAAAGTTAGAAAATCCAAGAATTAAAGTTATCAACTTAGGGAAAAATCCAAAGACACTATTTATCTGTTAAAATAAACGAGTCAGAGAACGCGGGGCGTTACACTTTGTGTAACTTCTCTGTTTTTGCTGTGTTTCAACAAAAACAGAAAGATGACGTGGGGAGTTACCCCACGTCAATAATAACCCCCACTCCCCTGAAATTAAGTAGGAGAGTGATTTATTAATTTAATATTAATTAAATAAATATTAATCAAATTAATATAAATAATAAATAATATATATATAATTAATTAATCTTATTAATTAATTAATTATTAATCTAATTAACAATTAATTAATCAATTATGTATATTGTTTTACAAGAAATCTGACCGTCTCCAAGCTTCAGCTTGTCGAGGATGAGCTAGGTGATGGACTTCAGATGTTGCACGAAGGACTGCAAAACAGAGTAACAGGCTCCGATGCTAAAGTCAGTAAATGCTCAAGTCGATTCTAGAGAGAATTGGCTGGATTGCGTACCTGAAAATGAAGCAATATGATCCTATTTATAGGCGTAATACCGGACAGGGTTCCCGACAATGTCTCACGGCTCTTTAAGGTCGCCGTACGATATGCGTGCTGTCGTGAAGTTTGTCGGATAAAGGACCGAGCTGAGGTAACCCAAGGTGCATTTTTAGTCGGCTCGGCATGTATAGCTACTCGACTCAGCATGAGATATCATAGCCGAAGCAAACATTTCTCACATAGAAGACACGTCTATGGCCGTTGTTCCAACCATAATGTGCCACGTGTAAGTTGAGAACTCACCTCCAACATTGGTCCCCACTGTGTTGAGCCACCATGTCGGCTCAGCTCAGGCCAATAATAAGGAAGACGACCCACAGCCCGTCTGAACAGTCATGGACGGAATATGAAACGTCGAGTTGATGTATGATGACGTCACGTACCACTCGGCGAGATCAAATCTAGGCCTTTGATTTCAAAATGGACAAACGGCGGAGATGGACTTCTTATTTTCTATAAATAGGAAGACTCGTTCTTTCATTTGTCTTCACTTGAATTTTCTAAAATATCCCAAATTCTCCGACTTCAGAACTGCCTCGGCCCGGCCACACTCATAGGTCAATTCTTCTGTTTAGTTCTCATAAATGAATCTTCAGAATCGGGTAAAATCATCTTTAGGGCGTGTGGGCGTCAGGCGGATGATAGCTTAGGTCCTCTAGTAGAACCAATACCTAGGGCGGATCCGAACCAAAATATGGTCGGAAACATAGACACTTCCACCTCTGGCAGAGTCGAACTAGGGTCTGCGTTTCCTCCTTCTATTTGCACCGAGGTCGACTTCTCCAGACTTAGGATAGCTTATAGGATTCTGGATAATATCAACATGAGATTACCTTAGGTAAACGAAAGCCTAGCCGATCCTCTTCTAGGCTGGGTCAATTTCTATCCCCAGATGTTCAACCGCAGGGTCAGGTTGCCTCTGCACCCCTTTGTGCAGCATTTCCTTTTAGCTACCAACTTGGCCCCAACTCAGTTAGCACGAAATGGGTGGGCCACTCTGCTCGGCTTGTGGTTCACCTGGTCGAGTTTCAGCTTTGGGAATGAGAGCTTATTCCTAGATGTAGGACAATTCTTTGCTACCCACATCATCAAGCCTTACAACGAACACCCGAGTCGGTATTACATATCAGCTCGAAATAGTTTTTGTAAGATCGTAGACTCTCCCTCGGCCAATAAGCACTAGAGGGACAAATGGTTCCTTATTTCTGGTGAGTGGCTTGTCATAAGGGACGAACATCCATTTTGCCAACTGTCTAGTGAGTTCGACGAGTTAGATGCGTATACACCGGGTCAATTAGCTTAGGGAGCTCGACTCACACATAATATACTCTGCATTTGGATACTCTCATACTAACTTGGTCGCTTTCTTATGTAGCTGTACCTCGACCCCCACCTCGGATCAAGAAGTATTCTAAGGAACTCAGAAGCCGGATCGTCTGTGACAAGATCTGGTATGAAGGGCTGCTCGACGACGTGAATCTCCATCTGTTGGATGTTGGAGTTGGAGTCAACCCATACCTCTTTCTTGGAGTAGCCCAGCTACTACGTCCAGTCCCTGATTGATGATCTAGCTCGGCTCCACTTCACAGATTGCCACACTGGAGCTATCGTCAATTAGGAGTTAACTGCCAGGAAGACTAGCTTCACCCGCAAACGCAAAGCCGTCAAAGAGGCTAAAGAGCTCCGAGCTGAGCTGGCGAAAGCATGCAAAGAGGTGGATGAGCTGAACAAGACCGTTACCTCCCAAGAAAACCTCCTGAGCCAGGCTCGGGTCGACATACGAACCATGGAGGCTCGGGCGAAGGTAGCCGAAGAGAGCGCCAACACGGAGGCAGCCAAGCGAGCTTCCGAAAGGGCCGACTTCGAGGCGAAGCTGACGAACTTTGACTTCTTGGAGTCTGCCATGAAAAAGCTTCCTGACTTCGACGATCTGGTGCGAGACCTAGCTGACAAAGGCTTCGACATTGCAGCTGCTGAAGTAAAAAAGTTGGCCCCCGAGCTGGACCTGGCCTCTGTGTATGCAGCCTTTGAGGCAACCATGGAAGAGGATGAAGAAGGAAAAGCCGAGGCTGCTAATCCCGCTGGCAAGGGTAATAGGGGCGACAAAAATGTCTGA

mRNA sequence

ATGAAGCTCGCGCCGCCGGAGCCGCTGTGCGCTGTCACCGTTGGTTCGTCGAGCGCCGCCGCCGGCTGGGTTCGAGGAGACGCCGTCGCCGCTGGTTCGAGGAACGCCGGCCGCTGCTGCTACGGGTTCGCCGGATGGAGAAGCGCCACCGATCGCCGCTGTTGCCGTGGGTCGTCGCCGGAGAAAAAAAAACAGGGGAGGCCGGCGGCTGGGCTTGTCGAGGATGAGCTAGGTGATGGACTTCAGATGTTGCACGAAGGACTGCAAAACAGAGTAACAGGCTCCGATGCTAAAGTCAGCGTAATACCGGACAGGGTTCCCGACAATGTCTCACGGCTCTTTAAGGTCGCCGTACGATATGCGTGCTGTCGTGAAGTTTGTCGGATAAAGGACCGAGCTGAGGTAAACGAAAGCCTAGCCGATCCTCTTCTAGGCTGGGTCAATTTCTATCCCCAGATGTTCAACCGCAGGGTCAGGTTGCCTCTGCACCCCTTTGTGCAGCATTTCCTTTTAGCTACCAACTTGGCCCCAACTCAGTTAGCACGAAATGGGTGGGCCACTCTGCTCGGCTTGTGGTTCACCTGGTCGAGTTTCAGCTTTGGGAATGAGAGCTTATTCCTAGATGTAGGACAATTCTTTGCTACCCACATCATCAAGCCTTACAACGAACACCCGACTGTACCTCGACCCCCACCTCGGATCAAGAAGTATTCTAAGGAACTCAGAAGCCGGATCGTCTGTGACAAGATCTGGTATGAAGGGCTGCTCGACGACGTGAATCTCCATCTGTTGGATGTTGGAGTTGGAGAGTTAACTGCCAGGAAGACTAGCTTCACCCGCAAACGCAAAGCCGTCAAAGAGGCTAAAGAGCTCCGAGCTGAGCTGGCGAAAGCATGCAAAGAGGTGGATGAGCTGAACAAGACCGTTACCTCCCAAGAAAACCTCCTGAGCCAGGCTCGGGTCGACATACGAACCATGGAGGCTCGGGCGAAGGTAGCCGAAGAGAGCGCCAACACGGAGGCAGCCAAGCGAGCTTCCGAAAGGGCCGACTTCGAGGCGAAGCTGACGAACTTTGACTTCTTGGAGTCTGCCATGAAAAAGCTTCCTGACTTCGACGATCTGGTGCGAGACCTAGCTGACAAAGGCTTCGACATTGCAGCTGCTGAAGTAAAAAAGTTGGCCCCCGAGCTGGACCTGGCCTCTGTGTATGCAGCCTTTGAGGCAACCATGGAAGAGGATGAAGAAGGAAAAGCCGAGGCTGCTAATCCCGCTGGCAAGGGTAATAGGGGCGACAAAAATGTCTGA

Coding sequence (CDS)

ATGAAGCTCGCGCCGCCGGAGCCGCTGTGCGCTGTCACCGTTGGTTCGTCGAGCGCCGCCGCCGGCTGGGTTCGAGGAGACGCCGTCGCCGCTGGTTCGAGGAACGCCGGCCGCTGCTGCTACGGGTTCGCCGGATGGAGAAGCGCCACCGATCGCCGCTGTTGCCGTGGGTCGTCGCCGGAGAAAAAAAAACAGGGGAGGCCGGCGGCTGGGCTTGTCGAGGATGAGCTAGGTGATGGACTTCAGATGTTGCACGAAGGACTGCAAAACAGAGTAACAGGCTCCGATGCTAAAGTCAGCGTAATACCGGACAGGGTTCCCGACAATGTCTCACGGCTCTTTAAGGTCGCCGTACGATATGCGTGCTGTCGTGAAGTTTGTCGGATAAAGGACCGAGCTGAGGTAAACGAAAGCCTAGCCGATCCTCTTCTAGGCTGGGTCAATTTCTATCCCCAGATGTTCAACCGCAGGGTCAGGTTGCCTCTGCACCCCTTTGTGCAGCATTTCCTTTTAGCTACCAACTTGGCCCCAACTCAGTTAGCACGAAATGGGTGGGCCACTCTGCTCGGCTTGTGGTTCACCTGGTCGAGTTTCAGCTTTGGGAATGAGAGCTTATTCCTAGATGTAGGACAATTCTTTGCTACCCACATCATCAAGCCTTACAACGAACACCCGACTGTACCTCGACCCCCACCTCGGATCAAGAAGTATTCTAAGGAACTCAGAAGCCGGATCGTCTGTGACAAGATCTGGTATGAAGGGCTGCTCGACGACGTGAATCTCCATCTGTTGGATGTTGGAGTTGGAGAGTTAACTGCCAGGAAGACTAGCTTCACCCGCAAACGCAAAGCCGTCAAAGAGGCTAAAGAGCTCCGAGCTGAGCTGGCGAAAGCATGCAAAGAGGTGGATGAGCTGAACAAGACCGTTACCTCCCAAGAAAACCTCCTGAGCCAGGCTCGGGTCGACATACGAACCATGGAGGCTCGGGCGAAGGTAGCCGAAGAGAGCGCCAACACGGAGGCAGCCAAGCGAGCTTCCGAAAGGGCCGACTTCGAGGCGAAGCTGACGAACTTTGACTTCTTGGAGTCTGCCATGAAAAAGCTTCCTGACTTCGACGATCTGGTGCGAGACCTAGCTGACAAAGGCTTCGACATTGCAGCTGCTGAAGTAAAAAAGTTGGCCCCCGAGCTGGACCTGGCCTCTGTGTATGCAGCCTTTGAGGCAACCATGGAAGAGGATGAAGAAGGAAAAGCCGAGGCTGCTAATCCCGCTGGCAAGGGTAATAGGGGCGACAAAAATGTCTGA

Protein sequence

MKLAPPEPLCAVTVGSSSAAAGWVRGDAVAAGSRNAGRCCYGFAGWRSATDRRCCRGSSPEKKKQGRPAAGLVEDELGDGLQMLHEGLQNRVTGSDAKVSVIPDRVPDNVSRLFKVAVRYACCREVCRIKDRAEVNESLADPLLGWVNFYPQMFNRRVRLPLHPFVQHFLLATNLAPTQLARNGWATLLGLWFTWSSFSFGNESLFLDVGQFFATHIIKPYNEHPTVPRPPPRIKKYSKELRSRIVCDKIWYEGLLDDVNLHLLDVGVGELTARKTSFTRKRKAVKEAKELRAELAKACKEVDELNKTVTSQENLLSQARVDIRTMEARAKVAEESANTEAAKRASERADFEAKLTNFDFLESAMKKLPDFDDLVRDLADKGFDIAAAEVKKLAPELDLASVYAAFEATMEEDEEGKAEAANPAGKGNRGDKNV

Homology

[Close]

BLAST of Moc05g25270 vs. NCBI nr
Match: XP_022159063.1 (uncharacterized protein LOC111025502, partial [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 4.5e-07
Identity = 38/93 (40.86%), Postives = 45/93 (48.39%), Query Frame = 0


Query: 134 EVNESLADPLLGWVNFYPQMFNRRVRLPLHPFVQHFLLATNLAPTQLARNGWATLLGLWF 193
           E  E   +P  GWV  Y +MF   +RLPLHPFVQ FL  T LAP Q+A NGW  +  L  
Sbjct: 75  EEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAI 134

Query: 194 T-WSSFSFGNESLFLDVGQFFATHIIKPYNEHP 226
             W       E+   DV Q  A    K   + P
Sbjct: 135 LFWLRARDSEEAELXDVDQLLACFEAKRIAKKP 167

[Close]

BLAST of Moc05g25270 vs. ExPASy TrEMBL
Match: A0A6J1DXS5 (uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025502 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-07
Identity = 38/93 (40.86%), Postives = 45/93 (48.39%), Query Frame = 0


Query: 134 EVNESLADPLLGWVNFYPQMFNRRVRLPLHPFVQHFLLATNLAPTQLARNGWATLLGLWF 193
           E  E   +P  GWV  Y +MF   +RLPLHPFVQ FL  T LAP Q+A NGW  +  L  
Sbjct: 75  EEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAI 134

Query: 194 T-WSSFSFGNESLFLDVGQFFATHIIKPYNEHP 226
             W       E+   DV Q  A    K   + P
Sbjct: 135 LFWLRARDSEEAELXDVDQLLACFEAKRIAKKP 167

[Close]

BLAST of Moc05g25270 vs. ExPASy TrEMBL
Match: A0A2N9HFC5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38156 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.0e-05
Identity = 53/155 (34.19%), Postives = 69/155 (44.52%), Query Frame = 0


Query: 69  AAGLVEDELGDGLQMLHEGLQN-----RVTGSDAKVSVIPDRVPDNVSRLFKVAV----- 128
           AAG   ++L +GL    EG ++      V+GS   V   PD      S L KV       
Sbjct: 67  AAGNKIEDLPEGLSERDEGTRSTEETPSVSGSSGTVG--PDDSWTVRSYLSKVVAVEDLD 126

Query: 129 ----RYACCRE-VCRIKDRAEVNESLADPLLGWVNFYPQMFNRRVRLPLHPFVQHFLLAT 188
               +Y    + V RI +  E+  SL     G V FY   FN  VR PL P ++  L   
Sbjct: 127 KYRRKYQIPEDVVLRIPESEEIACSLR---YGDVAFYEADFNAGVRFPLQPLMRELLDRL 186

Query: 189 NLAPTQLARNGWATLLGLWFTWSSFSFGNESLFLD 209
           NLAP QLA N W T++G    W   S G + L +D
Sbjct: 187 NLAPGQLAPNAWRTVVGSMVMWKVLSGGKDDLTVD 216

[Close]

BLAST of Moc05g25270 vs. ExPASy TrEMBL
Match: A0A2N9IQY3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54596 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-04
Identity = 43/151 (28.48%), Postives = 66/151 (43.71%), Query Frame = 0


Query: 73  VEDELGDGLQMLHEGLQNRVTGSDAKVSVIPDRVPDNVSRLFKVAVRYACCR---EVCRI 132
           + +EL +GL     G +     SDA  S    R P  V+R +K    ++  R   ++ RI
Sbjct: 147 LSEELPEGLSDESAGGEVGRASSDAVPSTSGSRQPPRVNRSWKALSFFSKIRRDEDIDRI 206

Query: 133 KDRAEVNESL------------ADPLLGWVNFYPQMFNRRVRLPLHPFVQHFLLATNLAP 192
           + R ++ + +                 G V FY   F   +R P+ PFV+  L   +LAP
Sbjct: 207 RRRYQIPDDVVLRIPDSDERACCPKYEGDVAFYEADFKAGLRFPIQPFVRELLDYLSLAP 266

Query: 193 TQLARNGWATLLGLWFTWSSFSFGNESLFLD 209
            Q+  NGW T++     W   S G E L +D
Sbjct: 267 GQINPNGWRTIISCMVMWRVTSNGEEDLTVD 297

[Close]

BLAST of Moc05g25270 vs. ExPASy TrEMBL
Match: A0A2N9G1E5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21072 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-04
Identity = 43/151 (28.48%), Postives = 66/151 (43.71%), Query Frame = 0


Query: 73  VEDELGDGLQMLHEGLQNRVTGSDAKVSVIPDRVPDNVSRLFKVAVRYACCR---EVCRI 132
           + +EL +GL     G +     SDA  S    R P  V+R +K    ++  R   ++ RI
Sbjct: 147 LSEELPEGLSDESAGGEVGRASSDAVPSTSGSRQPPRVNRSWKALSFFSKIRRDEDIDRI 206

Query: 133 KDRAEVNESL------------ADPLLGWVNFYPQMFNRRVRLPLHPFVQHFLLATNLAP 192
           + R ++ + +                 G V FY   F   +R P+ PFV+  L   +LAP
Sbjct: 207 RRRYQIPDDVVLRIPDSDERACCPKYEGDVAFYEADFKAGLRFPIQPFVRELLDYLSLAP 266

Query: 193 TQLARNGWATLLGLWFTWSSFSFGNESLFLD 209
            Q+  NGW T++     W   S G E L +D
Sbjct: 267 GQINPNGWRTIISCMVMWRVTSNGEEDLTVD 297

[Close]

BLAST of Moc05g25270 vs. ExPASy TrEMBL
Match: A0A2N9G5M4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25849 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-04
Identity = 43/151 (28.48%), Postives = 66/151 (43.71%), Query Frame = 0


Query: 73  VEDELGDGLQMLHEGLQNRVTGSDAKVSVIPDRVPDNVSRLFKVAVRYACCR---EVCRI 132
           + +EL +GL     G +     SDA  S    R P  V+R +K    ++  R   ++ RI
Sbjct: 147 LSEELPEGLSDESAGGEVGRASSDAVPSTSGSRQPPRVNRSWKALSFFSKIRRDEDIDRI 206

Query: 133 KDRAEVNESL------------ADPLLGWVNFYPQMFNRRVRLPLHPFVQHFLLATNLAP 192
           + R ++ + +                 G V FY   F   +R P+ PFV+  L   +LAP
Sbjct: 207 RRRYQIPDDVVLRIPDSDERACCPKYEGDVAFYEADFKAGLRFPIQPFVRELLDYLSLAP 266

Query: 193 TQLARNGWATLLGLWFTWSSFSFGNESLFLD 209
            Q+  NGW T++     W   S G E L +D
Sbjct: 267 GQINPNGWRTIISCMVMWRVTSNGEEDLTVD 297

The following BLAST results are available for this feature:

BLAST of Moc05g25270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159063.1	4.5e-07	40.86	uncharacterized protein LOC111025502, partial [Momordica charantia]	[more]

BLAST of Moc05g25270 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g25270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXS5	2.2e-07	40.86	uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A2N9HFC5	6.0e-05	34.19	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38156 PE=4 SV=1	[more]
A0A2N9IQY3	1.3e-04	28.48	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54596 PE=4 SV=1	[more]
A0A2N9G1E5	1.3e-04	28.48	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21072 PE=4 SV=1	[more]
A0A2N9G5M4	1.3e-04	28.48	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25849 PE=4 SV=1	[more]

BLAST of Moc05g25270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 281..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 411..434

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g25270.1	Moc05g25270.1	mRNA