Moc05g24810 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g24810
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr5: 17662538 .. 17662834 (+)
RNA-Seq ExpressionMoc05g24810
SyntenyMoc05g24810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGCTTTTCATGATATGTTTACCATGTACTCACCCAACCCGATTCAGACACATGTCAAGCTTGCAGATGGGTCATCGGCCATTATTAAGGGCTTTGGTTCTGTTATTCTTAGCTCAAACATTACATTGCACTCAGTGCTCCATGTGCCTAAATTATGTTGCAATCTAATTTCTGTTCAAAAGTTGACTCATGATTTAAAGTGTCAAGCCCTGTTCACTGACTCTAAGTGTTTGTTTCAGGACTTGATAACGGGAACGACGATTGGCAATGCTGATGGCTTTGAAGGGCTTTGA

mRNA sequence

ATGACCGCTTTTCATGATATGTTTACCATGTACTCACCCAACCCGATTCAGACACATGTCAAGCTTGCAGATGGGTCATCGGCCATTATTAAGGGCTTTGGTTCTGTTATTCTTAGCTCAAACATTACATTGCACTCAGTGCTCCATGACTTGATAACGGGAACGACGATTGGCAATGCTGATGGCTTTGAAGGGCTTTGA

Coding sequence (CDS)

ATGACCGCTTTTCATGATATGTTTACCATGTACTCACCCAACCCGATTCAGACACATGTCAAGCTTGCAGATGGGTCATCGGCCATTATTAAGGGCTTTGGTTCTGTTATTCTTAGCTCAAACATTACATTGCACTCAGTGCTCCATGACTTGATAACGGGAACGACGATTGGCAATGCTGATGGCTTTGAAGGGCTTTGA

Protein sequence

MTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSSNITLHSVLHDLITGTTIGNADGFEGL
Homology
BLAST of Moc05g24810 vs. NCBI nr
Match: XP_022159153.1 (uncharacterized protein LOC111025577 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21
Identity = 63/98 (64.29%), Postives = 64/98 (65.31%), Query Frame = 0

Query: 1   MTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSSNITLHSVL------------ 60
           MTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILS NITLHSVL            
Sbjct: 325 MTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPNITLHSVLXVPKLCCNLISV 384

Query: 61  --------------------HDLITGTTIGNADGFEGL 67
                                DLITGTTIG+ADGFEGL
Sbjct: 385 QKLTHDLKCQALFTDSKCLFQDLITGTTIGSADGFEGL 422

BLAST of Moc05g24810 vs. NCBI nr
Match: XP_022139695.1 (uncharacterized protein LOC111010542 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08
Identity = 44/89 (49.44%), Postives = 48/89 (53.93%), Query Frame = 0

Query: 10 MYSPNPIQTHVKLADGSSAIIKGFGSVILSSNITLHSVLH-------------------- 67
          MYSPN IQTHVKLADGSSAII GFG VILS +I L  +L+                    
Sbjct: 1  MYSPNSIQTHVKLADGSSAIINGFGYVILSLSIILQLMLNVPKLCFNLIFVQKLTHDLKC 60

BLAST of Moc05g24810 vs. NCBI nr
Match: CAN82832.1 (hypothetical protein VITISV_037703 [Vitis vinifera])

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 1   MTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSSNITLHSVLHDLITGTTIGNA 60
           MT    +F+ Y+P+P    VK ADGS  +I G G++ +   I+L  VLHD I+G TIGNA
Sbjct: 169 MTGREKLFSSYTPSPRNHRVKFADGSYTVIAGIGTIEIGPMISLKEVLHDRISGRTIGNA 228

Query: 61  DGFEGL 67
             F GL
Sbjct: 229 KEFNGL 234

BLAST of Moc05g24810 vs. NCBI nr
Match: RVW79120.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 1   MTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSSNITLHSVLHDLITGTTIGNA 60
           MT    +F+ Y P      +K+ADGS + I G GSV +S ++TLH+VLH+L +G TIGNA
Sbjct: 73  MTGSSQIFSSYKPCAGNKKIKIADGSLSAIAGKGSVFISPSLTLHNVLHELTSGRTIGNA 132

Query: 61  DGFEGL 67
               GL
Sbjct: 133 RKIGGL 138

BLAST of Moc05g24810 vs. NCBI nr
Match: RVW39537.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 1   MTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSSNITLHSVLHDLITGTTIGNA 60
           MT    +F+ Y P      +K+ADGS + I G GSV +S ++TLH+VLH+L +G TIGNA
Sbjct: 384 MTGSSQIFSSYKPCAGNKKIKIADGSLSAIAGKGSVFISPSLTLHNVLHELTSGRTIGNA 443

Query: 61  DGFEGL 67
               GL
Sbjct: 444 REIGGL 449

BLAST of Moc05g24810 vs. ExPASy TrEMBL
Match: A0A6J1DY12 (uncharacterized protein LOC111025577 OS=Momordica charantia OX=3673 GN=LOC111025577 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 63/98 (64.29%), Postives = 64/98 (65.31%), Query Frame = 0

Query: 1   MTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSSNITLHSVL------------ 60
           MTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILS NITLHSVL            
Sbjct: 325 MTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSPNITLHSVLXVPKLCCNLISV 384

Query: 61  --------------------HDLITGTTIGNADGFEGL 67
                                DLITGTTIG+ADGFEGL
Sbjct: 385 QKLTHDLKCQALFTDSKCLFQDLITGTTIGSADGFEGL 422

BLAST of Moc05g24810 vs. ExPASy TrEMBL
Match: A0A6J1CD10 (uncharacterized protein LOC111010542 OS=Momordica charantia OX=3673 GN=LOC111010542 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 44/89 (49.44%), Postives = 48/89 (53.93%), Query Frame = 0

Query: 10 MYSPNPIQTHVKLADGSSAIIKGFGSVILSSNITLHSVLH-------------------- 67
          MYSPN IQTHVKLADGSSAII GFG VILS +I L  +L+                    
Sbjct: 1  MYSPNSIQTHVKLADGSSAIINGFGYVILSLSIILQLMLNVPKLCFNLIFVQKLTHDLKC 60

BLAST of Moc05g24810 vs. ExPASy TrEMBL
Match: A5B469 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_037703 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-07
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 1   MTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSSNITLHSVLHDLITGTTIGNA 60
           MT    +F+ Y+P+P    VK ADGS  +I G G++ +   I+L  VLHD I+G TIGNA
Sbjct: 169 MTGREKLFSSYTPSPRNHRVKFADGSYTVIAGIGTIEIGPMISLKEVLHDRISGRTIGNA 228

Query: 61  DGFEGL 67
             F GL
Sbjct: 229 KEFNGL 234

BLAST of Moc05g24810 vs. ExPASy TrEMBL
Match: A0A438H3F6 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_253 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 1   MTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSSNITLHSVLHDLITGTTIGNA 60
           MT    +F+ Y P      +K+ADGS + I G GSV +S ++TLH+VLH+L +G TIGNA
Sbjct: 73  MTGSSQIFSSYKPCAGNKKIKIADGSLSAIAGKGSVFISPSLTLHNVLHELTSGRTIGNA 132

Query: 61  DGFEGL 67
               GL
Sbjct: 133 RKIGGL 138

BLAST of Moc05g24810 vs. ExPASy TrEMBL
Match: A0A438DVN1 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3476 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 1   MTAFHDMFTMYSPNPIQTHVKLADGSSAIIKGFGSVILSSNITLHSVLHDLITGTTIGNA 60
           MT    +F+ Y P      +K+ADGS + I G GSV +S ++TLH+VLH+L +G TIGNA
Sbjct: 384 MTGSSQIFSSYKPCAGNKKIKIADGSLSAIAGKGSVFISPSLTLHNVLHELTSGRTIGNA 443

Query: 61  DGFEGL 67
               GL
Sbjct: 444 REIGGL 449

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159153.13.2e-2164.29uncharacterized protein LOC111025577 [Momordica charantia][more]
XP_022139695.13.1e-0849.44uncharacterized protein LOC111010542 [Momordica charantia][more]
CAN82832.11.0e-0646.97hypothetical protein VITISV_037703 [Vitis vinifera][more]
RVW79120.13.8e-0646.97Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
RVW39537.13.8e-0646.97Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DY121.5e-2164.29uncharacterized protein LOC111025577 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1CD101.5e-0849.44uncharacterized protein LOC111010542 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A5B4694.8e-0746.97Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI... [more]
A0A438H3F61.8e-0646.97Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A438DVN11.8e-0646.97Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g24810.1Moc05g24810.1mRNA