Moc05g17690 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g17690
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr5: 13075650 .. 13079489 (+)
RNA-Seq Expression	Moc05g17690
Synteny	Moc05g17690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTAGGTTATTCGAAATAACTTATAGTTCTTTGGTCTACCCCCATGCATAGATCTTATAATAAAGTTTTTGTTTTCTAACAAGTGGTATCAGAACAAGTTTTGCATGGCTGTTTGCTTAATATTTGATTGCTGTTTATGAATAAATTTGTTGGTTGTTTCTTTAGTCAAATTTATAATTGAACAACATGAAATCTGAATTATTATAACTATTTGGATTGATAAGTTATTGGACAATTTTGAACGATTATTGAAAATCATATGAATTTATTGTTTATTGATTTGATGAAGTTTGATATATATGTTCTTCCCAATATTTTCAAATTGATCATAATATAATCAATTCTCAGTTACCGTTTAAATAAATAAATAAATAAGGTTTTAAAGATTGTGGCACTCCAATGTCGCATGAAGATTCATATTAAAAAAACAATATATATATATATATATATATATACATTTTAAAGACTGCGGCACGTCAGATTAATTTTTTTATTATTTTTTTTAAGGGTGCGGCGGCACTCGGAGTGCATGAGGCTACTGTGCTAGGGTTTGCACCTAGCACATAAAGAGATTGTTGCAGTGGGCTAGTCTCAACTTAAAGTTAATTTTTTTTATTTAATTTTTGATAAGTATTTTATATATTTTTAATTTCCCTTTTTTAAATTGTGCTAATTAAAAATTTACTACTACGGTGAATAAGTTTATATTCTATTTATTGGTAGCACAATTTATTTAATTTCTTTAAATGTTTTGATGCATGAAATATGCTATCAAAGTAGTCTCTATTTTATAAATTGAAGCATTTAAAGTTCTTAGATGTAGGGTATGAGTTGTTTATGCAGATTGTGATCGACCTAAAGGAAGGTTGCAATTTGGCCAAACAACAAACACACATGCAATAATAAATATGGATAACATAAGATCGTGTCCGTGAAGTTGTTAGTCGGCCCAAAGGAAGGCTATCATCCAAAAGGAATGAGTTATTAATGTTTTATTATTGTACCGAGAGTATCACTAGCAAATTAACATTTTTGTCCAAAAACTGAATGTCGATGTTGCATTAGGTATCTCACTTATCCTCATAAAGTTTATTTAGAATGTCATTAATATTTATATATATATAATGTGTGACATTACTTACTATATTGAGCTTGTGTTCTTTATACAGTTAAGGTTGCTAATTCTGATAATATGTCCACTCAAGTCAACAACATTCCTAGACTGAATGAGGCTAATTTTAAGGACTGGAAAGAAGACATTCAGATAGTACTTGGATGTATGGATTTAGACATTGCATTAAGGGTAGACCGTCCTAGTTCAACTGAGGAAAATCCTAATAAGGTTGAAATTGAGAAGTGAGATAGGTCTAATCGCATGTGTCTAATGAGCATGAAGCGCTCAATTCCAGAAACGTTTAGAGGCTCTATTGTTGAGGGAACGAATGCCAAAGGCTTTATAAAGGAAATGAAGCAGTACTTTACCAAAAATGATAAGACAGAGGCGAGTACCCTTTGACAAAGCTTACCTCTTTAAGATACATTGGTAAAGGAAACATAAGGGAATACATAATGCAAATGTCAAATGTTGCAGTAAAACTTAAGGCACTGAAGTTGGAAGTTTCTGAAGACTTTTTACTGCATTTGGTTTTAAACTCTCTTCCAGCAGAGTATAGCCACTTCAGGGTGAGTTACAACACTCAAAAGGACAAATGGTCCCTGAATGAGCTAATCTCTCACTGTGTTCAAGAGGAAGAGAGGATGCAGCGAGAGAAGACAAGAAAGTGTTCACATGGCTTCTACCTCAAAGAGTGTAAAGAGAGAAAATATTATGGTCAATATGATGGATCAGGTGAACAACGTCTAGGACCCTTTGCGATTTTCCTTAAAAATGTGGCATAGTTACTCAGTACATGATGCTTGGGAAACCTAGCATGAATGGAGGTTCCGAGAGGCGAAATAGGACTCTTAAAGATATGGTAAGAAGTATGATTGCTTATTCTTCTTTGCCAGAGTCTCTTTGCGGAGAAGCATTAAAAATCGCAGTTTACATACTTAACAGAGTGCCTAGCAAAGCAGAAAACAAAACCCCATATAAGCTGTGGACAAAAAAAAGACCCAGCCTAAGATATTTACACATTTGGGGATGTCCAGCGGAAGTAAGGCCTTATAGGCCAAATGAAAAGAAACTGGACACAAGAACCATAAGTTGCTACTTTGTTGGGTATGCTGAGCGCTCTCGAGGCTTTAAGTTCTATAATTCCACTTCAAGAACCTTTTCCGAGATGGGAAATGCTCGATTTCTTGAGAATATTGAGTTTGAGGGGAGAAATAAGAGTAAAGATGTTGTATTTGAAGAAGAAAATGCTACTATTAGGAATGACGTAGTTACTTTACCTACCATTGTCAGTAAAGTAGTTTTAGATAATGACACTCAAGATGAAGTTCCAACACTTGATGTCATTACCTCTCAAGACAACAATGTGGACACATCACTCTACCCTATAGATCAACCTCAACATACTCAAGAAGTGTCATTAAGAAGATCCACTAAAGAACGAAGAAGTGCAATACCAGATGATTATATTGTATTTCTTCAAGAACATGAGGATAACATTGGCCTTACAGAAAATGATTCTATCAATTTTCAACAGGCAATGAAAAATTCTAAGGCAGATAAGTGGATTGAGGCTATGCAAGATGAGATGAAATCCATGAGTGACAACGACGTTTGGGATCTAGTTGAGTTGCCTGCAGGAAAGAAACCTATTGGTTGTAAATGAATATTTAAAACAAAAGGGATTCACAAGGCAACATTGAAAGATATAAAACACGTCTTGTTGCAAAAGGTTTCACTCAAAAGGAAGACATAGATTATAAAGAGACTTTCTCTCCAATTTCCTCGAAAGACTCTTTTAGAATTATTATGGCACTGGTAGCACATTTTGACTTAGAGTTACATCAGATGAATGTTAAGACGACTTTTCTCAACGGAGACATTGTTGAAACCATTTACATGGAGCAACCAAAAACTTTGAATCAGGAAATCCAAAGTCAATGGTTTTTAGTCTAAAAAAAATCCATCTACGGACTCAAGCAAGCTTTCCGTCAATGGTACCACAAATTTCATAATGTCATTACTTCTTTTGGTTTTGAGGCTAATGTAGTTGATGAATGTGTCTACTGCAAGAATAGTGGGAGTAAAGATATCTTCCTAGTATTATATATAGATGACATCTTATTGGCTTTCAGTGATTTAAACCTACTACAGGAAACCAAGAACTTTCTGACAAAGCATTTTGAGATGAAAGACTTGGCAATGCATCTTTTGTCTTGGGTATACAGATACTGCGAGATCGTTCTCTAGGTATCTTAAGATTATCACAAAAGAGTTACATTGATAAAGTATTGAGTAGGTATGACATGAATGGAAGTCAACTAGGACATACGCCTGTAGCAAAAGGAGACAAATTCAGTTTGAGTCAAAGACTTAAAAGTGATCATAAAAGGAGTGAGATACAAAAGATTTCCTATTCATCAGCCATAGGGAGTCTAATGTATGCTCAAGTTTGCGTCCGACCTGATATAACTTTTATAGTGAGAATGCTAGGCAGATATTTGAGTAATCAGTATGCAACACTGGAAAGCAGTCAAGAGGGTTATGAGATATTTGCAAAGAACAAAAGATAACATACTCACATATTGAAGATTAGATAATATAGAGATCTTTAGCTTCTCTGATTCTGATTTTACTGGATGCCAAGATAGCAAGGGATCCACATCTGGGTATATCTACATGATGGCAGACGAAGCCATTTCATGGAAAAATGTCAAGTAA

mRNA sequence

ATGGATCTAGTTAAGGTTGCTAATTCTGATAATATGTCCACTCAAGTCAACAACATTCCTAGACTGAATGAGGCTAATTTTAAGGACTGGAAAGAAGACATTCAGATAGTACTTGGATGTATGGATTTAGACATTGCATTAAGGGTAGACCGTCCTAGTTCAACTGAGGAAAATCCTAATAAGGTTGAAATTGAGAAAGGCGAGTACCCTTTGACAAAGCTTACCTCTTTAAGATACATTGGTAAAGGAAACATAAGGGAATACATAATGCAAATGTCAAATGTTGCAGTAAAACTTAAGGCACTGAAGTTGGAAGTTTCTGAAGACTTTTTACTGCATTTGGTTTTAAACTCTCTTCCAGCAGAGTATAGCCACTTCAGGGTGAGTTACAACACTCAAAAGGACAAATGGTCCCTGAATGAGCTAATCTCTCACTGTGTTCAAGAGGAAGAGAGGATGCAGCGAGAGAAGACAAGAAAGTGTTCACATGGCTTCTACCTCAAAGAGTTTACTCAGTACATGATGCTTGGGAAACCTAGCATGAATGGAGGTTCCGAGAGGCGAAATAGGACTCTTAAAGATATGGTAAGAAGTATGATTGCTTATTCTTCTTTGCCAGAGTCTCTTTGCGGAGAAGCATTAAAAATCGCAGTTTACATACTTAACAGAGTGCCTAGCAAAGCAGAAAACAAAACCCCATATAAGCTGTGGACAAAAAAAAGACCCAGCCTAAGATATTTACACATTTGGGGATGTCCAGCGGAAGTAAGGCCTTATAGGCCAAATGAAAAGAAACTGGACACAAGAACCATAAGTTGCTACTTTGTTGGGTATGCTGAGCGCTCTCGAGGCTTTAAGTTCTATAATTCCACTTCAAGAACCTTTTCCGAGATGGGAAATGCTCGATTTCTTGAGAATATTGAGTTTGAGGGGAGAAATAAGAGTAAAGATGTTGTATTTGAAGAAGAAAATGCTACTATTAGGAATGACGTAGTTACTTTACCTACCATTGTCAGTAAAGTAGTTTTAGATAATGACACTCAAGATGAAGTTCCAACACTTGATGTCATTACCTCTCAAGACAACAATGTGGACACATCACTCTACCCTATAGATCAACCTCAACATACTCAAGAAGTGTCATTAAGAAGATCCACTAAAGAACGAAGAAATAGCAAGGGATCCACATCTGGGTATATCTACATGATGGCAGACGAAGCCATTTCATGGAAAAATGTCAAGTAA

Coding sequence (CDS)

ATGGATCTAGTTAAGGTTGCTAATTCTGATAATATGTCCACTCAAGTCAACAACATTCCTAGACTGAATGAGGCTAATTTTAAGGACTGGAAAGAAGACATTCAGATAGTACTTGGATGTATGGATTTAGACATTGCATTAAGGGTAGACCGTCCTAGTTCAACTGAGGAAAATCCTAATAAGGTTGAAATTGAGAAAGGCGAGTACCCTTTGACAAAGCTTACCTCTTTAAGATACATTGGTAAAGGAAACATAAGGGAATACATAATGCAAATGTCAAATGTTGCAGTAAAACTTAAGGCACTGAAGTTGGAAGTTTCTGAAGACTTTTTACTGCATTTGGTTTTAAACTCTCTTCCAGCAGAGTATAGCCACTTCAGGGTGAGTTACAACACTCAAAAGGACAAATGGTCCCTGAATGAGCTAATCTCTCACTGTGTTCAAGAGGAAGAGAGGATGCAGCGAGAGAAGACAAGAAAGTGTTCACATGGCTTCTACCTCAAAGAGTTTACTCAGTACATGATGCTTGGGAAACCTAGCATGAATGGAGGTTCCGAGAGGCGAAATAGGACTCTTAAAGATATGGTAAGAAGTATGATTGCTTATTCTTCTTTGCCAGAGTCTCTTTGCGGAGAAGCATTAAAAATCGCAGTTTACATACTTAACAGAGTGCCTAGCAAAGCAGAAAACAAAACCCCATATAAGCTGTGGACAAAAAAAAGACCCAGCCTAAGATATTTACACATTTGGGGATGTCCAGCGGAAGTAAGGCCTTATAGGCCAAATGAAAAGAAACTGGACACAAGAACCATAAGTTGCTACTTTGTTGGGTATGCTGAGCGCTCTCGAGGCTTTAAGTTCTATAATTCCACTTCAAGAACCTTTTCCGAGATGGGAAATGCTCGATTTCTTGAGAATATTGAGTTTGAGGGGAGAAATAAGAGTAAAGATGTTGTATTTGAAGAAGAAAATGCTACTATTAGGAATGACGTAGTTACTTTACCTACCATTGTCAGTAAAGTAGTTTTAGATAATGACACTCAAGATGAAGTTCCAACACTTGATGTCATTACCTCTCAAGACAACAATGTGGACACATCACTCTACCCTATAGATCAACCTCAACATACTCAAGAAGTGTCATTAAGAAGATCCACTAAAGAACGAAGAAATAGCAAGGGATCCACATCTGGGTATATCTACATGATGGCAGACGAAGCCATTTCATGGAAAAATGTCAAGTAA

Protein sequence

MDLVKVANSDNMSTQVNNIPRLNEANFKDWKEDIQIVLGCMDLDIALRVDRPSSTEENPNKVEIEKGEYPLTKLTSLRYIGKGNIREYIMQMSNVAVKLKALKLEVSEDFLLHLVLNSLPAEYSHFRVSYNTQKDKWSLNELISHCVQEEERMQREKTRKCSHGFYLKEFTQYMMLGKPSMNGGSERRNRTLKDMVRSMIAYSSLPESLCGEALKIAVYILNRVPSKAENKTPYKLWTKKRPSLRYLHIWGCPAEVRPYRPNEKKLDTRTISCYFVGYAERSRGFKFYNSTSRTFSEMGNARFLENIEFEGRNKSKDVVFEEENATIRNDVVTLPTIVSKVVLDNDTQDEVPTLDVITSQDNNVDTSLYPIDQPQHTQEVSLRRSTKERRNSKGSTSGYIYMMADEAISWKNVK

Homology

[Close]

BLAST of Moc05g17690 vs. NCBI nr
Match: KYP41105.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 420.2 bits (1079), Expect = 2.0e-113
Identity = 230/422 (54.50%), Postives = 284/422 (67.30%), Query Frame = 0


Query: 22  LNEANFKDWKEDIQIVLGCMDLDIALRVDRPSSTEENPNKVEIEKGEYP----------- 81
           LN  NFK WKE ++I++GCMDLD+A RV++P+ T EN ++ ++EK E             
Sbjct: 2   LNGTNFKAWKEAVEIIIGCMDLDLAFRVEKPTPTPENLDEDKVEKWERSNRMCLMIMKRS 61

Query: 82  -------------------------------------LTKLTSLRYIGKGNIREYIMQMS 141
                                                  KL S+RY GKGNIR+YIM+MS
Sbjct: 62  VPEVFQGSISESQNDKGFLDAVEHYFTSNEKADARRLFAKLISMRYKGKGNIRDYIMEMS 121

Query: 142 NVAVKLKALKLEVSEDFLLHLVLNSLPAEYSHFRVSYNTQKDKWSLNELISHCVQEEERM 201
           N+A KLKALKLE+S+D L+HL L SLP ++  F+VSYNTQKDKW+LNELISH VQEEER 
Sbjct: 122 NLASKLKALKLELSDDLLVHLFLISLPTQFGQFKVSYNTQKDKWTLNELISHYVQEEERQ 181

Query: 202 QREKTRKCSHGFYLKE---FTQYMMLGKPSMNGGSERRNRTLKDMVRSMIAYSSLPESLC 261
           QREKT       +L+E     QY M GKPSMNG +ERRNRTLKDMVRSMI++SSLPESL 
Sbjct: 182 QREKTEL---ALFLRECGIAPQYTMPGKPSMNGVAERRNRTLKDMVRSMISHSSLPESLW 241

Query: 262 GEALKIAVYILNRVPSKAENKTPYKLWTKKRPSLRYLHIWGCPAEVRPYRPNEKKLDTRT 321
           GEALK AVYILNRVPSKA NKTPY+LWT KRPSL++LHIWGCPAE RPYRP+E KL++RT
Sbjct: 242 GEALKTAVYILNRVPSKAVNKTPYELWTGKRPSLKHLHIWGCPAEARPYRPHESKLESRT 301

Query: 322 ISCYFVGYAERSRGFKFYNSTSRTFSEMGNARFLENIEFEGRNKSKDVVFEEENATIRND 381
           +SCYFVGY ERSRG+KFYN T+R+F E GNARFLE++EF      ++VVFEEE     + 
Sbjct: 302 VSCYFVGYPERSRGYKFYNPTTRSFFETGNARFLEDVEFGKEENIRNVVFEEEPVIDSDQ 361

Query: 382 VVTLPTIVSKVVLDNDTQDEVPTLDVITSQDNNVDTSLYPIDQPQHTQEVSLRRSTKERR 393
           V+   TI     +  D    +P  D++ +QDN       PI+Q Q  QEV LRRST+ER+
Sbjct: 362 VLVPITIPVPTPVIGDNHGVIP--DIVPTQDNIEVLPQIPIEQAQQPQEVPLRRSTRERK 418

[Close]

BLAST of Moc05g17690 vs. NCBI nr
Match: RVW97553.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 339.7 bits (870), Expect = 3.5e-89
Identity = 234/604 (38.74%), Postives = 291/604 (48.18%), Query Frame = 0


Query: 8   NSDNMSTQVNNIPRLNEANFKDWKEDIQIVLGCMDLDIALRVDRPS-----STEENPNKV 67
           ++ ++S  VNNIP LN  NFK WKE + IVLGCMDLD ALR DRPS     ST E  + +
Sbjct: 3   STSSISANVNNIPVLNGTNFKKWKEHVIIVLGCMDLDFALREDRPSDLTSASTAEQRSTM 62

Query: 68  E-----------IEKGEYP-----------------------------------LTKLTS 127
           E           I K   P                                   L+KL S
Sbjct: 63  EKWERSNRMSLMIMKHSIPEAIRGAIPEETQAKAFLDQIANRFAANEKVETSTILSKLVS 122

Query: 128 LRYIGKGNIREYIMQMSNVAVKLKALKLEVSEDFLLHLVLNSLPAEYSHFRVSYNTQKDK 187
           +RY GK NIREYIM+MSN+  +LKALKLE+SED L+HLVL SLP ++S F++SYNTQK+K
Sbjct: 123 MRYKGKENIREYIMEMSNLVTRLKALKLELSEDILVHLVLISLPTQFSPFKISYNTQKEK 182

Query: 188 WSLNELISHCVQEEERMQREKTRKC-----SHGF-------------------------- 247
           W+LNELI+ CVQEEER+++EK         S GF                          
Sbjct: 183 WTLNELIAQCVQEEERLKQEKIESAHLASTSQGFEINLAVVPTDTWWIDTGATTHISVTM 242

Query: 248 ------------------------------------------------------------ 307
                                                                       
Sbjct: 243 QGCLRSRMPTDGERYIYVGNGNKAAVKAIGLFILQLDSGYICGPFPTPSWNGQQYFITFI 302

Query: 308 ------------------------------------------------------------ 367
                                                                       
Sbjct: 303 DDYSRYGYLYLIHEKSQSLDVFKNFKAEVENQLSKKIKAVRSDRGGEYYGRYDRSGEQRP 362

Query: 368 -----YLKE---FTQYMMLGKPSMNGGSERRNRTLKDMVRSMIAYSSLPESLCGEALKIA 393
                YL E     QY M G PS NG +ERRNRTLKDMVRSMI++S+LPESL GEA+K A
Sbjct: 363 GPFAKYLMECGIVPQYTMPGTPSQNGVAERRNRTLKDMVRSMISHSTLPESLWGEAIKTA 422

[Close]

BLAST of Moc05g17690 vs. NCBI nr
Match: RVW61151.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 337.0 bits (863), Expect = 2.2e-88
Identity = 235/613 (38.34%), Postives = 293/613 (47.80%), Query Frame = 0


Query: 8   NSDNMSTQVNNIPRLNEANFKDWKEDIQIVLGCMDLDIALRVDRPS-----STEENPNKV 67
           ++ ++S  VNNIP LN  NFK WKE + IVLGCMDLD ALR DRPS     ST E  + +
Sbjct: 3   SASSISANVNNIPVLNGTNFKKWKEHVIIVLGCMDLDFALREDRPSDLTSASTAEQRSTM 62

Query: 68  E-----------IEKGEYP-----------------------------------LTKLTS 127
           E           I K   P                                   L+KL S
Sbjct: 63  EKWERSNRMSLMIMKHSIPEAIRGAIPEETQAKAFLDQIANRFAANEKVETSTILSKLVS 122

Query: 128 LRYIGKGNIREYIMQMSNVAVKLKALKLEVSEDFLLHLVLNSLPAEYSHFRVSYNTQKDK 187
           +RY GK NIREYIM+MSN+  +LKALKLE+SED L+HLVL SLP ++S F++SYNTQK+K
Sbjct: 123 MRYKGKENIREYIMEMSNLVTRLKALKLELSEDILVHLVLISLPTQFSPFKISYNTQKEK 182

Query: 188 WSLNELISHCVQEEERMQREKTRKC-----SHGF-------------------------- 247
           W+LNELI+ CVQEEER+++EK         S GF                          
Sbjct: 183 WTLNELIAQCVQEEERLKQEKIESAHLASTSQGFGTNKKRKRDNKGKQTAVSGTSKQKEQ 242

Query: 248 ------------------------------------------------------------ 307
                                                                       
Sbjct: 243 KKQDKEITCFFCKKAGHMKKTCTKYAAWREKKGTLLNFVCSEINLAVVPTDTWWIDTGAT 302

Query: 308 ------------------------------------------------------------ 367
                                                                       
Sbjct: 303 THISVTMQGCLRSRMPTDGERYIYVGNGNKNFKAEVENQLSKKIKAVRSDRGGEYYGRYD 362

Query: 368 ------------YLKE---FTQYMMLGKPSMNGGSERRNRTLKDMVRSMIAYSSLPESLC 393
                       YL E     QY M G PS NG +ERRNRTLKDMVRSMI++S+LPESL 
Sbjct: 363 GSGEQRPGPFAKYLMECGIVPQYTMPGTPSQNGVAERRNRTLKDMVRSMISHSTLPESLW 422

[Close]

BLAST of Moc05g17690 vs. NCBI nr
Match: RVW21227.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 332.8 bits (852), Expect = 4.2e-87
Identity = 203/506 (40.12%), Postives = 268/506 (52.96%), Query Frame = 0


Query: 8   NSDNMSTQVNNIPRLNEANFKDWKEDIQIVLGCMDLDIALRVDRP---SSTEENPNKVEI 67
           +  ++S  VNNIP LN  NFK WKE + IVLGCM LD ALR DRP   +S      +  +
Sbjct: 3   SESSISANVNNIPVLNGTNFKKWKEHVIIVLGCMHLDYALREDRPADLTSANTAEQRAAM 62

Query: 68  EK---------------------GEYP---------------------------LTKLTS 127
           EK                     G  P                           L+K  S
Sbjct: 63  EKWERSNNMSLMVMKHLIPKAIRGAIPEETRAKTFLDQIENRFAANEKVETNTILSKFVS 122

Query: 128 LRYIGKGNIREYIMQMSNVAVKLKALKLEVSEDFLLHLVLNSLPAEYSHFRVSYNTQKDK 187
           +RY GK NIREYIM+MSN+  +LKALKL++SE  L+HLVL SLP ++S F+++YNTQK+K
Sbjct: 123 MRYKGKENIREYIMKMSNLVTRLKALKLKLSEYILMHLVLISLPTQFSSFKINYNTQKEK 182

Query: 188 WSLNELISHCVQEEERMQREK--------------------------------------- 247
           W+LNELI+ CVQEEER+++EK                                       
Sbjct: 183 WTLNELIAQCVQEEERLKQEKIENAHLASTSQRFGTSKKRKKDNKGKQTAFYGTSKQKVQ 242

Query: 248 ------------------------------------------------------------ 307
                                                                       
Sbjct: 243 KKQDKEITCFFCKKAGHMKKTCIKYAAWCEKKVEVENQLSKKIKVVRFDRGGEYYGRYDG 302

Query: 308 -TRKCSHGF--YLKE---FTQYMMLGKPSMNGGSERRNRTLKDMVRSMIAYSSLPESLCG 358
            + +C   F  YL E     QY MLG PS NG +ER N TLKDMVRSMI++S+LPESL  
Sbjct: 303 SSEQCPRPFAKYLMECGIIPQYTMLGTPSQNGVAERPNCTLKDMVRSMISHSTLPESLWA 362

[Close]

BLAST of Moc05g17690 vs. NCBI nr
Match: RVX07895.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 331.3 bits (848), Expect = 1.2e-86
Identity = 229/606 (37.79%), Postives = 294/606 (48.51%), Query Frame = 0


Query: 8   NSDNMSTQVNNIPRLNEANFKDWKEDIQIVLGCMDLDIALRVDRPS-----STEENPNKV 67
           ++ ++S  VNNIP LN+ NFK WKE I IVLGCMDLD ALR DRPS     ST E  + +
Sbjct: 3   STSSISANVNNIPVLNDTNFKKWKEHIIIVLGCMDLDFALREDRPSDLTSASTVEQRSTM 62

Query: 68  E-----------IEKGEYP-----------------------------------LTKLTS 127
           E           I K   P                                   L+KL S
Sbjct: 63  EKWERSNRMSLMIMKHSIPEAIRGAILEETQAKAFLDQIANRFAANEKVETNTILSKLVS 122

Query: 128 LRYIGKGNIREYIMQMSNVAVKLKALKLEVSEDFLLHLVLNSLPAEYSHFRVSYNTQKDK 187
           +RY  K NIREYIM+MSN+  +LKALKLE+SED L+HLVL SLP ++S F++SYNTQK+K
Sbjct: 123 MRYKEKENIREYIMKMSNLVTRLKALKLELSEDILVHLVLISLPTQFSPFKISYNTQKEK 182

Query: 188 WSLNELISHCVQEEERMQREKTRKC-----SHGF-------------------------- 247
           W+LNELI+ CVQEEER+++EK         S GF                          
Sbjct: 183 WTLNELITQCVQEEERLKQEKIESAHLASTSQGFEINLAVVPTDTWWIDTGAITHISVTM 242

Query: 248 ------------------------------------------------------------ 307
                                                                       
Sbjct: 243 QGCLRSRMPTDGERYIYVGNGNKATVKAIGLFILQLDSGCTLDLEETFVVPSFRQNLIFV 302

Query: 308 ------------------------------------------------------------ 367
                                                                       
Sbjct: 303 SCLDKFGYCCSFGNGMSLDMFKNFKAEVENQLSKKIKVVRSDREGEYYGRYDGSGEQRPW 362

Query: 368 ----YLKE---FTQYMMLGKPSMNGGSERRNRTLKDMVRSMIAYSSLPESLCGEALKIAV 393
               YL E     QY M G PS NG +ERRNRT KDMVRSMI++S+LPESL GEA+K AV
Sbjct: 363 PFAKYLMECGIVPQYTMPGTPSQNGVAERRNRTFKDMVRSMISHSTLPESLWGEAIKTAV 422

[Close]

BLAST of Moc05g17690 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.7e-19
Identity = 77/281 (27.40%), Postives = 132/281 (46.98%), Query Frame = 0


Query: 145 HCVQEEERMQREKTRKCSHG--FYLKEFTQY----------MMLGKPSMNGGSERRNRTL 204
           H + E E  ++ K  +  +G  +  +EF +Y           + G P  NG +ER NRT+
Sbjct: 533 HALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTI 592

Query: 205 KDMVRSMIAYSSLPESLCGEALKIAVYILNRVPS-KAENKTPYKLWTKKRPSLRYLHIWG 264
            + VRSM+  + LP+S  GEA++ A Y++NR PS     + P ++WT K  S  +L ++G
Sbjct: 593 VEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFG 652

Query: 265 CPAEVRPYRPNEKKLDTRTISCYFVGYAERSRGFKFYNSTSRTFSEMGNARFLENIEFEG 324
           C A     +    KLD ++I C F+GY +   G++ ++   +      +  F E+     
Sbjct: 653 CRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTA 712

Query: 325 RNKSKDVVFEEENATIRNDVVTLPTIVSKVVLDNDTQDEVPTL----DVITSQDNNVDTS 384
            + S+ V    +N  I N  VT+P+  +       T DEV         +  Q   +D  
Sbjct: 713 ADMSEKV----KNGIIPN-FVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEG 772

Query: 385 LYPIDQPQHTQE--VSLRRSTKERRNSKGSTSGYIYMMADE 407
           +  ++ P   +E    LRRS + R  S+   S    +++D+
Sbjct: 773 VEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVLISDD 808

[Close]

BLAST of Moc05g17690 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 86.3 bits (212), Expect = 9.0e-16
Identity = 52/160 (32.50%), Postives = 83/160 (51.88%), Query Frame = 0


Query: 179 PSMNGGSERRNRTLKDMVRSMIAYSSLPESLCGEALKIAVYILNRVPSKA---ENKTPYK 238
           P +NG SER  RT+ +  R+M++ + L +S  GEA+  A Y++NR+PS+A    +KTPY+
Sbjct: 579 PQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYE 638

Query: 239 LWTKKRPSLRYLHIWGCPAEVRPYRPNEKKLDTRTISCYFVGYAERSRGFKFYNSTSRTF 298
           +W  K+P L++L ++G    V   +  + K D ++    FVGY     GFK +++ +  F
Sbjct: 639 MWHNKKPYLKHLRVFGATVYVH-IKNKQGKFDDKSFKSIFVGY--EPNGFKLWDAVNEKF 698

Query: 299 SEMGNARFLENIEFEGRNKSKDVVF-----EEENATIRND 331
               +    E      R    + VF     E EN    ND
Sbjct: 699 IVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPND 735

[Close]

BLAST of Moc05g17690 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-08
Identity = 48/165 (29.09%), Postives = 90/165 (54.55%), Query Frame = 0


Query: 179 PSMNGGSERRNRTLKDMVRSMIAYSSLPESLCGEALKIAVYILNRVPSK-AENKTPYKLW 238
           P  NG SER++R + +   ++++++S+P++    A  +AVY++NR+P+   + ++P++  
Sbjct: 619 PEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKL 678

Query: 239 TKKRPSLRYLHIWGCPAE--VRPYRPNEKKLDTRTISCYFVGYA-ERSRGFKFYNSTSRT 298
               P+   L ++GC     +RPY  N+ KLD ++  C F+GY+  +S     +  TSR 
Sbjct: 679 FGTSPNYDKLRVFGCACYPWLRPY--NQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRL 738

Query: 299 FSEMGNARFLEN-IEFEGRNKSKDVVFEE--ENATIRNDVVTLPT 337
           +    + RF EN   F     +   V E+  E++ + +   TLPT
Sbjct: 739 YISR-HVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPT 780

[Close]

BLAST of Moc05g17690 vs. ExPASy Swiss-Prot
Match: P92512 (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.9e-05
Identity = 29/82 (35.37%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 189 NRTLKDMVRSMIAYSSLPESLCGEALKIAVYILNRVPSKAEN-KTPYKLWTKKRPSLRYL 248
           NRT+ + VRSM+    LP++   +A   AV+I+N+ PS A N   P ++W +  P+  YL
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 249 HIWGCPAEVR----PYRPNEKK 266
             +GC A +       +P  KK
Sbjct: 62  RRFGCVAYIHCDEGKLKPRAKK 83

[Close]

BLAST of Moc05g17690 vs. ExPASy TrEMBL
Match: A0A151RFD4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_037529 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 9.8e-114
Identity = 230/422 (54.50%), Postives = 284/422 (67.30%), Query Frame = 0


Query: 22  LNEANFKDWKEDIQIVLGCMDLDIALRVDRPSSTEENPNKVEIEKGEYP----------- 81
           LN  NFK WKE ++I++GCMDLD+A RV++P+ T EN ++ ++EK E             
Sbjct: 2   LNGTNFKAWKEAVEIIIGCMDLDLAFRVEKPTPTPENLDEDKVEKWERSNRMCLMIMKRS 61

Query: 82  -------------------------------------LTKLTSLRYIGKGNIREYIMQMS 141
                                                  KL S+RY GKGNIR+YIM+MS
Sbjct: 62  VPEVFQGSISESQNDKGFLDAVEHYFTSNEKADARRLFAKLISMRYKGKGNIRDYIMEMS 121

Query: 142 NVAVKLKALKLEVSEDFLLHLVLNSLPAEYSHFRVSYNTQKDKWSLNELISHCVQEEERM 201
           N+A KLKALKLE+S+D L+HL L SLP ++  F+VSYNTQKDKW+LNELISH VQEEER 
Sbjct: 122 NLASKLKALKLELSDDLLVHLFLISLPTQFGQFKVSYNTQKDKWTLNELISHYVQEEERQ 181

Query: 202 QREKTRKCSHGFYLKE---FTQYMMLGKPSMNGGSERRNRTLKDMVRSMIAYSSLPESLC 261
           QREKT       +L+E     QY M GKPSMNG +ERRNRTLKDMVRSMI++SSLPESL 
Sbjct: 182 QREKTEL---ALFLRECGIAPQYTMPGKPSMNGVAERRNRTLKDMVRSMISHSSLPESLW 241

Query: 262 GEALKIAVYILNRVPSKAENKTPYKLWTKKRPSLRYLHIWGCPAEVRPYRPNEKKLDTRT 321
           GEALK AVYILNRVPSKA NKTPY+LWT KRPSL++LHIWGCPAE RPYRP+E KL++RT
Sbjct: 242 GEALKTAVYILNRVPSKAVNKTPYELWTGKRPSLKHLHIWGCPAEARPYRPHESKLESRT 301

Query: 322 ISCYFVGYAERSRGFKFYNSTSRTFSEMGNARFLENIEFEGRNKSKDVVFEEENATIRND 381
           +SCYFVGY ERSRG+KFYN T+R+F E GNARFLE++EF      ++VVFEEE     + 
Sbjct: 302 VSCYFVGYPERSRGYKFYNPTTRSFFETGNARFLEDVEFGKEENIRNVVFEEEPVIDSDQ 361

Query: 382 VVTLPTIVSKVVLDNDTQDEVPTLDVITSQDNNVDTSLYPIDQPQHTQEVSLRRSTKERR 393
           V+   TI     +  D    +P  D++ +QDN       PI+Q Q  QEV LRRST+ER+
Sbjct: 362 VLVPITIPVPTPVIGDNHGVIP--DIVPTQDNIEVLPQIPIEQAQQPQEVPLRRSTRERK 418

[Close]

BLAST of Moc05g17690 vs. ExPASy TrEMBL
Match: A0A438ILJ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3525 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 1.7e-89
Identity = 234/604 (38.74%), Postives = 291/604 (48.18%), Query Frame = 0


Query: 8   NSDNMSTQVNNIPRLNEANFKDWKEDIQIVLGCMDLDIALRVDRPS-----STEENPNKV 67
           ++ ++S  VNNIP LN  NFK WKE + IVLGCMDLD ALR DRPS     ST E  + +
Sbjct: 3   STSSISANVNNIPVLNGTNFKKWKEHVIIVLGCMDLDFALREDRPSDLTSASTAEQRSTM 62

Query: 68  E-----------IEKGEYP-----------------------------------LTKLTS 127
           E           I K   P                                   L+KL S
Sbjct: 63  EKWERSNRMSLMIMKHSIPEAIRGAIPEETQAKAFLDQIANRFAANEKVETSTILSKLVS 122

Query: 128 LRYIGKGNIREYIMQMSNVAVKLKALKLEVSEDFLLHLVLNSLPAEYSHFRVSYNTQKDK 187
           +RY GK NIREYIM+MSN+  +LKALKLE+SED L+HLVL SLP ++S F++SYNTQK+K
Sbjct: 123 MRYKGKENIREYIMEMSNLVTRLKALKLELSEDILVHLVLISLPTQFSPFKISYNTQKEK 182

Query: 188 WSLNELISHCVQEEERMQREKTRKC-----SHGF-------------------------- 247
           W+LNELI+ CVQEEER+++EK         S GF                          
Sbjct: 183 WTLNELIAQCVQEEERLKQEKIESAHLASTSQGFEINLAVVPTDTWWIDTGATTHISVTM 242

Query: 248 ------------------------------------------------------------ 307
                                                                       
Sbjct: 243 QGCLRSRMPTDGERYIYVGNGNKAAVKAIGLFILQLDSGYICGPFPTPSWNGQQYFITFI 302

Query: 308 ------------------------------------------------------------ 367
                                                                       
Sbjct: 303 DDYSRYGYLYLIHEKSQSLDVFKNFKAEVENQLSKKIKAVRSDRGGEYYGRYDRSGEQRP 362

Query: 368 -----YLKE---FTQYMMLGKPSMNGGSERRNRTLKDMVRSMIAYSSLPESLCGEALKIA 393
                YL E     QY M G PS NG +ERRNRTLKDMVRSMI++S+LPESL GEA+K A
Sbjct: 363 GPFAKYLMECGIVPQYTMPGTPSQNGVAERRNRTLKDMVRSMISHSTLPESLWGEAIKTA 422

[Close]

BLAST of Moc05g17690 vs. ExPASy TrEMBL
Match: A0A438FME3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2466 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.1e-88
Identity = 235/613 (38.34%), Postives = 293/613 (47.80%), Query Frame = 0


Query: 8   NSDNMSTQVNNIPRLNEANFKDWKEDIQIVLGCMDLDIALRVDRPS-----STEENPNKV 67
           ++ ++S  VNNIP LN  NFK WKE + IVLGCMDLD ALR DRPS     ST E  + +
Sbjct: 3   SASSISANVNNIPVLNGTNFKKWKEHVIIVLGCMDLDFALREDRPSDLTSASTAEQRSTM 62

Query: 68  E-----------IEKGEYP-----------------------------------LTKLTS 127
           E           I K   P                                   L+KL S
Sbjct: 63  EKWERSNRMSLMIMKHSIPEAIRGAIPEETQAKAFLDQIANRFAANEKVETSTILSKLVS 122

Query: 128 LRYIGKGNIREYIMQMSNVAVKLKALKLEVSEDFLLHLVLNSLPAEYSHFRVSYNTQKDK 187
           +RY GK NIREYIM+MSN+  +LKALKLE+SED L+HLVL SLP ++S F++SYNTQK+K
Sbjct: 123 MRYKGKENIREYIMEMSNLVTRLKALKLELSEDILVHLVLISLPTQFSPFKISYNTQKEK 182

Query: 188 WSLNELISHCVQEEERMQREKTRKC-----SHGF-------------------------- 247
           W+LNELI+ CVQEEER+++EK         S GF                          
Sbjct: 183 WTLNELIAQCVQEEERLKQEKIESAHLASTSQGFGTNKKRKRDNKGKQTAVSGTSKQKEQ 242

Query: 248 ------------------------------------------------------------ 307
                                                                       
Sbjct: 243 KKQDKEITCFFCKKAGHMKKTCTKYAAWREKKGTLLNFVCSEINLAVVPTDTWWIDTGAT 302

Query: 308 ------------------------------------------------------------ 367
                                                                       
Sbjct: 303 THISVTMQGCLRSRMPTDGERYIYVGNGNKNFKAEVENQLSKKIKAVRSDRGGEYYGRYD 362

Query: 368 ------------YLKE---FTQYMMLGKPSMNGGSERRNRTLKDMVRSMIAYSSLPESLC 393
                       YL E     QY M G PS NG +ERRNRTLKDMVRSMI++S+LPESL 
Sbjct: 363 GSGEQRPGPFAKYLMECGIVPQYTMPGTPSQNGVAERRNRTLKDMVRSMISHSTLPESLW 422

[Close]

BLAST of Moc05g17690 vs. ExPASy TrEMBL
Match: A0A438CDD1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_123 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.0e-87
Identity = 203/506 (40.12%), Postives = 268/506 (52.96%), Query Frame = 0


Query: 8   NSDNMSTQVNNIPRLNEANFKDWKEDIQIVLGCMDLDIALRVDRP---SSTEENPNKVEI 67
           +  ++S  VNNIP LN  NFK WKE + IVLGCM LD ALR DRP   +S      +  +
Sbjct: 3   SESSISANVNNIPVLNGTNFKKWKEHVIIVLGCMHLDYALREDRPADLTSANTAEQRAAM 62

Query: 68  EK---------------------GEYP---------------------------LTKLTS 127
           EK                     G  P                           L+K  S
Sbjct: 63  EKWERSNNMSLMVMKHLIPKAIRGAIPEETRAKTFLDQIENRFAANEKVETNTILSKFVS 122

Query: 128 LRYIGKGNIREYIMQMSNVAVKLKALKLEVSEDFLLHLVLNSLPAEYSHFRVSYNTQKDK 187
           +RY GK NIREYIM+MSN+  +LKALKL++SE  L+HLVL SLP ++S F+++YNTQK+K
Sbjct: 123 MRYKGKENIREYIMKMSNLVTRLKALKLKLSEYILMHLVLISLPTQFSSFKINYNTQKEK 182

Query: 188 WSLNELISHCVQEEERMQREK--------------------------------------- 247
           W+LNELI+ CVQEEER+++EK                                       
Sbjct: 183 WTLNELIAQCVQEEERLKQEKIENAHLASTSQRFGTSKKRKKDNKGKQTAFYGTSKQKVQ 242

Query: 248 ------------------------------------------------------------ 307
                                                                       
Sbjct: 243 KKQDKEITCFFCKKAGHMKKTCIKYAAWCEKKVEVENQLSKKIKVVRFDRGGEYYGRYDG 302

Query: 308 -TRKCSHGF--YLKE---FTQYMMLGKPSMNGGSERRNRTLKDMVRSMIAYSSLPESLCG 358
            + +C   F  YL E     QY MLG PS NG +ER N TLKDMVRSMI++S+LPESL  
Sbjct: 303 SSEQCPRPFAKYLMECGIIPQYTMLGTPSQNGVAERPNCTLKDMVRSMISHSTLPESLWA 362

[Close]

BLAST of Moc05g17690 vs. ExPASy TrEMBL
Match: A0A438JG16 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1022 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 6.0e-87
Identity = 229/606 (37.79%), Postives = 294/606 (48.51%), Query Frame = 0


Query: 8   NSDNMSTQVNNIPRLNEANFKDWKEDIQIVLGCMDLDIALRVDRPS-----STEENPNKV 67
           ++ ++S  VNNIP LN+ NFK WKE I IVLGCMDLD ALR DRPS     ST E  + +
Sbjct: 3   STSSISANVNNIPVLNDTNFKKWKEHIIIVLGCMDLDFALREDRPSDLTSASTVEQRSTM 62

Query: 68  E-----------IEKGEYP-----------------------------------LTKLTS 127
           E           I K   P                                   L+KL S
Sbjct: 63  EKWERSNRMSLMIMKHSIPEAIRGAILEETQAKAFLDQIANRFAANEKVETNTILSKLVS 122

Query: 128 LRYIGKGNIREYIMQMSNVAVKLKALKLEVSEDFLLHLVLNSLPAEYSHFRVSYNTQKDK 187
           +RY  K NIREYIM+MSN+  +LKALKLE+SED L+HLVL SLP ++S F++SYNTQK+K
Sbjct: 123 MRYKEKENIREYIMKMSNLVTRLKALKLELSEDILVHLVLISLPTQFSPFKISYNTQKEK 182

Query: 188 WSLNELISHCVQEEERMQREKTRKC-----SHGF-------------------------- 247
           W+LNELI+ CVQEEER+++EK         S GF                          
Sbjct: 183 WTLNELITQCVQEEERLKQEKIESAHLASTSQGFEINLAVVPTDTWWIDTGAITHISVTM 242

Query: 248 ------------------------------------------------------------ 307
                                                                       
Sbjct: 243 QGCLRSRMPTDGERYIYVGNGNKATVKAIGLFILQLDSGCTLDLEETFVVPSFRQNLIFV 302

Query: 308 ------------------------------------------------------------ 367
                                                                       
Sbjct: 303 SCLDKFGYCCSFGNGMSLDMFKNFKAEVENQLSKKIKVVRSDREGEYYGRYDGSGEQRPW 362

Query: 368 ----YLKE---FTQYMMLGKPSMNGGSERRNRTLKDMVRSMIAYSSLPESLCGEALKIAV 393
               YL E     QY M G PS NG +ERRNRT KDMVRSMI++S+LPESL GEA+K AV
Sbjct: 363 PFAKYLMECGIVPQYTMPGTPSQNGVAERRNRTFKDMVRSMISHSTLPESLWGEAIKTAV 422

[Close]

BLAST of Moc05g17690 vs. TAIR 10
Match: AT5G53670.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-12
Identity = 60/213 (28.17%), Postives = 90/213 (42.25%), Query Frame = 0


Query: 3   LVKVANSDNMSTQVNNIPRLNEANFKDWKEDIQIVLGCMDLDIALRVDRPSSTEE----- 62
           L  V    +  + V++IP L+ +NF +WKE + +VL  MDLD++L  +RPSS +E     
Sbjct: 22  LFSVLGYTSSLSNVDSIPMLSGSNFSEWKEHLLLVLALMDLDLSLMTERPSSPKELKHWD 81

Query: 63  NPNKVEIE----------KGEYP----------------------------LTKLTSLRY 122
             N+V I           +G  P                              + +S+ Y
Sbjct: 82  RSNRVSIMIMKIRIPQGFRGVVPDDVTTAKDFLASLENFFAKNEEAERSRVQAESSSMSY 141

Query: 123 IGKGNIREYIMQMSNVAVKLKALKLE--VSEDFLL-HLVLNSLPAEYSHFRVSYNTQKDK 157
           I   N+RE IM+M  +  K K L +    S D +L H  +  LP +Y   +  Y+  + K
Sbjct: 142 IENENVRELIMRMKTLGAKRKRLGINNIFSNDMMLAHCAVKMLPLQYISLKNVYSCLEGK 201

[Close]

BLAST of Moc05g17690 vs. TAIR 10
Match: AT5G53690.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 6.0e-07
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 115 VLNSLPAEYSHFRVSYNTQKDKWSLNELISHCVQEEERMQREK 158
           VL+SLP++Y   R +Y+  K +WS ++LISHCVQEEER+  EK
Sbjct: 5   VLDSLPSDYDLLRKTYSRMKLEWSTHDLISHCVQEEERLTNEK 47

[Close]

BLAST of Moc05g17690 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 1.3e-06
Identity = 29/82 (35.37%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 189 NRTLKDMVRSMIAYSSLPESLCGEALKIAVYILNRVPSKAEN-KTPYKLWTKKRPSLRYL 248
           NRT+ + VRSM+    LP++   +A   AV+I+N+ PS A N   P ++W +  P+  YL
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 249 HIWGCPAEVR----PYRPNEKK 266
             +GC A +       +P  KK
Sbjct: 62  RRFGCVAYIHCDEGKLKPRAKK 83

The following BLAST results are available for this feature:

BLAST of Moc05g17690 vs. NCBI nr


Match Name	E-value	Identity	Description
KYP41105.1	2.0e-113	54.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
RVW97553.1	3.5e-89	38.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW61151.1	2.2e-88	38.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW21227.1	4.2e-87	40.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX07895.1	1.2e-86	37.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Moc05g17690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.7e-19	27.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	9.0e-16	32.50	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.4e-08	29.09	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92512	1.9e-05	35.37	Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Moc05g17690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A151RFD4	9.8e-114	54.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A438ILJ1	1.7e-89	38.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438FME3	1.1e-88	38.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438CDD1	2.0e-87	40.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438JG16	6.0e-87	37.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Moc05g17690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53670.1	3.6e-12	28.17	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G53690.1	6.0e-07	55.81	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]
ATMG00710.1	1.3e-06	35.37	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 72..155 e-value: 7.6E-15 score: 54.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 376..396
None	No IPR available	PANTHER	PTHR35317:SF3	TRANSMEMBRANE PROTEIN	coord: 16..58 coord: 69..162
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 69..162
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 16..58
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 170..251 e-value: 1.2E-11 score: 46.3
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 172..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g17690.1	Moc05g17690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding