Moc05g17580 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g17580
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionDNA-directed DNA polymerase
Locationchr5: 13016497 .. 13017313 (-)
RNA-Seq ExpressionMoc05g17580
SyntenyMoc05g17580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAATTATGCTAAGTTTTTGAAAGATATAGTTTATAGGAAGAAAATGATAGGAGAGCATGAACTGGTAGCCATGACAAAATGTAGTAGTGAAGCTGTAGGCAGCCCGCTACCCATGAAACGTAACGATCCTGGCAGTTTTACCATTGCATGTTCCATAGGAGGAAAAAACTTAGGTAGGGCATTATGTGACCTAGGCGCTAGCATTAATCTTATGCCATTATCAGTTTTCAAATCTTTAGGCATAGGAGAAGCTAGACCTACTTACGGTTACCCTCCAACTAGCAGATACATCTATCATAAGACTTGAGGGAAAGATAGAAGATGTTTTAGTCCAGGTGGACAAATTCATTTTCCCTACGGACTTTATCATTCTAGATTGCGAGGCGGACTTAGACGTTCCCATTATTTTGGGAAGACCATTTCTAGCCACTGGGGATACAGTTTTTAATGTGAGGAAGGGAGAAATTACAATGAGGGTAAATAATGAAGAAGTTAAATTTAACGTTCTAGACGCCATGAAATTACCAAGAGACTTTGAAGAATGCTCTTCTATAAATAGCTTGAATCCTGTTATGTTTGATGAGTTTTATGACTTGTTAGTTACAGAGATTGAAGAAGAGCTTAATAAGATAGCAGAAGGACTGGAAGATGTGATTAATCCTGTTGAAAAAATACAAAAAGAAGAATGCAAGTCGTTACTTCCGTCCATAGTGGAACCACCCACGTTGGAGCAGAAGCCATTGCCGTCGCATTTGAAATATGTGTATCTAGGGGATAACGACACTTTACCAGTTATTATAGCCTCCAATTAA

mRNA sequence

ATGCCAAATTATGCTAAGTTTTTGAAAGATATAGTTTATAGGAAGAAAATGATAGGAGAGCATGAACTGGTAGCCATGACAAAATGTAGTAGTGAAGCTGTAGGCAGCCCGCTACCCATGAAACGTAACGATCCTGGCAGTTTTACCATTGCATGTTCCATAGGAGGAAAAAACTTAGACGCCATGAAATTACCAAGAGACTTTGAAGAATGCTCTTCTATAAATAGCTTGAATCCTGTTATGTTTGATGAGTTTTATGACTTGTTAGTTACAGAGATTGAAGAAGAGCTTAATAAGATAGCAGAAGGACTGGAAGATGTGATTAATCCTGTTGAAAAAATACAAAAAGAAGAATGCAAGTCGTTACTTCCGTCCATAGTGGAACCACCCACGTTGGAGCAGAAGCCATTGCCGTCGCATTTGAAATATGTGTATCTAGGGGATAACGACACTTTACCAGTTATTATAGCCTCCAATTAA

Coding sequence (CDS)

ATGCCAAATTATGCTAAGTTTTTGAAAGATATAGTTTATAGGAAGAAAATGATAGGAGAGCATGAACTGGTAGCCATGACAAAATGTAGTAGTGAAGCTGTAGGCAGCCCGCTACCCATGAAACGTAACGATCCTGGCAGTTTTACCATTGCATGTTCCATAGGAGGAAAAAACTTAGACGCCATGAAATTACCAAGAGACTTTGAAGAATGCTCTTCTATAAATAGCTTGAATCCTGTTATGTTTGATGAGTTTTATGACTTGTTAGTTACAGAGATTGAAGAAGAGCTTAATAAGATAGCAGAAGGACTGGAAGATGTGATTAATCCTGTTGAAAAAATACAAAAAGAAGAATGCAAGTCGTTACTTCCGTCCATAGTGGAACCACCCACGTTGGAGCAGAAGCCATTGCCGTCGCATTTGAAATATGTGTATCTAGGGGATAACGACACTTTACCAGTTATTATAGCCTCCAATTAA

Protein sequence

MPNYAKFLKDIVYRKKMIGEHELVAMTKCSSEAVGSPLPMKRNDPGSFTIACSIGGKNLDAMKLPRDFEECSSINSLNPVMFDEFYDLLVTEIEEELNKIAEGLEDVINPVEKIQKEECKSLLPSIVEPPTLEQKPLPSHLKYVYLGDNDTLPVIIASN
Homology
BLAST of Moc05g17580 vs. NCBI nr
Match: XP_022151603.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111019515 [Momordica charantia])

HSP 1 Score: 165.6 bits (418), Expect = 3.4e-37
Identity = 91/134 (67.91%), Postives = 94/134 (70.15%), Query Frame = 0

Query: 26  MTKCSSEAVGSPLPMKRNDPGSFTIACSIGGKNLDAMKLPRDFEECSSINSLNPVMFDEF 85
           MTKCSS AVGSPLPMK NDPGSFTI  SIGGKNL                          
Sbjct: 1   MTKCSSAAVGSPLPMKCNDPGSFTIPYSIGGKNL-------------------------- 60

Query: 86  YDLLVTEIEEELNKIAEGLEDVINPVEKIQKEECKSLLPSIVEPPTLEQKPLPSHLKYVY 145
                 EIEEEL+KIAEG EDV +PVEKIQKEECKSLLPSIVEPPTLEQKPLPSHLKY Y
Sbjct: 61  ------EIEEELDKIAEGPEDVTDPVEKIQKEECKSLLPSIVEPPTLEQKPLPSHLKYAY 102

Query: 146 LGDNDTLPVIIASN 160
           LGDNDTLPVI+ SN
Sbjct: 121 LGDNDTLPVIJXSN 102

BLAST of Moc05g17580 vs. NCBI nr
Match: XP_030483376.1 (uncharacterized protein LOC115699972 [Cannabis sativa])

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-22
Identity = 81/230 (35.22%), Postives = 113/230 (49.13%), Query Frame = 0

Query: 1   MPNYAKFLKDIVYRKKMIGEHELVAMTKCSSEAVGSPLPMKRNDPGSFTIACSIGGKNLD 60
           MPNY KFLKDI+ +K+ +GE E VA+T+  S  + S +P K  DPGSFTI CSIGG+++ 
Sbjct: 140 MPNYVKFLKDILTKKRRLGEFETVALTEGCSAMLKSKIPPKLKDPGSFTIPCSIGGRDVG 199

Query: 61  ---------------------------------------------------AMKLPRDFE 120
                                                               ++L   F 
Sbjct: 200 RALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMAHPEGKIEDVLVLRLTSSFS 259

Query: 121 ECSSINSLNPVMFDEF-------------YDLLVTEIEEELNKIA--EGLEDVIN---PV 160
           + + I+ ++ ++ ++F             +D L    E+E N++A  E L+ + N   P 
Sbjct: 260 KSAPISVIDSIVAEKFHKEAWRDEKFISSFDELEDLSEDEDNQVAWVEPLQPIPNFKKPF 319

BLAST of Moc05g17580 vs. NCBI nr
Match: XP_022155996.1 (uncharacterized protein LOC111022971 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-19
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 0

Query: 1   MPNYAKFLKDIVYRKKMIGEHELVAMTKCSSEAVGSPLPMKRNDPGSFTIACSIGGKNL 60
           MPNYAKFLKDIV RKK +GEHE+VAMTKCSSEAVGSPLP+K  DP SFTI CSIGGKNL
Sbjct: 137 MPNYAKFLKDIVSRKKKLGEHEMVAMTKCSSEAVGSPLPIKCKDPDSFTIPCSIGGKNL 195

BLAST of Moc05g17580 vs. NCBI nr
Match: XP_012830525.1 (PREDICTED: uncharacterized protein LOC105951621, partial [Erythranthe guttata])

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-17
Identity = 69/222 (31.08%), Postives = 107/222 (48.20%), Query Frame = 0

Query: 1   MPNYAKFLKDIVYRKKMIGEHELVAMTKCSSEAVGSPLPMKRNDPGSFTIACSIG----- 60
           MP++ KFLKD+V +K+  GEHE++A+T+  S  +  P+P K  DPG FTI  +IG     
Sbjct: 121 MPHWVKFLKDMVSKKRKFGEHEMIALTEQCSAILTRPIPPKLGDPGKFTIPVAIGDFVVL 180

Query: 61  -------------------GKNL----------------------DAMKLPRDFEECSSI 120
                              G+ +                        MK P++ +EC + 
Sbjct: 181 DTEEDKEIPLILGRPFLRTGRTIIDVYNGILSMSLGDETIKFDVFRTMKHPQEVDECFAF 240

Query: 121 NSLNPVMFDEFYDLLVTEIEEEL--------NKIAEGL--EDVINPVEKIQKEECKSLL- 160
           + L+ + FD    L+   +E  L         ++ E L   D   P+ + + E  ++ + 
Sbjct: 241 DVLDQLNFDFVEPLIADPLEASLCVGTSVEEEEVTEQLCWLDSAKPLSRPRFESLETEIP 300

BLAST of Moc05g17580 vs. NCBI nr
Match: XP_022147177.1 (uncharacterized protein LOC111016189 [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 3.0e-17
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0

Query: 1   MPNYAKFLKDIVYRKKMIGEHELVAMTKCSSEAVGSPLPMKRNDPGSFTIACSIGGKNL 60
           M NYAKFLKDIV  KK +GEHE+VAMTKCSSEAVGSPLP++  DPGSFTI C IGGKNL
Sbjct: 111 MSNYAKFLKDIVSIKKKLGEHEMVAMTKCSSEAVGSPLPIQCKDPGSFTIPCPIGGKNL 169

BLAST of Moc05g17580 vs. ExPASy TrEMBL
Match: A0A6J1DCL7 (LOW QUALITY PROTEIN: uncharacterized protein LOC111019515 OS=Momordica charantia OX=3673 GN=LOC111019515 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 2.2e-37
Identity = 91/134 (67.91%), Postives = 94/134 (70.15%), Query Frame = 0

Query: 26  MTKCSSEAVGSPLPMKRNDPGSFTIACSIGGKNLDAMKLPRDFEECSSINSLNPVMFDEF 85
           MTKCSS AVGSPLPMK NDPGSFTI  SIGGKNL                          
Sbjct: 1   MTKCSSAAVGSPLPMKCNDPGSFTIPYSIGGKNL-------------------------- 60

Query: 86  YDLLVTEIEEELNKIAEGLEDVINPVEKIQKEECKSLLPSIVEPPTLEQKPLPSHLKYVY 145
                 EIEEEL+KIAEG EDV +PVEKIQKEECKSLLPSIVEPPTLEQKPLPSHLKY Y
Sbjct: 61  ------EIEEELDKIAEGPEDVTDPVEKIQKEECKSLLPSIVEPPTLEQKPLPSHLKYAY 102

Query: 146 LGDNDTLPVIIASN 160
           LGDNDTLPVI+ SN
Sbjct: 121 LGDNDTLPVILXSN 102

BLAST of Moc05g17580 vs. ExPASy TrEMBL
Match: A0A6J1DTH7 (uncharacterized protein LOC111022971 OS=Momordica charantia OX=3673 GN=LOC111022971 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 0

Query: 1   MPNYAKFLKDIVYRKKMIGEHELVAMTKCSSEAVGSPLPMKRNDPGSFTIACSIGGKNL 60
           MPNYAKFLKDIV RKK +GEHE+VAMTKCSSEAVGSPLP+K  DP SFTI CSIGGKNL
Sbjct: 137 MPNYAKFLKDIVSRKKKLGEHEMVAMTKCSSEAVGSPLPIKCKDPDSFTIPCSIGGKNL 195

BLAST of Moc05g17580 vs. ExPASy TrEMBL
Match: A0A6J1D1N1 (uncharacterized protein LOC111016189 OS=Momordica charantia OX=3673 GN=LOC111016189 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-17
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0

Query: 1   MPNYAKFLKDIVYRKKMIGEHELVAMTKCSSEAVGSPLPMKRNDPGSFTIACSIGGKNL 60
           M NYAKFLKDIV  KK +GEHE+VAMTKCSSEAVGSPLP++  DPGSFTI C IGGKNL
Sbjct: 111 MSNYAKFLKDIVSIKKKLGEHEMVAMTKCSSEAVGSPLPIQCKDPGSFTIPCPIGGKNL 169

BLAST of Moc05g17580 vs. ExPASy TrEMBL
Match: A0A6J1DQL0 (uncharacterized protein LOC111023423 OS=Momordica charantia OX=3673 GN=LOC111023423 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-17
Identity = 53/92 (57.61%), Postives = 60/92 (65.22%), Query Frame = 0

Query: 1   MPNYAKFLKDIVYRKKMIGEHELVAMTKCSSEAVGSPLPMKRNDPGSFTIACSIGGKNLD 60
           M NYA FLKDIV +KK +GEHE+VAM KC SEAVGSPLP+K  DPGSFTI CSIGGKNL 
Sbjct: 55  MSNYATFLKDIVSKKKKLGEHEMVAMAKCISEAVGSPLPIKCKDPGSFTIPCSIGGKNLG 114

Query: 61  AMKLPRDFEECSSINSLNPVMFDEFYDLLVTE 93
                     C    S+N V    F +L + E
Sbjct: 115 RAL-------CDLGASINLVPLSVFKELCIGE 139

BLAST of Moc05g17580 vs. ExPASy TrEMBL
Match: A0A5D3BM69 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold316G00120 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16
Identity = 66/180 (36.67%), Postives = 100/180 (55.56%), Query Frame = 0

Query: 6   KFLKDIVYRKKMIGEHELVAMTKCSSEAVGSPLPMKRNDPGSFTIACSIG----GKNLDA 65
           KFLKDI+ +K+ I + + VA+T+ ++    + +P K  DPGSFTI  SIG    G+ L  
Sbjct: 14  KFLKDILVKKRKINDFKNVALTQATNNIFKNGVPKKMTDPGSFTIPYSIGILDLGRALCE 73

Query: 66  MK-----LPRDFEECSSINSLNP---------VMFDEFYDLLVTEIEEELNKIAEGLEDV 125
           ++     LP    +   I  + P         ++ + +Y+L  TE   E ++    LE+V
Sbjct: 74  LRATMNLLPLSIFKKLKIGEVQPTHMRLQHTDLLEEAYYELFSTEEFLEEDEPDYKLEEV 133

Query: 126 --------INPVEKIQKEECKSLLPSIVEPPTLEQKPLPSHLKYVYLGDNDTLPVIIASN 160
                     P++   K+E K + PSI EP  LE KPLP+HLKY YLG+NDTLP+II+++
Sbjct: 134 NTFFGKRKFEPLDLQTKDE-KKIKPSIKEPLELELKPLPNHLKYAYLGENDTLPIIISAH 192

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022151603.13.4e-3767.91LOW QUALITY PROTEIN: uncharacterized protein LOC111019515 [Momordica charantia][more]
XP_030483376.12.4e-2235.22uncharacterized protein LOC115699972 [Cannabis sativa][more]
XP_022155996.12.5e-1984.75uncharacterized protein LOC111022971 [Momordica charantia][more]
XP_012830525.12.3e-1731.08PREDICTED: uncharacterized protein LOC105951621, partial [Erythranthe guttata][more]
XP_022147177.13.0e-1779.66uncharacterized protein LOC111016189 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DCL72.2e-3767.91LOW QUALITY PROTEIN: uncharacterized protein LOC111019515 OS=Momordica charantia... [more]
A0A6J1DTH71.2e-1984.75uncharacterized protein LOC111022971 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1D1N11.5e-1779.66uncharacterized protein LOC111016189 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A6J1DQL02.5e-1757.61uncharacterized protein LOC111023423 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5D3BM692.1e-1636.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24559:SF373REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATEDcoord: 111..159
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 111..159

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g17580.1Moc05g17580.1mRNA