Moc05g16960 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g16960
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr5: 12697901 .. 12701625 (+)
RNA-Seq Expression	Moc05g16960
Synteny	Moc05g16960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTATGCAGCAGCGCCATGCCTCTGCGGGGACAGCGAACAGCGCCACGGCGCTGCATTGTAGCGTCGTGGCACTCTGCAGCTACTATTTTTTTTTTGCTGCAGCAGTGCCGCAGCGCTGCCCTCAAGCGCCGCGGCGCTGTCCCGGGTCTTTTTTCGACGTGTTCCGTTGTCCCAATTTGTGGTTCGAGTGTTGTTTCGGGCGTTTTTTCGGTTTTTTCTAATTAATTATTTATTTTGCTTTCTTAGGATGCCAAAATTCGGTCCAACTTTGCTATTTCAGTATTTTATGCATTTTGAGTATATATTTTAATTATATGGATATTGCATAATTTATGCCATGTAGTTTTAAAATCCCACCATAAGTTACATGCATAATGTGTATATTTGATATATAGTATGTATATATAATCGTGCATCATATAGTTATAAAGGTTATAATGTTTAAATGCATGTTTGATTTTCATGATTAATATAAGTGTCGTATTAATTAGATAAAAATAAAGTTGCATTGAGCAGGACATTACTTCAGTTAATATAATTGTTATATTGATATATGCTTACAATGCATGATTATAGTTTTAATTTCTTCAATTTTATAACTCTTATAAAATTTGGTAGATAGAAATTAAAATCTATAATGAAGAATTGCATGCAAACATAGGGTCTAAGTTAATTAGTTTTAAAGGGATTTAAAATTAATTAGACCTTAGGTTATATCTTCTAATATAATTAGGGGGTAGTCTTTTATTTTGTTTTAACTAGGTCTAAAATGAAATGATAAAAGACTAAATATAAAATATTGCCTATACGGGAACCCTGTCTAAGGAAGGTTCTGTCTAGGTTGAGGTATTTAAGCCGACCGTAAGAGAACACATCTACTTAGGAACCGACCTGGGGGTTGAATTAGTTAATATTTTACATACACGCAATAATGTCGTTAGTTCATTAAAACGTTTAATAAATTAAAACATTAATGTATAACTACCAATATAAAAAGTTATATTGGGCCAACTAAAAATTCACTTATTTAATTTTACTTACCCGAATTCACTTAGTTCATCTCGCTTACCTGGGATTTATCTAACTAATATACCTTAGTCTTAGAATGTTAAGCGGGAGCAAAAGAGAATATGTAATATACCATCTATATGTTTGATATACAAGGTGTATGTAACATATTTTTCTCTCATTCTCACGTTCTCCTTTATTATTGCACTCCTAGCCGCGGAAAAACTTAACGGCGAGAATTACAAACAATGGAAATCGAATCTAAACATTATTCTCGTTATAGATGATCTTAGGTTTGTCTTGCAAGAGGATTGTTCTCAAGCTCCTGCGTCTAATGCCACTGTGGCGGTGCGCAACGTCTATGACAAATAGATCAAGGCCAAGGTCTACATCTTAGCGAGCATATCTGATGTGCTTGCTAAGAAGCACGAGGACATAGTCACCGCTAAGGAGATCATGGACTCGTTGCAGAGCATGTTTGGACAACCATCCTCACAGGCTCGACATGAAGCCCTTAAGTTCATTTTACAACTCCCGAATAAAGGAGGGCTCCTCAGTGCAAGAACATGTTCTCAACCTGATGGTCCACTTCAACGTGGCAGAGTCGAACGAGGCTGTCATAGACGAGAAGAGTCAGGTCAGCTTCATTATGGAATCTCTTTCAAAGAGTTTCCTGCCATTCCGTAGGAATGCGGTTATGAATAAGTTAGAGTACACTCTTACCACGTTCTTAAATGAGCTACAGACTTACCAGTCTCTTATGCAAAATAAGGGACAGGAAGGGGAGGCAAACGTTGCCACCTCAAAAAAGTTCTACCGAGGTTCGACCTTTGTAGCCAAATCTGTGCAATCCTCTTCTGGAAGTAAGACTTTTAAAGAAGAAGAAAGCTGCTGATAAGGGGTCTAGATCTGACCCCACTGCTGCCACTGCCCAGAAAGGCAAGGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATACGGTCGGGCAATAGAAACGCAACTGCCCAAAATACTTTGCCGAAAAGAAGAAAGCCAACGAAGGTAAATATGATTTACTTGTTTTGGAAACATGTTTAGTGGAGAACGATGACTCTGCCTAGATACTGGATTCAAGAGCCACTAATGACGTTTGTTCTTCATTTCAGGGAATTAGTTTCTGGAGGCAGCTTGACGTCGGAAAAATGACTCTCAAGGTCGAAACGGGAGAGGTCCTCTTAGTTGTGGCGGTAGGGGAGCTTAAGTTGCTTACAAACTAGAATATGTATATATTATTAGATAATGTGTACGTAGTTCCTAAAATTAAAAGGAACTTAATTTCACTTTCTTGTTTGTTAGAACATTTATATTCCATTTCTTTTAATTTAAATGAAGCGTTCATTTCAATAAATGGTGTCAACATTTGTTCTGTTTTGCTTGAAAACAATTTGTATGTGCTAAGACCAACCATAACTAAAGTAGTTTTAAATACTAAGTTGTTTAAAAATGCTAAAACTCAAATTAAAAGACAAAAAGTTTCTCACAAAGAAAATACCTATCTTTGGCACTTAAGATTAGGACACATTAATCTCAATAGGATTGGGAGGTTGGTTAAGAATGACATTCTAAGTGACTTAGAAAACGATTCTTTACCACCATGTGACTCTTGTCTTGAAGGCAAGATGACTAAAAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCCTTAGAAGTTATACATTCAGACCTTTCTGGTCCGATGAATGTTAGAGCTCGAGGAGGGTATGAAACTTCATCTCTTTAACGATGATTATTCAAGGTATGGTTATTTATACCTAATGCAACATAAGTCTGAAGCCCTTGAAAAGTTCAAGGAGTACAAGACTGAAGTTGAAAATCAATTAGGTAAAACCATTAAAACACTTCGATTCGATCGAGGTGGAGAGTATATGTACTTGAGATTTCAGGATCATATGATAGAACATGGAATCACGTTCCAACTCTCAGCCCCTGGTACACCTCAACAAAACAGTGTATCAGAAAGGAGAAACAGAACCCTGTTGGACATGGTTCGATCAATGATGAGCTATGCTCAGTTGCCTAACTCGTTTTAGAGTTACGCAGTGGATACTGTGGTTTACATTTTGAATGTAGTTCCATCAAAGAGTGTTTCTGAAACACTCTTTGAGCTATGGAAGGGTCATAAAGCTAGTTTACGTCACTTCTGTATTTGGGGATGCTCGACACACGTGCTCATGACTAACCCAAAAAACTGGAACCTCGTTCAAAAGTATGCATATTCGTACGTTACCTTAAAGGGACGAGAGGTGGTCTTTTCTTCGATCCACAAGAAAACAGAGTGTTTATATTGACAAATGCCTTCTTCTTGGAAGAATACCACGTTCGAGATCATAAACCACGAAGTAAGGTAGTGATAAACGAGATTTTCGAAGAGGCTACAAATACGTCAACAAGGGTTGTTGATCAAGCTGGCACTTCAATAAGAGTTGTTGATGACGCCATTACATCACATCAGTCATATCCACCTCAAGAATTGAGGGTGCCTCGACGTAGTGGGAGGATTGTGTCACAACCTGATCGCTATGTGGGTTTAACTGAAACCAAAGTTGTCATACCTGATGACGGCGTCGAGGATCCATTCACCTACAAAAAGACAATGGAAGATGCGGACAAGGACAAATGGGTCAAAGCTATGGACCTGTAA

mRNA sequence

ATGGCGCTATGCAGCAGCGCCATGCCTCTGCGGGGACAGCGAACAGCGCCACGGCGCTGCATTGTAGCGTCGTGGCACTCTGCAGCTACTATTTTTTTTTTGCTGCAGCAGTGCCGCAGCGCTGCCCTCAAGCGCCGCGGCGCTGTCCCGGGTCTTTTTTCGACGTGTTCCGTTGTCCCAATTTGTGCCGCGGAAAAACTTAACGGCGAGAATTACAAACAATGGAAATCGAATCTAAACATTATTCTCGTTATAGATGATCTTAGGTTTGTCTTGCAAGAGGATTGTTCTCAAGCTCCTGCGTCTAATGCCACTGTGGCGAAGCACGAGGACATAGTCACCGCTAAGGAGATCATGGACTCGTTGCAGAGCATGTTTGGACAACCATCCTCACAGGCTCGACATGAAGCCCTTAAGTTCATTTTACAACTCCCGAATAAAGGAGGGCTCCTCAGTGCAAGAACATGTTCTCAACCTGATGGTCCACTTCAACGTGGCAGAGTCGAACGAGGCTGTCATAGACGAGAAGAGTCAGTAAGACTTTTAAAGAAGAAGAAAGCTGCTGATAAGGGGTCTAGATCTGACCCCACTGCTGCCACTGCCCAGAAAGGCAAGGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATACGGGAATTAGTTTCTGGAGGCAGCTTGACGTCGGAAAAATGACTCTCAAGGTCGAAACGGGAGAGGTCCTCTTAGTTGTGGCGGTAGTGATAAACGAGATTTTCGAAGAGGCTACAAATACGTCAACAAGGGTTGTTGATCAAGCTGGCACTTCAATAAGAGTTGTTGATGACGCCATTACATCACATCAGTCATATCCACCTCAAGAATTGAGGGTGCCTCGACGTAGTGGGAGGATTGTGTCACAACCTGATCGCTATGTGGGTTTAACTGAAACCAAAGTTGTCATACCTGATGACGGCGTCGAGGATCCATTCACCTACAAAAAGACAATGGAAGATGCGGACAAGGACAAATGGGTCAAAGCTATGGACCTGTAA

Coding sequence (CDS)

ATGGCGCTATGCAGCAGCGCCATGCCTCTGCGGGGACAGCGAACAGCGCCACGGCGCTGCATTGTAGCGTCGTGGCACTCTGCAGCTACTATTTTTTTTTTGCTGCAGCAGTGCCGCAGCGCTGCCCTCAAGCGCCGCGGCGCTGTCCCGGGTCTTTTTTCGACGTGTTCCGTTGTCCCAATTTGTGCCGCGGAAAAACTTAACGGCGAGAATTACAAACAATGGAAATCGAATCTAAACATTATTCTCGTTATAGATGATCTTAGGTTTGTCTTGCAAGAGGATTGTTCTCAAGCTCCTGCGTCTAATGCCACTGTGGCGAAGCACGAGGACATAGTCACCGCTAAGGAGATCATGGACTCGTTGCAGAGCATGTTTGGACAACCATCCTCACAGGCTCGACATGAAGCCCTTAAGTTCATTTTACAACTCCCGAATAAAGGAGGGCTCCTCAGTGCAAGAACATGTTCTCAACCTGATGGTCCACTTCAACGTGGCAGAGTCGAACGAGGCTGTCATAGACGAGAAGAGTCAGTAAGACTTTTAAAGAAGAAGAAAGCTGCTGATAAGGGGTCTAGATCTGACCCCACTGCTGCCACTGCCCAGAAAGGCAAGGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATACGGGAATTAGTTTCTGGAGGCAGCTTGACGTCGGAAAAATGACTCTCAAGGTCGAAACGGGAGAGGTCCTCTTAGTTGTGGCGGTAGTGATAAACGAGATTTTCGAAGAGGCTACAAATACGTCAACAAGGGTTGTTGATCAAGCTGGCACTTCAATAAGAGTTGTTGATGACGCCATTACATCACATCAGTCATATCCACCTCAAGAATTGAGGGTGCCTCGACGTAGTGGGAGGATTGTGTCACAACCTGATCGCTATGTGGGTTTAACTGAAACCAAAGTTGTCATACCTGATGACGGCGTCGAGGATCCATTCACCTACAAAAAGACAATGGAAGATGCGGACAAGGACAAATGGGTCAAAGCTATGGACCTGTAA

Protein sequence

MALCSSAMPLRGQRTAPRRCIVASWHSAATIFFLLQQCRSAALKRRGAVPGLFSTCSVVPICAAEKLNGENYKQWKSNLNIILVIDDLRFVLQEDCSQAPASNATVAKHEDIVTAKEIMDSLQSMFGQPSSQARHEALKFILQLPNKGGLLSARTCSQPDGPLQRGRVERGCHRREESVRLLKKKKAADKGSRSDPTAATAQKGKAKVAEKGKCFHCNTGISFWRQLDVGKMTLKVETGEVLLVVAVVINEIFEEATNTSTRVVDQAGTSIRVVDDAITSHQSYPPQELRVPRRSGRIVSQPDRYVGLTETKVVIPDDGVEDPFTYKKTMEDADKDKWVKAMDL

Homology

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BLAST of Moc05g16960 vs. NCBI nr
Match: KAA0066192.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK01222.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.5 bits (415), Expect = 1.7e-36
Identity = 115/306 (37.58%), Postives = 152/306 (49.67%), Query Frame = 0


Query: 112 IVTAKEIMDSLQSMFGQPSSQARHEALKFILQLPNKGGL--------LSARTCSQPDGPL 171
           +VTA++IMD L+ MFGQ S Q + EA+K++  +  K           +      Q +G  
Sbjct: 1   MVTARQIMDFLREMFGQSSIQIKQEAIKYVYNVHMKEDQAVREHVLDMIVNFNGQKEGEA 60

Query: 172 QRGRVERGCHRREESVRLLKKKKAADKGSRSDPTAATAQKGKAKVAEKGKCFHCNTG--- 231
                 R       S ++  +K     G R  PT A   KGKAKVA KGKCFHCN     
Sbjct: 61  NFAHSRRFAPSSFGSKKIQNRK----GGKRKGPTVAAEGKGKAKVAIKGKCFHCNVDGHW 120

Query: 232 ---------------------------ISFWRQLDVGKMTLKVETGEVLLV--------- 291
                                       ++++QL+ G+MTLKV TG+V+           
Sbjct: 121 KRNCPKYLTKKKEKEGATNHVCYSLQKTNYFKQLEEGEMTLKVGTGDVIAAHAPKETRDG 180

Query: 292 ---------VAVVINEIF-----------------EEATNTSTRVVDQAGTSIRVVDDAI 345
                    V V  N  F                  +A + ST+VV++ G S R VD+  
Sbjct: 181 LFFDPQENKVFVSTNATFLDENHMTDHKPQSKLVLNKANDESTKVVNEVGPSSR-VDETT 240

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BLAST of Moc05g16960 vs. NCBI nr
Match: KAA0054281.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 2.8e-36
Identity = 120/382 (31.41%), Postives = 167/382 (43.72%), Query Frame = 0


Query: 57  SVVPICAAEKLNGENYKQWKSNLNIILVIDDLRFVLQEDCSQAPASNAT----------- 116
           S+V + A EKLNG+NY  WKSNLN  L++DDLRFVL E+C Q PASNA            
Sbjct: 4   SIVQLLAFEKLNGDNYAAWKSNLNTKLMVDDLRFVLTEECPQTPASNANRTSRKAYDRWI 63

Query: 117 ------------------VAKHEDIVTAKEIMDSLQSMFGQPSSQARHEALKFILQLPNK 176
                               +HE + T KEIMDSL+ MFGQP    RHEA+K+I      
Sbjct: 64  KANEKAHVYIFASMSDVLAKRHESLATTKEIMDSLKGMFGQPEWSLRHEAIKYI------ 123

Query: 177 GGLLSARTCSQPDGPLQRGRVERGCHRREESVRLLKKKKAADKGSRSDPTAATAQKGKAK 236
                              R++     RE  + ++     A+    +   A +     +K
Sbjct: 124 ----------------YTKRMKEETSVREHVLDMMMHFNIAEVNGGAIDEAISV----SK 183

Query: 237 VAEKGKCFHCNTGISFWRQLDVGKMTLKVETGEVLLV-------VAVVI----------- 296
           +  K          S W++L  G++TLKV TGE++L        +A+ I           
Sbjct: 184 ILPKEN--------SSWKRLSKGEITLKVGTGEMVLAKAGYALEIAIYILNNVLSKSVSK 243

Query: 297 --------------------------NEIFEEATNT---------------------STR 345
                                     N++F     T                     S  
Sbjct: 244 TPYELWKGRKGYPKESKGGLFYDAQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKN 303

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BLAST of Moc05g16960 vs. NCBI nr
Match: TYJ97035.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 4.1e-35
Identity = 115/343 (33.53%), Postives = 158/343 (46.06%), Query Frame = 0


Query: 57  SVVPICAAEKLNGENYKQWKSNLNIILVIDDLRFVLQEDCSQAPASNAT----------- 116
           S+V + A EKLNG+NY  WKSNLN ILV+DDLRFVL E+C Q P+SNA+           
Sbjct: 4   SIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPQTPSSNASQTSRKAYDRWI 63

Query: 117 ------------------VAKHEDIVTAKEIMDSLQSMFGQPSSQARHEALKFILQLPNK 176
                               KHE + TAKEIMDSL+ MFGQP    RHE +K+I     K
Sbjct: 64  KANEKACVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHETIKYIYIKRMK 123

Query: 177 GG----------LLSARTCSQPDGPLQRGRVERGCHRREESVRLLKKKKAADKGSRSDPT 236
            G          ++         G +                 +L +  A+      +PT
Sbjct: 124 EGTSIKEHVLDMMMHFNIFEVNGGAIDEANQVSFILESLPKSFILFQTNASLNKIEFNPT 183

Query: 237 AATAQKGKAKVAEKGKCFHCNTGISFWRQLDVGKMTLKVETGEVLLV-----------VA 296
               +    +   KG      T +          M +K   G    +           V 
Sbjct: 184 TLLNELQHFQNLTKG--LRAKTPLELVHSDLCRPMNVKASEGYEYFISFIDDYSRYDHVY 243

Query: 297 VVIN-----EIFEEATNTSTRVVDQAGTSIRVVDDAITSHQSYPPQELRVPRRSGRIVSQ 345
           ++ N     E F+E         D+  +S +VVD      Q++P QEL  PRRSGR+V Q
Sbjct: 244 LIQNKPDSFEKFKEYKVEVENESDRPSSSTKVVDKTRNIGQTHPSQELGEPRRSGRVVRQ 303

[Close]

BLAST of Moc05g16960 vs. NCBI nr
Match: KAA0032993.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK21973.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 9.1e-35
Identity = 126/404 (31.19%), Postives = 174/404 (43.07%), Query Frame = 0


Query: 64  AEKLNGENYKQWKSNLNIILVIDDLRFVLQEDCSQAPASNATVA---------------- 123
           ++KLN + Y  WKSNLN ILV+DDLRFVL E+C Q PASNA  A                
Sbjct: 68  SKKLNDDKYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRASRKAYDRWIKANEKAR 127

Query: 124 -------------KHEDIVTAKEIMDSLQSMFGQPSSQARHEALKFI------------- 183
                        KHE + TAKEIMDSL+ MFGQP    RHE +K+I             
Sbjct: 128 VYILASMSDVLARKHESLATAKEIMDSLKGMFGQPEWSLRHETIKYIYTKHMEGTSVREH 187

Query: 184 ---------LQLPNKGGLLSA-RTCSQPDGPLQRGRV--ERGCHRREESVRLLKKKKAAD 243
                    +   N G +  A +  ++  G +    V   +G  +R  S     K KAA 
Sbjct: 188 VLDIMMHFNITEVNGGAIDEANQNLTKSKGKVVEANVATTKGKFKRGSSA----KSKAAP 247

Query: 244 KGSRSDPTAATAQKGKA-------KVAEKGKCFHCNTGISFWRQ---------------- 303
             S+S+      +KGK        K+ EKGKC+HC     + R                 
Sbjct: 248 --SKSNRNIDKKEKGKTPKQTKGKKITEKGKCYHCGENGHWLRNCPKYLAQKKAEKELQD 307

Query: 304 -----LDVGKMTLKVETG----------------------------EVLLVVAVVINEIF 345
                +D+      +E G                              ++  A   N  +
Sbjct: 308 RGGEYMDLRFQEYLIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSMMSFAQFSNSFW 367

[Close]

BLAST of Moc05g16960 vs. NCBI nr
Match: KAA0047422.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK04131.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 4.5e-34
Identity = 131/415 (31.57%), Postives = 177/415 (42.65%), Query Frame = 0


Query: 57  SVVPICAAEKLNGENYKQWKSNLNIILVIDDLRFVLQEDCSQAPASNATVA--------- 116
           S+V + A++KLNG+N   WKSNLN IL++DDLRFVL E+C Q P SNA  A         
Sbjct: 4   SIVQLLASKKLNGDNCATWKSNLNTILMVDDLRFVLTEECPQPPVSNANQASQKAYDRWI 63

Query: 117 --------------------KHEDIVTAKEIMDSLQSMFGQPSSQARHEALKFILQLPNK 176
                               KHE + TAKEIMDSL+ MFGQP    RHEA+K+I     K
Sbjct: 64  KENKKARVYILASMSDVLAKKHESLDTAKEIMDSLKGMFGQPEWSLRHEAIKYIYTKCMK 123

Query: 177 GG----------LLSARTCSQPDGPL----QRGRVERGCHRREESVRLLKKKKAADKGSR 236
            G          ++        DG +    QR +      ++E    +   K+   +GS 
Sbjct: 124 EGTSVREHVLDMMMHFNIAEVNDGAIDEANQRFQNLTKGKQKEVEANVATTKRKFKRGSS 183

Query: 237 SDPTAATAQ---------KGKA-------KVAEKGKCFHCNTGISFW----------RQL 296
           S   A  ++         KGK        K  EKGKC++C      W           QL
Sbjct: 184 SKSKAGPSKPIRKIEKNGKGKTPKQNKEKKTTEKGKCYYCGEN-GHWIGRLVKSGLLSQL 243

Query: 297 D-----------VGKMTLKVETGE--------------------------------VLLV 335
           +            GKMT +  TG+                                +L++
Sbjct: 244 EDNSLPPCDSCLEGKMTKRSFTGKGIRVKTPLELVHFDICEPMNVKARRGYEYFISLLMI 303

[Close]

BLAST of Moc05g16960 vs. ExPASy TrEMBL
Match: A0A5D3BR24 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75441G00140 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.0e-37
Identity = 115/306 (37.58%), Postives = 152/306 (49.67%), Query Frame = 0


Query: 112 IVTAKEIMDSLQSMFGQPSSQARHEALKFILQLPNKGGL--------LSARTCSQPDGPL 171
           +VTA++IMD L+ MFGQ S Q + EA+K++  +  K           +      Q +G  
Sbjct: 1   MVTARQIMDFLREMFGQSSIQIKQEAIKYVYNVHMKEDQAVREHVLDMIVNFNGQKEGEA 60

Query: 172 QRGRVERGCHRREESVRLLKKKKAADKGSRSDPTAATAQKGKAKVAEKGKCFHCNTG--- 231
                 R       S ++  +K     G R  PT A   KGKAKVA KGKCFHCN     
Sbjct: 61  NFAHSRRFAPSSFGSKKIQNRK----GGKRKGPTVAAEGKGKAKVAIKGKCFHCNVDGHW 120

Query: 232 ---------------------------ISFWRQLDVGKMTLKVETGEVLLV--------- 291
                                       ++++QL+ G+MTLKV TG+V+           
Sbjct: 121 KRNCPKYLTKKKEKEGATNHVCYSLQKTNYFKQLEEGEMTLKVGTGDVIAAHAPKETRDG 180

Query: 292 ---------VAVVINEIF-----------------EEATNTSTRVVDQAGTSIRVVDDAI 345
                    V V  N  F                  +A + ST+VV++ G S R VD+  
Sbjct: 181 LFFDPQENKVFVSTNATFLDENHMTDHKPQSKLVLNKANDESTKVVNEVGPSSR-VDETT 240

[Close]

BLAST of Moc05g16960 vs. ExPASy TrEMBL
Match: A0A5A7UL66 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G002390 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-36
Identity = 120/382 (31.41%), Postives = 167/382 (43.72%), Query Frame = 0


Query: 57  SVVPICAAEKLNGENYKQWKSNLNIILVIDDLRFVLQEDCSQAPASNAT----------- 116
           S+V + A EKLNG+NY  WKSNLN  L++DDLRFVL E+C Q PASNA            
Sbjct: 4   SIVQLLAFEKLNGDNYAAWKSNLNTKLMVDDLRFVLTEECPQTPASNANRTSRKAYDRWI 63

Query: 117 ------------------VAKHEDIVTAKEIMDSLQSMFGQPSSQARHEALKFILQLPNK 176
                               +HE + T KEIMDSL+ MFGQP    RHEA+K+I      
Sbjct: 64  KANEKAHVYIFASMSDVLAKRHESLATTKEIMDSLKGMFGQPEWSLRHEAIKYI------ 123

Query: 177 GGLLSARTCSQPDGPLQRGRVERGCHRREESVRLLKKKKAADKGSRSDPTAATAQKGKAK 236
                              R++     RE  + ++     A+    +   A +     +K
Sbjct: 124 ----------------YTKRMKEETSVREHVLDMMMHFNIAEVNGGAIDEAISV----SK 183

Query: 237 VAEKGKCFHCNTGISFWRQLDVGKMTLKVETGEVLLV-------VAVVI----------- 296
           +  K          S W++L  G++TLKV TGE++L        +A+ I           
Sbjct: 184 ILPKEN--------SSWKRLSKGEITLKVGTGEMVLAKAGYALEIAIYILNNVLSKSVSK 243

Query: 297 --------------------------NEIFEEATNT---------------------STR 345
                                     N++F     T                     S  
Sbjct: 244 TPYELWKGRKGYPKESKGGLFYDAQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKN 303

[Close]

BLAST of Moc05g16960 vs. ExPASy TrEMBL
Match: A0A5D3BF11 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00970 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-35
Identity = 115/343 (33.53%), Postives = 158/343 (46.06%), Query Frame = 0


Query: 57  SVVPICAAEKLNGENYKQWKSNLNIILVIDDLRFVLQEDCSQAPASNAT----------- 116
           S+V + A EKLNG+NY  WKSNLN ILV+DDLRFVL E+C Q P+SNA+           
Sbjct: 4   SIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPQTPSSNASQTSRKAYDRWI 63

Query: 117 ------------------VAKHEDIVTAKEIMDSLQSMFGQPSSQARHEALKFILQLPNK 176
                               KHE + TAKEIMDSL+ MFGQP    RHE +K+I     K
Sbjct: 64  KANEKACVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHETIKYIYIKRMK 123

Query: 177 GG----------LLSARTCSQPDGPLQRGRVERGCHRREESVRLLKKKKAADKGSRSDPT 236
            G          ++         G +                 +L +  A+      +PT
Sbjct: 124 EGTSIKEHVLDMMMHFNIFEVNGGAIDEANQVSFILESLPKSFILFQTNASLNKIEFNPT 183

Query: 237 AATAQKGKAKVAEKGKCFHCNTGISFWRQLDVGKMTLKVETGEVLLV-----------VA 296
               +    +   KG      T +          M +K   G    +           V 
Sbjct: 184 TLLNELQHFQNLTKG--LRAKTPLELVHSDLCRPMNVKASEGYEYFISFIDDYSRYDHVY 243

Query: 297 VVIN-----EIFEEATNTSTRVVDQAGTSIRVVDDAITSHQSYPPQELRVPRRSGRIVSQ 345
           ++ N     E F+E         D+  +S +VVD      Q++P QEL  PRRSGR+V Q
Sbjct: 244 LIQNKPDSFEKFKEYKVEVENESDRPSSSTKVVDKTRNIGQTHPSQELGEPRRSGRVVRQ 303

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BLAST of Moc05g16960 vs. ExPASy TrEMBL
Match: A0A5D3DEL0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00020 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.4e-35
Identity = 126/404 (31.19%), Postives = 174/404 (43.07%), Query Frame = 0


Query: 64  AEKLNGENYKQWKSNLNIILVIDDLRFVLQEDCSQAPASNATVA---------------- 123
           ++KLN + Y  WKSNLN ILV+DDLRFVL E+C Q PASNA  A                
Sbjct: 68  SKKLNDDKYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRASRKAYDRWIKANEKAR 127

Query: 124 -------------KHEDIVTAKEIMDSLQSMFGQPSSQARHEALKFI------------- 183
                        KHE + TAKEIMDSL+ MFGQP    RHE +K+I             
Sbjct: 128 VYILASMSDVLARKHESLATAKEIMDSLKGMFGQPEWSLRHETIKYIYTKHMEGTSVREH 187

Query: 184 ---------LQLPNKGGLLSA-RTCSQPDGPLQRGRV--ERGCHRREESVRLLKKKKAAD 243
                    +   N G +  A +  ++  G +    V   +G  +R  S     K KAA 
Sbjct: 188 VLDIMMHFNITEVNGGAIDEANQNLTKSKGKVVEANVATTKGKFKRGSSA----KSKAAP 247

Query: 244 KGSRSDPTAATAQKGKA-------KVAEKGKCFHCNTGISFWRQ---------------- 303
             S+S+      +KGK        K+ EKGKC+HC     + R                 
Sbjct: 248 --SKSNRNIDKKEKGKTPKQTKGKKITEKGKCYHCGENGHWLRNCPKYLAQKKAEKELQD 307

Query: 304 -----LDVGKMTLKVETG----------------------------EVLLVVAVVINEIF 345
                +D+      +E G                              ++  A   N  +
Sbjct: 308 RGGEYMDLRFQEYLIEHGIKSQLSAPNTPQQNGVSERRNRTLLDMVRSMMSFAQFSNSFW 367

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BLAST of Moc05g16960 vs. ExPASy TrEMBL
Match: A0A5D3BWP2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00740 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.2e-34
Identity = 131/415 (31.57%), Postives = 177/415 (42.65%), Query Frame = 0


Query: 57  SVVPICAAEKLNGENYKQWKSNLNIILVIDDLRFVLQEDCSQAPASNATVA--------- 116
           S+V + A++KLNG+N   WKSNLN IL++DDLRFVL E+C Q P SNA  A         
Sbjct: 4   SIVQLLASKKLNGDNCATWKSNLNTILMVDDLRFVLTEECPQPPVSNANQASQKAYDRWI 63

Query: 117 --------------------KHEDIVTAKEIMDSLQSMFGQPSSQARHEALKFILQLPNK 176
                               KHE + TAKEIMDSL+ MFGQP    RHEA+K+I     K
Sbjct: 64  KENKKARVYILASMSDVLAKKHESLDTAKEIMDSLKGMFGQPEWSLRHEAIKYIYTKCMK 123

Query: 177 GG----------LLSARTCSQPDGPL----QRGRVERGCHRREESVRLLKKKKAADKGSR 236
            G          ++        DG +    QR +      ++E    +   K+   +GS 
Sbjct: 124 EGTSVREHVLDMMMHFNIAEVNDGAIDEANQRFQNLTKGKQKEVEANVATTKRKFKRGSS 183

Query: 237 SDPTAATAQ---------KGKA-------KVAEKGKCFHCNTGISFW----------RQL 296
           S   A  ++         KGK        K  EKGKC++C      W           QL
Sbjct: 184 SKSKAGPSKPIRKIEKNGKGKTPKQNKEKKTTEKGKCYYCGEN-GHWIGRLVKSGLLSQL 243

Query: 297 D-----------VGKMTLKVETGE--------------------------------VLLV 335
           +            GKMT +  TG+                                +L++
Sbjct: 244 EDNSLPPCDSCLEGKMTKRSFTGKGIRVKTPLELVHFDICEPMNVKARRGYEYFISLLMI 303

The following BLAST results are available for this feature:

BLAST of Moc05g16960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066192.1	1.7e-36	37.58	gag/pol protein [Cucumis melo var. makuwa] >TYK01222.1 gag/pol protein [Cucumis ...	[more]
KAA0054281.1	2.8e-36	31.41	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ97035.1	4.1e-35	33.53	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0032993.1	9.1e-35	31.19	gag/pol protein [Cucumis melo var. makuwa] >TYK21973.1 gag/pol protein [Cucumis ...	[more]
KAA0047422.1	4.5e-34	31.57	gag/pol protein [Cucumis melo var. makuwa] >TYK04131.1 gag/pol protein [Cucumis ...	[more]

BLAST of Moc05g16960 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g16960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BR24	8.0e-37	37.58	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75441G00...	[more]
A0A5A7UL66	1.4e-36	31.41	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G0023...	[more]
A0A5D3BF11	2.0e-35	33.53	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G0097...	[more]
A0A5D3DEL0	4.4e-35	31.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G0002...	[more]
A0A5D3BWP2	2.2e-34	31.57	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G007...	[more]

BLAST of Moc05g16960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g16960.1	Moc05g16960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding