Moc05g16550 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g16550
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr5: 12444516 .. 12445567 (+)
RNA-Seq ExpressionMoc05g16550
SyntenyMoc05g16550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGCCGTCCGTTCGTTCACCACATTCCATCACTGGCCATCGAGCAAGACCTTTCAAATCTCTGCACCACTTACGACATCTCCGATTATGTCCTCATGCGCCTCCAATCTACGGCCGAAAGAATAGATACCCCTCCGCCTGGCTGGGTGAGTTTCTACCCGCAGATGTTTTGGAATGAGGTCAAGCTTCCCCTCTCCCTTTTGGCCCAGGTGTTCTTGGTTTTCGCTGACGTGGCTCCAACTCCCAACGCATGGGGAGCTTTGATGGCATTAGCCATCCTTTGGCCGGAATTGGGAGGGGGCAAAGCGATGACTCTCTCACTGCTGTCTACCATAACCATGATGAAATCTATAAGAAGCTTCCCCAGGTTCTTCAGCTTGAACTCCCGCTGAGGGTCACTTTTCAATGCTCCAACCTCGAACAAGAATTGGAAGGATCATTGGTTTCTCGTTGGAGAGCAGTGGTTAGTCGGTGACAGTTCGGTGGTCGGATGTGTGTTTAGTTGCTTCAGGGAGCACGGTTTGTTCTTAAAAAACTCCCCTTTCTTTTCTTTTTGGCTAGTGCGGCCTTCTAAGCTTCTGGTTTTTCTTGGTAGTATTCCTAGTGGGGCCCCTCCCGTCGCCTCTCGAACGGACAATGTTTTGAAGAAAATCCTTGCTATCCCTTGGACTCAAAGAATCCCTTCACTTATTACGATGAGTGAGAGGTTAGCCGATCATCGCTTGATCGGGAATCCCAATGGTCCAACTAGAGGCAACGATGAGCGTCCTGCCCCCCGTGTGGTTCTGACAGGTAGGGACGATGGCTTTTCTCCCTTTGGTGTTCGGCCATAATTTTTTTTACTGGTTTTTTTTGTACAAATCTTACGAAGCCACCATCCATCTCACCCACAAGACGCGAACTTGTAATTTGACCTATCCTTCAGATTGGCAAAGCTTCTCCGTGTGGCATGGTCAGAAATGGGAGCGCTACTTCGACTAATGTCGTGGCTCTTGTTTCTTCGGGCCCATCTGTCAGGGCTGATGGGGGAGCCCTTCAGTGGACATAG

mRNA sequence

ATGGCTCGCCGTCCGTTCGTTCACCACATTCCATCACTGGCCATCGAGCAAGACCTTTCAAATCTCTGCACCACTTACGACATCTCCGATTATGTCCTCATGCGCCTCCAATCTACGGCCGAAAGAATAGATACCCCTCCGCCTGGCTGGGTGAGTTTCTACCCGCAGATGTTTTGGAATGAGGTCAAGCTTCCCCTCTCCCTTTTGGCCCAGGTGTTCTTGGTTTTCGCTGACGTGGCTCCAACTCCCAACGCATGGGGAGCTTTGATGGCATTAGCCATCCTTTGGCCGGAATTGGGAGGGGGCAAAGCGATGACTCTCTCACTGCTGTCTACCATAACCATGATGAAATCTATAAGAAGCTTCCCCAGTATTCCTAGTGGGGCCCCTCCCGTCGCCTCTCGAACGGACAATGTTTTGAAGAAAATCCTTGCTATCCCTTGGACTCAAAGAATCCCTTCACTTATTACGATGAGTGAGAGGTTAGCCGATCATCGCTTGATCGGGAATCCCAATGGTCCAACTAGAGGCAACGATGAGCGTCCTGCCCCCCGTGTGGTTCTGACAGGTAGGGACGATGGCTTTTCTCCCTTTGGTATTGGCAAAGCTTCTCCGTGTGGCATGGTCAGAAATGGGAGCGCTACTTCGACTAATGTCGTGGCTCTTGTTTCTTCGGGCCCATCTGTCAGGGCTGATGGGGGAGCCCTTCAGTGGACATAG

Coding sequence (CDS)

ATGGCTCGCCGTCCGTTCGTTCACCACATTCCATCACTGGCCATCGAGCAAGACCTTTCAAATCTCTGCACCACTTACGACATCTCCGATTATGTCCTCATGCGCCTCCAATCTACGGCCGAAAGAATAGATACCCCTCCGCCTGGCTGGGTGAGTTTCTACCCGCAGATGTTTTGGAATGAGGTCAAGCTTCCCCTCTCCCTTTTGGCCCAGGTGTTCTTGGTTTTCGCTGACGTGGCTCCAACTCCCAACGCATGGGGAGCTTTGATGGCATTAGCCATCCTTTGGCCGGAATTGGGAGGGGGCAAAGCGATGACTCTCTCACTGCTGTCTACCATAACCATGATGAAATCTATAAGAAGCTTCCCCAGTATTCCTAGTGGGGCCCCTCCCGTCGCCTCTCGAACGGACAATGTTTTGAAGAAAATCCTTGCTATCCCTTGGACTCAAAGAATCCCTTCACTTATTACGATGAGTGAGAGGTTAGCCGATCATCGCTTGATCGGGAATCCCAATGGTCCAACTAGAGGCAACGATGAGCGTCCTGCCCCCCGTGTGGTTCTGACAGGTAGGGACGATGGCTTTTCTCCCTTTGGTATTGGCAAAGCTTCTCCGTGTGGCATGGTCAGAAATGGGAGCGCTACTTCGACTAATGTCGTGGCTCTTGTTTCTTCGGGCCCATCTGTCAGGGCTGATGGGGGAGCCCTTCAGTGGACATAG

Protein sequence

MARRPFVHHIPSLAIEQDLSNLCTTYDISDYVLMRLQSTAERIDTPPPGWVSFYPQMFWNEVKLPLSLLAQVFLVFADVAPTPNAWGALMALAILWPELGGGKAMTLSLLSTITMMKSIRSFPSIPSGAPPVASRTDNVLKKILAIPWTQRIPSLITMSERLADHRLIGNPNGPTRGNDERPAPRVVLTGRDDGFSPFGIGKASPCGMVRNGSATSTNVVALVSSGPSVRADGGALQWT
Homology
[Close]
BLAST of Moc05g16550 vs. NCBI nr
Match: XP_022141992.1 (uncharacterized protein LOC111012228 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 5.0e-16
Identity = 61/158 (38.61%), Postives = 80/158 (50.63%), Query Frame = 0 

Query: 90  MALAILWPELGGGKAMTLSLLSTITMMKSIRSF----------------PSI-------- 149
           M LAI++P L GG+ M+L LLST+T+MKSIR F                PS+        
Sbjct: 1   MGLAIVYPNLKGGEKMSLMLLSTLTLMKSIRGFHRFYSLSYHCGTLFSIPSLTKNWKDHW 60

Query: 150 ---------------------------PSGAPPVASRTDNVLKKILAIPWTQRIPSLITM 197
                                      P GAP V SR++NVLKKILAIP  +R+P+L+  
Sbjct: 61  SLVGDRRLVSDGSVVGCVASCFRDNIFPGGAPLVVSRSENVLKKILAIPMIERVPTLLIT 120

[Close]
BLAST of Moc05g16550 vs. NCBI nr
Match: XP_022159063.1 (uncharacterized protein LOC111025502, partial [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-07
Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 0 

Query: 11  PSLAIEQDLSNLCTTYDISDYVLMRLQSTAERIDTPPPGWVSFYPQMFWNEVKLPLSLLA 70
           PS   E  L +L   + I + +L+RL    ER D PP GWV+ Y +MF   ++LPL    
Sbjct: 48  PSRIPEHYLGSLRRGFAIPENILLRLPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFV 107

Query: 71  QVFLVFADVAP---TPNAWGALMALAILW 97
           Q FL    +AP    PN WG + ALAIL+
Sbjct: 108 QEFLFRTGLAPAQVAPNGWGVIFALAILF 136

[Close]
BLAST of Moc05g16550 vs. ExPASy TrEMBL
Match: A0A6J1CLC8 (uncharacterized protein LOC111012228 OS=Momordica charantia OX=3673 GN=LOC111012228 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-16
Identity = 61/158 (38.61%), Postives = 80/158 (50.63%), Query Frame = 0 

Query: 90  MALAILWPELGGGKAMTLSLLSTITMMKSIRSF----------------PSI-------- 149
           M LAI++P L GG+ M+L LLST+T+MKSIR F                PS+        
Sbjct: 1   MGLAIVYPNLKGGEKMSLMLLSTLTLMKSIRGFHRFYSLSYHCGTLFSIPSLTKNWKDHW 60

Query: 150 ---------------------------PSGAPPVASRTDNVLKKILAIPWTQRIPSLITM 197
                                      P GAP V SR++NVLKKILAIP  +R+P+L+  
Sbjct: 61  SLVGDRRLVSDGSVVGCVASCFRDNIFPGGAPLVVSRSENVLKKILAIPMIERVPTLLIT 120

[Close]
BLAST of Moc05g16550 vs. ExPASy TrEMBL
Match: A0A6J1DXS5 (uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025502 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-07
Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 0 

Query: 11  PSLAIEQDLSNLCTTYDISDYVLMRLQSTAERIDTPPPGWVSFYPQMFWNEVKLPLSLLA 70
           PS   E  L +L   + I + +L+RL    ER D PP GWV+ Y +MF   ++LPL    
Sbjct: 48  PSRIPEHYLGSLRRGFAIPENILLRLPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFV 107

Query: 71  QVFLVFADVAP---TPNAWGALMALAILW 97
           Q FL    +AP    PN WG + ALAIL+
Sbjct: 108 QEFLFRTGLAPAQVAPNGWGVIFALAILF 136

[Close]
BLAST of Moc05g16550 vs. ExPASy TrEMBL
Match: A0A7J7G146 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_030338 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-04
Identity = 35/93 (37.63%), Postives = 46/93 (49.46%), Query Frame = 0 

Query: 18  DLSNLCTTYDISDYVLMRLQSTAERIDTPPPGWVSFYPQMFWNEVKLPLSLLAQVFLVFA 77
           DL  +   Y I   V +RL +  ER     PG  S Y +     ++LPL  +    L   
Sbjct: 161 DLEAIRERYQIPAEVDLRLPTPEERPSMVKPGEFSLYEEALKGGLRLPLPQVVVDVLNRL 220

Query: 78  DVAP---TPNAWGALMALAILWPELGGGKAMTL 108
           +VAP    PNAW  LMA A  WP+  GG+AMT+
Sbjct: 221 EVAPGQLMPNAWKILMACASAWPKANGGEAMTI 253

The following BLAST results are available for this feature:
BLAST of Moc05g16550 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022141992.15.0e-1638.61uncharacterized protein LOC111012228 [Momordica charantia][more]
XP_022159063.13.3e-0741.57uncharacterized protein LOC111025502, partial [Momordica charantia][more]
BLAST of Moc05g16550 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc05g16550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CLC82.4e-1638.61uncharacterized protein LOC111012228 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A6J1DXS51.6e-0741.57uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A7J7G1466.2e-0437.63Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_030338 PE=4 SV=1[more]
BLAST of Moc05g16550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g16550.1Moc05g16550.1mRNA