Moc05g15810 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g15810
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr5: 11872014 .. 11873645 (-)
RNA-Seq ExpressionMoc05g15810
SyntenyMoc05g15810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGACACTATGTTGGGAAAATGCACCAGGCGCAATTCCTGACTTTTCTTGGGATTTGAGTTCTACTCTTTCACTACCGCTTTTGGTTGCTGCAGAGGCTAGGGTAACCTACAATCATATTCCTATTTGTGGTTACAATCCTAGAGAATATTTACCAACTCATTTACATTATGGGTCAGAGGGCCTATGCCTAGGACCATGTTTTATGCGCTTATTCATAAGTTACATCCCATATTGGTTTCCTATTATTTTACCTAACTCACCTTTCCCAAAAGTTAGGCTTTGGTGAATAAATCAAGTTCCCACTGGCCAAATGGAAAAAAGACGTAAAGAGAAGTTTTTAGAAACCAACCCAAAAAAGTGTCAGGCGCAATCTGACCAAAATCCTGAGCGTGTTGAAAATCAAATCATTTGACTAAGGCATTCCACAGGGAGGTTGATAACTAATTTAGAACATAATTAAATGAAAGTAAATGCACGGAAACATAAAGAAAGTATTTTCATTGAATTTAAATGATTAAATAAGCTGTACAAGGAGTTCTAGCTTGACCCTTTTCTCTCTCGAGCGTGAGGGGAGTTGAAACTCGCTAAAAAACTTTAAAATAACAGAATGAACAAAGAACAGAAGTAAGAATTCGAATTAAAAGCAATACGAAAGGTAAAAGCGTGAAAAACAAAGAAATGAACAACTAGAACATGAACATAACCCTAAAAACGTGTTCTACAACTAGAGAGCATCTAAAAGAAGATGAAATGAAGCTTAGAAGGGATGATTTGCTAAGGGATGGATGGCTTCCTTTTATAGGACCATAAGTTGGTTGAAACTCCCCTCCATTTTAGGTGGAAAAGGGTTGAGATTCATCTAACCACCTCGCTTGGATTTGGACTCACGGTTTTGAACATGTGGGAAATGTCCTCCTTGCCCTTCATTAATCAAAACGTGCGTCTTGACAAATTGCCCTCCAAAAATGCGCCGGGCGCAATTCTGCAAAAAACAGAATTCTGTTATTTTTCTTCCAACTTTGACCGCATTTATCTCATATTTTTCCTAAAGTACCATAGTTTGACTTTTATGAAGAAATAATCTATGTATGTTCTACTTTAAGAATATGTGGTACTTTTTAGCAAATAATAATGGGAAATGGGTCAAAAAAGTGGTCAGACAGGGCTACCGACACATGTTTCTGCAGTAAAAAGTCAACCCTAACAACAACCATATGGTCGGACACCTTTATATGCTCCATATTATTACCCAACGCCATACGGGTATAATCAGCCTGATGTGAACAATACAACTTCACATTACTCTCCTTATGCCTCTCAAAATTTTCGACCACCGGTCAGTCAAAATTTCCAACCTAGGAGCTAGCAGCATAATATATTCTATACCCAGGGGTAGCAGAATAATAGAGGGGCACGTAAACAGACTCAGTTTGACTCAGTCCCTACGACTTATATTGAGCTTCTGCCTCAGTTATTTCAGAATAATCAATTGGTCGATGTACCTGTAGATCCGATCAAGCCTCCATACCCAAGATGGTATGATGCAAATGTTCGCTGTGCCTATCACGCAGGAGCCATAGGGCATTCAATAGAGAACTGCACTGCGTTGAAATACAGAGTTTAA

mRNA sequence

ATGGAAAAGACACTATGTTGGGAAAATGCACCAGGCGCAATTCCTGACTTTTCTTGGGATTTGAGTTCTACTCTTTCACTACCGCTTTTGGTTGCTGCAGAGGCTAGGAATAATCAATTGGTCGATGTACCTGTAGATCCGATCAAGCCTCCATACCCAAGATGGTATGATGCAAATGTTCGCTGTGCCTATCACGCAGGAGCCATAGGGCATTCAATAGAGAACTGCACTGCGTTGAAATACAGAGTTTAA

Coding sequence (CDS)

ATGGAAAAGACACTATGTTGGGAAAATGCACCAGGCGCAATTCCTGACTTTTCTTGGGATTTGAGTTCTACTCTTTCACTACCGCTTTTGGTTGCTGCAGAGGCTAGGAATAATCAATTGGTCGATGTACCTGTAGATCCGATCAAGCCTCCATACCCAAGATGGTATGATGCAAATGTTCGCTGTGCCTATCACGCAGGAGCCATAGGGCATTCAATAGAGAACTGCACTGCGTTGAAATACAGAGTTTAA

Protein sequence

MEKTLCWENAPGAIPDFSWDLSSTLSLPLLVAAEARNNQLVDVPVDPIKPPYPRWYDANVRCAYHAGAIGHSIENCTALKYRV
Homology
[Close]
BLAST of Moc05g15810 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 36  RNNQLVDVPVDPIKPPYPRWYDANVRCAYHAGAIGHSIENCTALKYRV 84
           +NNQL  VPVDPI+PPYPRWYD N RC YHAGAIGHS ENCTALKYRV
Sbjct: 364 QNNQLAPVPVDPIQPPYPRWYDTNARCDYHAGAIGHSTENCTALKYRV 411

[Close]
BLAST of Moc05g15810 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 5.1e-16
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 36  RNNQLVDVPVDPIKPPYPRWYDANVRCAYHAGAIGHSIENCTALKYRV 84
           +NNQL  VPVDPI+PPYP WYDAN RC YHAGAIGHS ENCTALKYRV
Sbjct: 466 QNNQLAPVPVDPIQPPYPGWYDANXRCDYHAGAIGHSTENCTALKYRV 513

[Close]
BLAST of Moc05g15810 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 36  RNNQLVDVPVDPIKPPYPRWYDANVRCAYHAGAIGHSIENCTALKYRV 84
           +NNQL  VPVDPI+PPYPRWYDAN RC YHAGAI HS ENCT LKYRV
Sbjct: 404 QNNQLAPVPVDPIQPPYPRWYDANARCDYHAGAIXHSTENCTXLKYRV 451

[Close]
BLAST of Moc05g15810 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 9.6e-15
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 0 

Query: 21  LSSTLSLPLLVA----AEARNNQLVDVPVDPIKPPYPRWYDANVRCAYHAGAIGHSIENC 80
           ++ST   PL       ++ +  +L  VPVDPI+PPYPRW DAN RC YH GAIGHSIENC
Sbjct: 280 ITSTADEPLAAKKTSHSKKKEGELAHVPVDPIQPPYPRWCDANARCDYHTGAIGHSIENC 339

Query: 81  TALKYRV 84
           TALKYRV
Sbjct: 340 TALKYRV 346

[Close]
BLAST of Moc05g15810 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 0 

Query: 21  LSSTLSLPLLVA----AEARNNQLVDVPVDPIKPPYPRWYDANVRCAYHAGAIGHSIENC 80
           ++ST   PL       ++ +  +L  VPVDPI+P YPRWYDAN RC YHAGAIGHS ENC
Sbjct: 338 ITSTADEPLAAKKASHSKKKEGELTPVPVDPIQPLYPRWYDANARCDYHAGAIGHSTENC 397

Query: 81  TALKYRV 84
           TALKYRV
Sbjct: 398 TALKYRV 404

[Close]
BLAST of Moc05g15810 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.4e-17
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 36  RNNQLVDVPVDPIKPPYPRWYDANVRCAYHAGAIGHSIENCTALKYRV 84
           +NNQL  VPVDPI+PPYPRWYD N RC YHAGAIGHS ENCTALKYRV
Sbjct: 364 QNNQLAPVPVDPIQPPYPRWYDTNARCDYHAGAIGHSTENCTALKYRV 411

[Close]
BLAST of Moc05g15810 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.5e-16
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 36  RNNQLVDVPVDPIKPPYPRWYDANVRCAYHAGAIGHSIENCTALKYRV 84
           +NNQL  VPVDPI+PPYP WYDAN RC YHAGAIGHS ENCTALKYRV
Sbjct: 466 QNNQLAPVPVDPIQPPYPGWYDANXRCDYHAGAIGHSTENCTALKYRV 513

[Close]
BLAST of Moc05g15810 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.2e-16
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 36  RNNQLVDVPVDPIKPPYPRWYDANVRCAYHAGAIGHSIENCTALKYRV 84
           +NNQL  VPVDPI+PPYPRWYDAN RC YHAGAI HS ENCT LKYRV
Sbjct: 404 QNNQLAPVPVDPIQPPYPRWYDANARCDYHAGAIXHSTENCTXLKYRV 451

[Close]
BLAST of Moc05g15810 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.6e-15
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 0 

Query: 21  LSSTLSLPLLVA----AEARNNQLVDVPVDPIKPPYPRWYDANVRCAYHAGAIGHSIENC 80
           ++ST   PL       ++ +  +L  VPVDPI+PPYPRW DAN RC YH GAIGHSIENC
Sbjct: 280 ITSTADEPLAAKKTSHSKKKEGELAHVPVDPIQPPYPRWCDANARCDYHTGAIGHSIENC 339

Query: 81  TALKYRV 84
           TALKYRV
Sbjct: 340 TALKYRV 346

[Close]
BLAST of Moc05g15810 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.9e-15
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 0 

Query: 21  LSSTLSLPLLVA----AEARNNQLVDVPVDPIKPPYPRWYDANVRCAYHAGAIGHSIENC 80
           ++ST   PL       ++ +  +L  VPVDPI+P YPRWYDAN RC YHAGAIGHS ENC
Sbjct: 338 ITSTADEPLAAKKASHSKKKEGELTPVPVDPIQPLYPRWYDANARCDYHAGAIGHSTENC 397

Query: 81  TALKYRV 84
           TALKYRV
Sbjct: 398 TALKYRV 404

The following BLAST results are available for this feature:
BLAST of Moc05g15810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158986.11.7e-1683.33LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia][more]
XP_022155098.15.1e-1683.33LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch... [more]
XP_022147189.11.5e-1581.25LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia][more]
XP_022143495.19.6e-1561.19LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia][more]
XP_022157796.11.6e-1461.19LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia][more]
BLAST of Moc05g15810 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc05g15810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E2J78.4e-1783.33Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1[more]
A0A6J1DM292.5e-1683.33LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia... [more]
A0A6J1D0997.2e-1681.25Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1[more]
A0A6J1CNY74.6e-1561.19Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1[more]
A0A6J1DZ907.9e-1561.19Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1[more]
BLAST of Moc05g15810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g15810.1Moc05g15810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0030430 host cell cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity