Moc05g15070 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g15070
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon opus
Locationchr5: 11322463 .. 11323170 (-)
RNA-Seq ExpressionMoc05g15070
SyntenyMoc05g15070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCAGCGAATGAAGCATTATTATCAAAGCAGTATGTTGAAAGCCTTTGATATTTTGGAAAGAATCTCACGCAATAATCGCCAATGGTCAAAATCAAGGGCCGCTTCAGCAAATACATCTAAGGGATTAGTAGAGGATGATGTTGTGGTAGATTTAAATTCAAAAATTTCAAAGCTAGCAAACATTGTGATGATGAGCATATCGCACTCAAATACTAGAGCATCCAAGGCTAAGGTAAACAGTAGTGTGCAGAATGTTTCATACCCTTATTGCGAAGGAGAGCATCATTTTGAGGATTGTCTGGGCAACCCAGCTTCAATGTTTTATTTAGGTAATCAACAGCCAAACAGGAATAATGTTTATGGAAAAATTTATAATCCGAATTTTAGCTGGGGTGGAAATCTATCAGCGCAGAATGTTGGAGCAACTGGAACCAGTAATGCTCCAGCATAACATCAGAAGGTGCAATACCCACTTGAATTTTTTGGGCAGAATCAACAGGCCGCTCCGAAACATCCTAAGGCTATGACCCTGAAGGATATGTTTAAAGCATATATGGTAAATAACGAGGCTTATATGGCGAAGAATGATACTACTGTTCAAAGTCTAGTTGCATCCTTGGGAAATATAGAGGTGCAATTAGGTCAGCTAGCCACAGAATTGAAAAGTCCACGAGGAGTGCTTCCTAGTGACACTGAACAATAA

mRNA sequence

ATGCTTCAGCGAATGAAGCATTATTATCAAAGCAGTATGTTGAAAGCCTTTGATATTTTGGAAAGAATCTCACGCAATAATCGCCAATGGTCAAAATCAAGGGCCGCTTCAGCAAATACATCTAAGGGATTAGTAGAGGATGATGTTGTGGTAGATTTAAATTCAAAAATTTCAAAGCTAGCAAACATTGTGATGATGAGCATATCGCACTCAAATACTAGAGCATCCAAGGCTAAGAATCAACAGGCCGCTCCGAAACATCCTAAGGCTATGACCCTGAAGGATATGTTTAAAGCATATATGGTAAATAACGAGGCTTATATGGCGAAGAATGATACTACTGTTCAAAGTCTAGTTGCATCCTTGGGAAATATAGAGGTGCAATTAGGTCAGCTAGCCACAGAATTGAAAAGTCCACGAGGAGTGCTTCCTAGTGACACTGAACAATAA

Coding sequence (CDS)

ATGCTTCAGCGAATGAAGCATTATTATCAAAGCAGTATGTTGAAAGCCTTTGATATTTTGGAAAGAATCTCACGCAATAATCGCCAATGGTCAAAATCAAGGGCCGCTTCAGCAAATACATCTAAGGGATTAGTAGAGGATGATGTTGTGGTAGATTTAAATTCAAAAATTTCAAAGCTAGCAAACATTGTGATGATGAGCATATCGCACTCAAATACTAGAGCATCCAAGGCTAAGAATCAACAGGCCGCTCCGAAACATCCTAAGGCTATGACCCTGAAGGATATGTTTAAAGCATATATGGTAAATAACGAGGCTTATATGGCGAAGAATGATACTACTGTTCAAAGTCTAGTTGCATCCTTGGGAAATATAGAGGTGCAATTAGGTCAGCTAGCCACAGAATTGAAAAGTCCACGAGGAGTGCTTCCTAGTGACACTGAACAATAA

Protein sequence

MLQRMKHYYQSSMLKAFDILERISRNNRQWSKSRAASANTSKGLVEDDVVVDLNSKISKLANIVMMSISHSNTRASKAKNQQAAPKHPKAMTLKDMFKAYMVNNEAYMAKNDTTVQSLVASLGNIEVQLGQLATELKSPRGVLPSDTEQ
Homology
[Close]
BLAST of Moc05g15070 vs. NCBI nr
Match: XP_022158768.1 (uncharacterized protein LOC111025234 [Momordica charantia])

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-29
Identity = 87/164 (53.05%), Postives = 99/164 (60.37%), Query Frame = 0 

Query: 5   MKHYYQSSMLKAFDILERISRNNRQWSKSRAASANTSKGLVEDDVVVDLNSKISKLANIV 64
           +KHY      +AFDILE ISRN  Q SKSRA S+ TSKGL  DDVV +LNSKISKLA+I 
Sbjct: 122 LKHY-----AEAFDILEEISRNKHQRSKSRAVSSTTSKGLANDDVVANLNSKISKLADIG 181

Query: 65  MMSISHSNTRASKAK----------------------------------------NQQAA 124
           M SISHS+  ASKAK                                        NQQAA
Sbjct: 182 MKSISHSDAGASKAKVNSMQNVSCPYCKREHHFEDCPGNPPSVFYLGNPQPNMGNNQQAA 241

Query: 125 PKHPKAMTLKDMFKAYMVNNEAYMAKNDTTVQSLVASLGNIEVQ 129
           PKHP+ MTL+DMFKAYM  NE YM KNDTT+QSL ASLGNI+++
Sbjct: 242 PKHPETMTLEDMFKAYMAKNETYMMKNDTTIQSLAASLGNIDMK 280

[Close]
BLAST of Moc05g15070 vs. NCBI nr
Match: XP_022155867.1 (uncharacterized protein LOC111022881 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 6.5e-14
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0 

Query: 15  KAFDILERISRNNRQWSKSRAASANTSKGLVEDDVVVDLNSKISKLANIVMMSISHSNTR 74
           +AFDILERI  N  QWSKSRAAS  TSKGLVE+DVV DLNSKISKLA+IVM SISHS+ R
Sbjct: 115 EAFDILERILCNKHQWSKSRAASVMTSKGLVENDVVADLNSKISKLADIVMESISHSDAR 174

Query: 75  AS 77
           AS
Sbjct: 175 AS 176

[Close]
BLAST of Moc05g15070 vs. NCBI nr
Match: XP_022158598.1 (uncharacterized protein LOC111025053 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 6.1e-12
Identity = 64/167 (38.32%), Postives = 84/167 (50.30%), Query Frame = 0 

Query: 15  KAFDILERISRNNRQWSKSRAASANTSKGLVEDDVVVDLNSKISKLANIVMMSISHSNTR 74
           KA +ILERIS +N  WS  RA    +SK LVE +    LNSKI  L ++   + S+SNT 
Sbjct: 134 KALNILERISSSNHSWSDHRAIEGKSSKELVESESYTTLNSKIEILTDLNNRNTSYSNTY 193

Query: 75  ASKAKNQ----------------QAAPKHPKAMTLKDMF--KAYMVNN------------ 134
             + +N                   AP   + ++    F  +  MV +            
Sbjct: 194 NPRLRNHPNFGWSGNQGGHNTGISNAPTFQQKVSYPPGFAYQGQMVEHNQSKGSITSLEN 253

Query: 135 --EAYMAKNDTTVQSLVASLGNIEVQLGQLATELKS-PRGVLPSDTE 149
             + YMA ND TVQS  ASL N+E+Q+GQLA +LKS P G LPSDTE
Sbjct: 254 IMKQYMANNDATVQSQAASLRNLELQVGQLAMDLKSRPVGALPSDTE 300

[Close]
BLAST of Moc05g15070 vs. NCBI nr
Match: XP_022159060.1 (uncharacterized protein LOC111025500 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-11
Identity = 63/179 (35.20%), Postives = 82/179 (45.81%), Query Frame = 0 

Query: 15  KAFDILERISRNNRQWSKSRAASANTSKGLVEDDVVVDLNSKISKLANIVMMSISHSNTR 74
           +AF+ILERIS NN+ WS  RA     SKG  E +    LN KI  L ++VM S++H +T 
Sbjct: 82  EAFNILERISSNNQSWSDPRAIHGKGSKGFNESESFTALNLKIENLTDLVMRSMTHQSTV 141

Query: 75  ASKAKNQQAAPKHPKAMTLKDMFKAYMVNN------------------------------ 134
            + A   +A   H + ++       Y  NN                              
Sbjct: 142 GASA--GKANVSHIQGISCSFCVGEYRYNNCPGNPESVHYLGNAQNNENNPYSIRTTWAG 201

Query: 135 ----------------EAYMAKNDTTVQSLVASLGNIEVQLGQLATELKS-PRGVLPSD 147
                             YM  NDTTVQS   SL N+E+Q+GQLAT+LKS P+GVLPSD
Sbjct: 202 GTILTLVRVEIRKETMLKYMENNDTTVQSQAVSLRNLEMQVGQLATDLKSKPKGVLPSD 258

[Close]
BLAST of Moc05g15070 vs. NCBI nr
Match: XP_022151321.1 (uncharacterized protein LOC111019284 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-11
Identity = 56/132 (42.42%), Postives = 70/132 (53.03%), Query Frame = 0 

Query: 15  KAFDILERISRNNRQWSKSRAASANTSKGLVEDDVVVDLNSKISKLANIVMMSISHSNTR 74
           +AFD  + IS N  QWSKSR ASA TSK L +DDVV DLNSKIS L +I+M +I+  +  
Sbjct: 29  EAFDTPKIISSNKHQWSKSRVASAKTSKRLADDDVVADLNSKISMLVDIMMKNITQHDAE 88

Query: 75  ASKAKNQQAAPKHPKAMTLKDMFKAYMVNNEAYMAKNDTTVQSLVASLGNIEVQLGQLAT 134
            SKA +Q                                      ASL N+EV++G+LAT
Sbjct: 89  VSKATSQ-------------------------------------AASLRNMEVEIGKLAT 123

Query: 135 ELKS-PRGVLPS 146
           ELKS PR +L S
Sbjct: 149 ELKSGPRTILTS 123

[Close]
BLAST of Moc05g15070 vs. ExPASy TrEMBL
Match: A0A6J1DX14 (uncharacterized protein LOC111025234 OS=Momordica charantia OX=3673 GN=LOC111025234 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 9.2e-30
Identity = 87/164 (53.05%), Postives = 99/164 (60.37%), Query Frame = 0 

Query: 5   MKHYYQSSMLKAFDILERISRNNRQWSKSRAASANTSKGLVEDDVVVDLNSKISKLANIV 64
           +KHY      +AFDILE ISRN  Q SKSRA S+ TSKGL  DDVV +LNSKISKLA+I 
Sbjct: 122 LKHY-----AEAFDILEEISRNKHQRSKSRAVSSTTSKGLANDDVVANLNSKISKLADIG 181

Query: 65  MMSISHSNTRASKAK----------------------------------------NQQAA 124
           M SISHS+  ASKAK                                        NQQAA
Sbjct: 182 MKSISHSDAGASKAKVNSMQNVSCPYCKREHHFEDCPGNPPSVFYLGNPQPNMGNNQQAA 241

Query: 125 PKHPKAMTLKDMFKAYMVNNEAYMAKNDTTVQSLVASLGNIEVQ 129
           PKHP+ MTL+DMFKAYM  NE YM KNDTT+QSL ASLGNI+++
Sbjct: 242 PKHPETMTLEDMFKAYMAKNETYMMKNDTTIQSLAASLGNIDMK 280

[Close]
BLAST of Moc05g15070 vs. ExPASy TrEMBL
Match: A0A6J1DQJ0 (uncharacterized protein LOC111022881 OS=Momordica charantia OX=3673 GN=LOC111022881 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.2e-14
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0 

Query: 15  KAFDILERISRNNRQWSKSRAASANTSKGLVEDDVVVDLNSKISKLANIVMMSISHSNTR 74
           +AFDILERI  N  QWSKSRAAS  TSKGLVE+DVV DLNSKISKLA+IVM SISHS+ R
Sbjct: 115 EAFDILERILCNKHQWSKSRAASVMTSKGLVENDVVADLNSKISKLADIVMESISHSDAR 174

Query: 75  AS 77
           AS
Sbjct: 175 AS 176

[Close]
BLAST of Moc05g15070 vs. ExPASy TrEMBL
Match: A0A6J1DWK1 (uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025053 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-12
Identity = 64/167 (38.32%), Postives = 84/167 (50.30%), Query Frame = 0 

Query: 15  KAFDILERISRNNRQWSKSRAASANTSKGLVEDDVVVDLNSKISKLANIVMMSISHSNTR 74
           KA +ILERIS +N  WS  RA    +SK LVE +    LNSKI  L ++   + S+SNT 
Sbjct: 134 KALNILERISSSNHSWSDHRAIEGKSSKELVESESYTTLNSKIEILTDLNNRNTSYSNTY 193

Query: 75  ASKAKNQ----------------QAAPKHPKAMTLKDMF--KAYMVNN------------ 134
             + +N                   AP   + ++    F  +  MV +            
Sbjct: 194 NPRLRNHPNFGWSGNQGGHNTGISNAPTFQQKVSYPPGFAYQGQMVEHNQSKGSITSLEN 253

Query: 135 --EAYMAKNDTTVQSLVASLGNIEVQLGQLATELKS-PRGVLPSDTE 149
             + YMA ND TVQS  ASL N+E+Q+GQLA +LKS P G LPSDTE
Sbjct: 254 IMKQYMANNDATVQSQAASLRNLELQVGQLAMDLKSRPVGALPSDTE 300

[Close]
BLAST of Moc05g15070 vs. ExPASy TrEMBL
Match: A0A6J1DXK5 (uncharacterized protein LOC111025500 OS=Momordica charantia OX=3673 GN=LOC111025500 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-12
Identity = 63/179 (35.20%), Postives = 82/179 (45.81%), Query Frame = 0 

Query: 15  KAFDILERISRNNRQWSKSRAASANTSKGLVEDDVVVDLNSKISKLANIVMMSISHSNTR 74
           +AF+ILERIS NN+ WS  RA     SKG  E +    LN KI  L ++VM S++H +T 
Sbjct: 82  EAFNILERISSNNQSWSDPRAIHGKGSKGFNESESFTALNLKIENLTDLVMRSMTHQSTV 141

Query: 75  ASKAKNQQAAPKHPKAMTLKDMFKAYMVNN------------------------------ 134
            + A   +A   H + ++       Y  NN                              
Sbjct: 142 GASA--GKANVSHIQGISCSFCVGEYRYNNCPGNPESVHYLGNAQNNENNPYSIRTTWAG 201

Query: 135 ----------------EAYMAKNDTTVQSLVASLGNIEVQLGQLATELKS-PRGVLPSD 147
                             YM  NDTTVQS   SL N+E+Q+GQLAT+LKS P+GVLPSD
Sbjct: 202 GTILTLVRVEIRKETMLKYMENNDTTVQSQAVSLRNLEMQVGQLATDLKSKPKGVLPSD 258

[Close]
BLAST of Moc05g15070 vs. ExPASy TrEMBL
Match: A0A6J1DEA2 (uncharacterized protein LOC111019284 OS=Momordica charantia OX=3673 GN=LOC111019284 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 56/132 (42.42%), Postives = 70/132 (53.03%), Query Frame = 0 

Query: 15  KAFDILERISRNNRQWSKSRAASANTSKGLVEDDVVVDLNSKISKLANIVMMSISHSNTR 74
           +AFD  + IS N  QWSKSR ASA TSK L +DDVV DLNSKIS L +I+M +I+  +  
Sbjct: 29  EAFDTPKIISSNKHQWSKSRVASAKTSKRLADDDVVADLNSKISMLVDIMMKNITQHDAE 88

Query: 75  ASKAKNQQAAPKHPKAMTLKDMFKAYMVNNEAYMAKNDTTVQSLVASLGNIEVQLGQLAT 134
            SKA +Q                                      ASL N+EV++G+LAT
Sbjct: 89  VSKATSQ-------------------------------------AASLRNMEVEIGKLAT 123

Query: 135 ELKS-PRGVLPS 146
           ELKS PR +L S
Sbjct: 149 ELKSGPRTILTS 123

The following BLAST results are available for this feature:
BLAST of Moc05g15070 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158768.11.9e-2953.05uncharacterized protein LOC111025234 [Momordica charantia][more]
XP_022155867.16.5e-1479.03uncharacterized protein LOC111022881 [Momordica charantia][more]
XP_022158598.16.1e-1238.32uncharacterized protein LOC111025053 [Momordica charantia][more]
XP_022159060.11.0e-1135.20uncharacterized protein LOC111025500 [Momordica charantia][more]
XP_022151321.14.0e-1142.42uncharacterized protein LOC111019284 [Momordica charantia][more]
BLAST of Moc05g15070 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc05g15070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DX149.2e-3053.05uncharacterized protein LOC111025234 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DQJ03.2e-1479.03uncharacterized protein LOC111022881 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DWK13.0e-1238.32uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DXK55.0e-1235.20uncharacterized protein LOC111025500 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DEA21.9e-1142.42uncharacterized protein LOC111019284 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
BLAST of Moc05g15070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g15070.1Moc05g15070.1mRNA