Moc05g13910 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g13910
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	DNA-directed RNA polymerase subunit
Location	chr5: 10669121 .. 10674205 (-)
RNA-Seq Expression	Moc05g13910
Synteny	Moc05g13910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTATGCGAAGGTCTACACAACTACACTTTACGAACGTAGCTCGAACCCGGTCCCCGGCTCGACCTGAACACAAGTGTGGACCTGCACAAGAGGGTAAACACTCCGACGCTCAAGTTAATATTGGTCGGATTCTGTATTTAGTTCGAGGTGAGATTTGATACCTGAGCGTGAAATGAGACCCTCTATTTATAGGTGGGGGATCCGACTGCACTCACGACCGGCAGTTATATGTTCTTTCCCATATTGGACCTGTCGGGTTCCGAGTAGGTCGGTCCTCCCTCAGATCGGACTTCAGCATGTACACAGCCTTTTCTCTATGGGCGAACCCGACCTCTTCGGCAGGTTTGAGGTGGACCTTGGATATTTAATCCTTATAACACCAGTAACCGTCCTCCAATAAGCGTCCTCCACGTGTCTCAGGTAGTTTTACCCCCAAACAGAGTGAGTTTAGGATATGTGTGGGAGTGATTAATTATTTTTGTCATTTTCTAAAATTGCTTGTCTATTATTGTAAAATATTGGGGTGTGTTTTGGGTGATTTTGACATGGCTTAAATTACTTTTGTCATTGCCAAAATCACTCTCCTTTAAAATGTTTCTGGGATAAAATTGATTTTGGGAAATTGTGAAATCATTTTAAAGTGATTTTTTTTTAGCATTAGTTGGTAGGTGATATTTGCTAGCCTCTTAAATTAAGCCATTGTTTAAAGGAGCTGTAAGATGCTTTTTAGGCTGACCAAACTAGGTCGACCATGTTGGGATTGGTGGAGTCAAAACAAAATGGAAGAGAGAGAGAAAAGAATTGAAGACGAATGAAAATACTGCAGGAGACACATAGGTCGAGAAGATAGTGTTGAGACACCGTAGGGAGCGTCACAACACTGTGACAATAAGAACGTAAAGGCAGAGGCGCACATGTTTTGTTATTTAACGCTACATGGTCGTAGCATTGAGACGCGCTGATAAGGATTTTAAATACCTTCATTTTCTTTAGTTTTTTTTTTATGTTGATGTGTTGTTGCACAAACATAGAGTGACGACTGAGAGTGTTGGTGCACGTATCAAAGGGCAGTGTATTGGTAAAGTAGTTTAGATGTGAGATCTCAGGGTTCTAGTAGCCCATAGTTGGGTGAACCAGTATAAATTGCAGTTTGAGAGTATTGTATTATTCCAATATTATAGTAGAATTCGTTGTTGCAGAAGATTGAACGTAGCCCGTAGTTGGGTAAACCAGTATAAATTGTTTGTGTTGTTTACTGTGCTTTCCCTATATTATCTTATTATTGTGATTTGCTTACTTTTCACCGACGAACCGAGGAAGAGGAAAAGTTCTTGGTAAGCAATTTTCCAACAGACATATTTGGGCCGACTAATTCAGGCTGACCAACGTGGACTTGACCACCTCGAGCCAATCAACTCAAGTTGAAAAATCCAGGCCAATAAGCTCAAGTCCCGACCAAGCTAGGCAAACCAACCTCAACAAGCACGAGCCTAACACCCCAAGACTATCTCGAGGCAACCAGCTCGATCATGATTCTCGAGACGACCATCTCAAGCACTAGTCTTGGCTGACCAACTTAGGTCGACGACCTAAGGCCAACCATACTAGGTCAACCACCCCTGGTCAACCAACTTAGGCCAACCACCACGAGTTGACCAACATGGGTTGATCATATCGAGTCGACAAGTCCAAGCAACCTCCCAAGTGCGACCATCCTAAGCCCAACCACCCTTGGTCGACTAGCCCGAGCCAACCTACTCAGGTCGACCAGCTCAAGAAAACCACGTCGAGAACGCAGTCCCGAGCTCGATCATCCCAAGCTCGTCCAACCCCTGACGACCAACTTTGCTTGACCATCACTCTCTCGCTCACTTCACTCCCTCTTTCCCCTTCTCGCTTAGTCACACTCTCGCTTAGTTGCATTCTAAATCTCATGTGTCGTTGCAATAACACCGATAGGAAAAGGTGGTTTATGGCGAGATAGGGAAGATCAACGATAGACACGATTTCATGTATTTGTAAGTTCTAATTTCATTCGGCCCAAATTTTTCGGTCCATACAAAAAAACCCTTCTTTTTTCCCGCGCTGCTAAATCCCCTCCCCATCCTTCTCCCAGATTCACACGCACGCGTTTCTCGCTCACTTCTCACATCAGTCGCCTCATTACTTGCCGATCTCTCCGACTCTCTGTAAGTTCCTATGTCCTTCTTTTACAGGGATTTCGCTATCCTCCCCATGCCTCGCTTAAGACACTGGATTTGAAGAAATATTACACTTATTTGGGAGGTGTCTTTAGTTTTTGCATTCAATTTCTTTTTCTAGTTCAATAATTTCTGTTGAGTGAGCGGATTATATATTCTGTGTTTGATATGCATCAGATTACTGATTGGTAGAGGATGGATTTGTGTTAGGGCATAGCTAATGGAGTTCTGCCCAACTTGCGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGCAAATCTTCCAGATTCTTCTGCCCGACTTGTCCTTATGTGTGCCATTTGGAGAACAGGGTATGTGACACTCAAATTTCTGTAACTTTCTTATTTACGCCTCTTAGTTTCTTGTGTAATGATCTGAGGACTGCATTCTCGTGGTTCTACTATTCAGGTAAAGATCAAAAGAAAGCAGCATTTGTTAAAGAAGGAATTAGAACCCATAATCTCTGATGATGATATGAAAACAGCAGCTCAAACCGAAGGTATACATCTTTGCCTTTAATTACGTTTTTTTGTTTTTTCTATTAAATTTTTGCCGGCTGGAGTTGGAGAAAAGATTTAATCCGATAACTATTGCAAGGACAGTAATTTGATTCACCTATATATTATGAAATGCAAGTGTTTATATATAGCCGTAAATGGTAGGCCAAACTAGTGTGGCGGTTCTATTTCCTTTAGTTATAAAGGGTCTAGCTGAAAATAATCTCAATGACTGAAGTGATAAGGTCCCAAGTTTCTTCCCTAGGAACTAAATCTTTGAAGATTCCTCGTTCCAATCAAACCTTCCGAAAAATGGCAACAATACCATTAATCCACAAGATATTTTTCTTCTTAGACCTCACAGAAGTTTAGAAATGAAGTCCTTTAAGCTATCGGGTACAACTAACCTCAAAACACATCAAAGCCATATCCTAGACTGACATTCAAGAAAATGTGGAGAACAATTCTTCTATCTTTCTACGAAGGAACACCAATTGAGCTAGAGGAACAATAAAGAATTTGTCCTTGGTATAACACCATCTTTTGATAAGCAAAGGAGACCGTATTCTATGTAACTAGATGACTACCACCTTATACTCACCCTCCCAAAAGAAGTTTCAGTCTTTCAGATGTAACTCTAAATTGTTGCAGCAAATTTACTGGAAACTTTAACATTAAAAGATAGTCTAGGAGGAAATTAGTAAGGGTCGACTGAGTGAACTTAAGACGCCCTCTCTTAGCAATGGGGGCTGCATTCCTCTTCATCAACTTAGGAAAATTAGTCTCTGCCCCTGCTGTTTTGATAAAGTTATAGAAGTCCAAAAGTAAATTAAAAAAGCTTCATAATATTTAGGAGATTGGAGATTTAAAAACTTCTATACGTAATATTAAATCAATATCATCTGCAAATTGTAAAAGAGAGATGAGTCTGAACTTTCTTAAGAAAGAAACCTTCAATGGTCCCATCTTCATACCCAAGGAAAGAAATCTGTTGAAACTATCAGCCACCAAGACAGAGAAAATGGGAGATAAGGTCATCTTCTCTTAGGTGATCTGTAGAAGGCAAGATGTCACTCTAGAATCAAGTCAAGAAAATTCCAGTCCCCACTTATTTTAAGCATTCTCTAAATCAAGCTTAAAGATGAGTCCTCTCATGCCTTTTTTCTTCTACTCATCCATTTTCTTTGCAATCGAAAAAGGATTCATCCTTTCGTGTATTGTAACCTTGAATGGATGATTGATCTCTTCAATCTTTTGAAAGACGTTTGAAAAAGTACCTTTTTGTCTTTTGTGAATGGTATTAGACTTACATGGTGCTTCCAATGCATCTTTATTGTGGTGAGAGGAAGATGTATGAACTAAATCTGTAAAACTGGAAATATAGATCATAGAATGAATGACTTGACCCTAATGAGTTATGCTCATCACAGACATAGATGTAGGGTATTCTAGCCTTGAAAATTTATATTTTTATTTATTTATTTAAGAAACGTAAATTCAGAGGTTTCAACTGATAGCCAATGGTAATTCTGTGACATTCACGTTCATTGTCCGTGAATACACATTTTCTAAGTTTTGCATCATATGATCATATGGAAAATGGACGGGCAAGAGTAGAAACGATTGTGTAACTAAAGCTGCGTTTGATAACCATTTCATTTTATAAAATTAAGCTTACAATCACTACTTCCACCTATGTATTCCTTTGTCTTGTTATCAACTTTTTAAAAACATTTTCAAAATCTAAGCCGCATTTTGAAAACTAAAAGAATTAGTTTCCAAAACTTGTGTTTGTTTTAAAAACTTGGCTAAGAATTCAAATGTGTTCTAAAGAAAGGTAAAAAAAACATACTAAAAAATAGTGATAAATTAAGCATAAATTTTAAAAATATAAAACTAATAATGAAATCGTTATCAACGGAGCCTAAATAATTAAATTTCAGGACTTATAGAGATGGTTCACAGGTTGTAATAATTTTTATCTGGAAAAAGAAAAAAACTTTGCAGCCGTGAACTCTCTCTATAAGGAGGCACTGGTTTTGATTTTCTTTTCGTACTGACGAATAATATGATGGTGATTTATTTTTGGAAGTTGTAGAACATTAGCACAGCCTTATTATCCTGCATAACTTATTATTATTTTTTTCCTGGATATATGTAAAGCATTGGGCATAACTTATTATTTCTTTATCCTTTTTTTTTTCCCTAATGTTTTCCCAAATTCTGTAGCAACATGTCCAAATTGTGCATTTGGTAAGGCTGCTTTTATACAATTACAGCTGAGATCGGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAGAACTGCAGACATAATTGGCGTGAGGATTAA

mRNA sequence

ATGTTTATGCGAAGGTCTACACAACTACACTTTACGAACGTAGCTCGAACCCGGTCCCCGGCTCGACCTGAACACAAGTGTGGACCTGCACAAGAGGGTGGGGGATCCGACTGCACTCACGACCGGCAGTTATATGTTCTTTCCCATATTGGACCTGTCGGGTTCCGAGTAGGTCGGTCCTCCCTCAGATCGGACTTCAGCATGTACACAGCCTTTTCTCTATGGGCGAACCCGACCTCTTCGGCAGATTCACACGCACGCGTTTCTCGCTCACTTCTCACATCAGTCGCCTCATTACTTGCCGATCTCTCCGACTCTCTATTCTTCTGCCCGACTTGTCCTTATGTGTGCCATTTGGAGAACAGGGTAAAGATCAAAAGAAAGCAGCATTTGTTAAAGAAGGAATTAGAACCCATAATCTCTGATGATGATATGAAAACAGCAGCTCAAACCGAAGCAACATGTCCAAATTGTGCATTTGGTAAGGCTGCTTTTATACAATTACAGCTGAGATCGGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAGAACTGCAGACATAATTGGCGTGAGGATTAA

Coding sequence (CDS)

ATGTTTATGCGAAGGTCTACACAACTACACTTTACGAACGTAGCTCGAACCCGGTCCCCGGCTCGACCTGAACACAAGTGTGGACCTGCACAAGAGGGTGGGGGATCCGACTGCACTCACGACCGGCAGTTATATGTTCTTTCCCATATTGGACCTGTCGGGTTCCGAGTAGGTCGGTCCTCCCTCAGATCGGACTTCAGCATGTACACAGCCTTTTCTCTATGGGCGAACCCGACCTCTTCGGCAGATTCACACGCACGCGTTTCTCGCTCACTTCTCACATCAGTCGCCTCATTACTTGCCGATCTCTCCGACTCTCTATTCTTCTGCCCGACTTGTCCTTATGTGTGCCATTTGGAGAACAGGGTAAAGATCAAAAGAAAGCAGCATTTGTTAAAGAAGGAATTAGAACCCATAATCTCTGATGATGATATGAAAACAGCAGCTCAAACCGAAGCAACATGTCCAAATTGTGCATTTGGTAAGGCTGCTTTTATACAATTACAGCTGAGATCGGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAGAACTGCAGACATAATTGGCGTGAGGATTAA

Protein sequence

MFMRRSTQLHFTNVARTRSPARPEHKCGPAQEGGGSDCTHDRQLYVLSHIGPVGFRVGRSSLRSDFSMYTAFSLWANPTSSADSHARVSRSLLTSVASLLADLSDSLFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQLQLRSADEPATTFYKCMNENCRHNWRED

Homology

[Close]

BLAST of Moc05g13910 vs. NCBI nr
Match: XP_022152387.1 (DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022152388.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022152389.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022152390.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022152392.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia])

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-45
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 106 SLFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF 165
           S FFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF
Sbjct: 22  SRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF 81

Query: 166 IQLQLRSADEPATTFYKCMNENCRHNWRED 196
           IQLQLRSADEPATTFYKCMNENCRHNWRED
Sbjct: 82  IQLQLRSADEPATTFYKCMNENCRHNWRED 111

[Close]

BLAST of Moc05g13910 vs. NCBI nr
Match: XP_038903069.1 (DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-42
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 106 SLFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF 165
           S FFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNCAFGKAAF
Sbjct: 22  SRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAF 81

Query: 166 IQLQLRSADEPATTFYKCMNENCRHNWRED 196
           IQ+QLRSADEPATTFYKCMNENCRHNWRED
Sbjct: 82  IQIQLRSADEPATTFYKCMNENCRHNWRED 111

[Close]

BLAST of Moc05g13910 vs. NCBI nr
Match: XP_022152562.1 (DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia])

HSP 1 Score: 182.2 bits (461), Expect = 4.3e-42
Identity = 83/90 (92.22%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 106 SLFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF 165
           S FFCPTCPYVCHLENRVKIKRKQHL+KKELEPIISD+DMK AAQTEATCPNCAFGKAAF
Sbjct: 22  SRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAF 81

Query: 166 IQLQLRSADEPATTFYKCMNENCRHNWRED 196
           IQ+QLRSADEPATTFYKCMNE+CR NWRED
Sbjct: 82  IQVQLRSADEPATTFYKCMNEDCRINWRED 111

[Close]

BLAST of Moc05g13910 vs. NCBI nr
Match: XP_004141147.1 (DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >XP_008465338.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >KGN59770.1 hypothetical protein Csa_002120 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-41
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 106 SLFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF 165
           S FFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNCAFGKAAF
Sbjct: 22  SRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAF 81

Query: 166 IQLQLRSADEPATTFYKCMNENCRHNWRED 196
           IQ+QLRSADEPATTFYKCMNENCR NWRED
Sbjct: 82  IQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]

BLAST of Moc05g13910 vs. NCBI nr
Match: KAG6597716.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.6 bits (444), Expect = 4.1e-40
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 106 SLFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF 165
           S FFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNC FGKAAF
Sbjct: 59  SRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAF 118

Query: 166 IQLQLRSADEPATTFYKCMNENCRHNWRED 196
           IQ+QLRSADEPA+TFYKCMNE+CR NWRED
Sbjct: 119 IQIQLRSADEPASTFYKCMNEDCRQNWRED 148

[Close]

BLAST of Moc05g13910 vs. ExPASy Swiss-Prot
Match: Q9Y2Y1 (DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens OX=9606 GN=POLR3K PE=1 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 4.4e-13
Identity = 38/87 (43.68%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 108 FFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQ 167
           F C TCPYV ++  +V   RK   LK+  + +      +    T  +CP C   +A F+Q
Sbjct: 23  FSCNTCPYVHNITRKV-TNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQ 82

Query: 168 LQLRSADEPATTFYKCMNENCRHNWRE 195
           LQ RSADEP TTFYKC N  C H WR+
Sbjct: 83  LQTRSADEPMTTFYKCCNAQCGHRWRD 108

[Close]

BLAST of Moc05g13910 vs. ExPASy Swiss-Prot
Match: Q9CQZ7 (DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus OX=10090 GN=Polr3k PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.5e-13
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 108 FFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQ 167
           F C TCPYV ++  +V   RK   LK+  + +      +    T   CP C   +A F+Q
Sbjct: 23  FACNTCPYVHNITRKV-TNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQ 82

Query: 168 LQLRSADEPATTFYKCMNENCRHNWRE 195
           LQ RSADEP TTFYKC N  C H WR+
Sbjct: 83  LQTRSADEPMTTFYKCCNAQCGHRWRD 108

[Close]

BLAST of Moc05g13910 vs. ExPASy Swiss-Prot
Match: Q2M2S7 (DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus OX=9913 GN=POLR3K PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-12
Identity = 38/87 (43.68%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 108 FFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAFIQ 167
           F C TCPYV H   R    RK   LK+  + +      +    T   CP C   +A F+Q
Sbjct: 23  FACNTCPYV-HNVTRKVTNRKYPKLKEVDDELGGAAAWENVDSTAEPCPKCEHPRAYFMQ 82

Query: 168 LQLRSADEPATTFYKCMNENCRHNWRE 195
           LQ R ADEP TTFYKC N  C H WR+
Sbjct: 83  LQTRYADEPMTTFYKCCNAQCGHRWRD 108

[Close]

BLAST of Moc05g13910 vs. ExPASy Swiss-Prot
Match: Q04307 (DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC11 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.4e-11
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 110 CPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPN---CAFGKAAFI 169
           C +CPY   +E  ++I  ++ L +KE++ ++         QT+  CPN   C    A F 
Sbjct: 26  CRSCPYEFPIEG-IEIYDRKKLPRKEVDDVLG-GGWDNVDQTKTQCPNYDTCGGESAYFF 85

Query: 170 QLQLRSADEPATTFYKCMNENCRHNWRED 196
           QLQ+RSADEP TTFYKC+  NC H W+E+
Sbjct: 86  QLQIRSADEPMTTFYKCV--NCGHRWKEN 110

[Close]

BLAST of Moc05g13910 vs. ExPASy Swiss-Prot
Match: O13896 (DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc11 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-10
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 108 FFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDD-MKTAAQTEATCPN--CAFGKAA 167
           F C TCPY  H      +  +    +KE++ ++  ++  ++  QTE TC N  C   +A 
Sbjct: 23  FDCRTCPY--HFPISTFLYSRHEFAQKEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAY 82

Query: 168 FIQLQLRSADEPATTFYKCMNENCRHNWRED 196
           F QLQ+RSADEP +TFY+C    C+  WRE+
Sbjct: 83  FFQLQIRSADEPMSTFYRC--TKCKFQWREN 109

[Close]

BLAST of Moc05g13910 vs. ExPASy TrEMBL
Match: A0A6J1DDT5 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111020128 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 7.0e-46
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 106 SLFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF 165
           S FFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF
Sbjct: 22  SRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF 81

Query: 166 IQLQLRSADEPATTFYKCMNENCRHNWRED 196
           IQLQLRSADEPATTFYKCMNENCRHNWRED
Sbjct: 82  IQLQLRSADEPATTFYKCMNENCRHNWRED 111

[Close]

BLAST of Moc05g13910 vs. ExPASy TrEMBL
Match: A0A6J1DGL3 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111020260 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.1e-42
Identity = 83/90 (92.22%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 106 SLFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF 165
           S FFCPTCPYVCHLENRVKIKRKQHL+KKELEPIISD+DMK AAQTEATCPNCAFGKAAF
Sbjct: 22  SRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAF 81

Query: 166 IQLQLRSADEPATTFYKCMNENCRHNWRED 196
           IQ+QLRSADEPATTFYKCMNE+CR NWRED
Sbjct: 82  IQVQLRSADEPATTFYKCMNEDCRINWRED 111

[Close]

BLAST of Moc05g13910 vs. ExPASy TrEMBL
Match: A0A1S3CQ50 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 6.1e-42
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 106 SLFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF 165
           S FFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNCAFGKAAF
Sbjct: 22  SRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAF 81

Query: 166 IQLQLRSADEPATTFYKCMNENCRHNWRED 196
           IQ+QLRSADEPATTFYKCMNENCR NWRED
Sbjct: 82  IQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]

BLAST of Moc05g13910 vs. ExPASy TrEMBL
Match: A0A0A0LCM4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 6.1e-42
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 106 SLFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF 165
           S FFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNCAFGKAAF
Sbjct: 22  SRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAF 81

Query: 166 IQLQLRSADEPATTFYKCMNENCRHNWRED 196
           IQ+QLRSADEPATTFYKCMNENCR NWRED
Sbjct: 82  IQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]

BLAST of Moc05g13910 vs. ExPASy TrEMBL
Match: A0A6J1IB59 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.0e-40
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 106 SLFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF 165
           S FFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNC FGKAAF
Sbjct: 22  SRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAF 81

Query: 166 IQLQLRSADEPATTFYKCMNENCRHNWRED 196
           IQ+QLRSADEPA+TFYKCMNE+CR NWRED
Sbjct: 82  IQIQLRSADEPASTFYKCMNEDCRQNWRED 111

[Close]

BLAST of Moc05g13910 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 112.1 bits (279), Expect = 5.1e-25
Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 106 SLFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAAF 165
           S FFC TCPYV ++E RV+IK+KQ L+KK +EP+++ DD+ TAA+TEA CP C   KA F
Sbjct: 19  SRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDDIPTAAETEAPCPRCGHDKAYF 78

Query: 166 IQLQLRSADEPATTFYKCMNENCRHNWRED 196
             +Q+RSADEP + FY+C+   C   WRE+
Sbjct: 79  KSMQIRSADEPESRFYRCL--KCEFTWREE 106

[Close]

BLAST of Moc05g13910 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-23
Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 105 DSLFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDDMKTAAQTEATCPNCAFGKAA 164
           +S FFC TCPYV +++ +V+IK+KQ L+KK +E +++ DD+ TAA+TEA CP C   KA 
Sbjct: 18  NSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDDIPTAAETEAPCPRCGHDKAY 77

Query: 165 FIQLQLRSADEPATTFYKCMNENCRHNWRED 196
           F  +Q+RSADEP + FY+C+   C   WRE+
Sbjct: 78  FKSMQIRSADEPESRFYRCL--KCEFTWREE 106

[Close]

BLAST of Moc05g13910 vs. TAIR 10
Match: AT2G38560.1 (transcript elongation factor IIS )

HSP 1 Score: 42.0 bits (97), Expect = 6.5e-04
Identity = 18/46 (39.13%), Postives = 27/46 (58.70%), Query Frame = 0


Query: 148 AAQTEATCPNCAFGKAAFIQLQLRSADEPATTFYKCMNENCRHNWR 194
           A+  +  C  C   K  + Q+Q RSADEP TT+  C+  NC ++W+
Sbjct: 333 ASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCV--NCDNHWK 376

The following BLAST results are available for this feature:

BLAST of Moc05g13910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152387.1	1.4e-45	98.89	DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022...	[more]
XP_038903069.1	1.5e-42	93.33	DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]	[more]
XP_022152562.1	4.3e-42	92.22	DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia]	[more]
XP_004141147.1	1.3e-41	92.22	DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 ...	[more]
KAG6597716.1	4.1e-40	88.89	DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s...	[more]

BLAST of Moc05g13910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y2Y1	4.4e-13	43.68	DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens OX=9606 GN=POLR3K ...	[more]
Q9CQZ7	7.5e-13	43.68	DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus OX=10090 GN=Polr3k...	[more]
Q2M2S7	3.7e-12	43.68	DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus OX=9913 GN=POLR3K PE...	[more]
Q04307	5.4e-11	41.57	DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strai...	[more]
O13896	3.5e-10	38.46	DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of Moc05g13910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDT5	7.0e-46	98.89	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110201...	[more]
A0A6J1DGL3	2.1e-42	92.22	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110202...	[more]
A0A1S3CQ50	6.1e-42	92.22	DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3...	[more]
A0A0A0LCM4	6.1e-42	92.22	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 P...	[more]
A0A6J1IB59	2.0e-40	88.89	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 ...	[more]

BLAST of Moc05g13910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G07950.1	5.1e-25	54.44	DNA-directed RNA polymerase, subunit M, archaeal	[more]
AT1G01210.1	1.3e-23	50.55	DNA-directed RNA polymerase, subunit M, archaeal	[more]
AT2G38560.1	6.5e-04	39.13	transcript elongation factor IIS	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 153..194 e-value: 6.7E-15 score: 65.5
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 153..193 e-value: 9.9E-17 score: 60.5
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS00466	ZF_TFIIS_1	coord: 155..192
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 151..193 score: 13.629342
None	No IPR available	GENE3D	2.20.25.10		coord: 140..195 e-value: 3.7E-19 score: 69.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..36
None	No IPR available	PANTHER	PTHR11239:SF12	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10	coord: 105..194
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 138..195
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PANTHER	PTHR11239	DNA-DIRECTED RNA POLYMERASE	coord: 105..194
IPR034014	Pol III subunit C11, C-terminal zinc ribbon	CDD	cd10509	Zn-ribbon_RPC11	coord: 148..194 e-value: 3.82675E-23 score: 85.3298

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g13910.1	Moc05g13910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006386	termination of RNA polymerase III transcription
biological_process	GO:0042779	tRNA 3'-trailer cleavage
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding