Moc05g13620 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g13620
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Locationchr5: 10508646 .. 10508900 (+)
RNA-Seq ExpressionMoc05g13620
SyntenyMoc05g13620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGGGCATTGGGCACATATTTGTCGTACATTGAAACACTTAGTGGATCTTTATCAAGCTTCCTTGAAAGAAAAAGGAAATAATGTGGAAGCAAATCTTGCCTACCACGATGGTGATATCTTTGACGCTGCCAATATTACAAGTTTGGATGTGACTGACTTTCTTGAATCTCCTGGAGAACAAATTGGCACATTGAGCACAATGGATGGAATAGCAAGTGCTTCTTTTGATTTTGGGAATATTCAGAACTAA

mRNA sequence

ATGACTGGGCATTGGGCACATATTTGTCGTACATTGAAACACTTAGTGGATCTTTATCAAGCTTCCTTGAAAGAAAAAGGAAATAATGTGGAAGCAAATCTTGCCTACCACGATGGTGATATCTTTGACGCTGCCAATATTACAAGTTTGGATGTGACTGACTTTCTTGAATCTCCTGGAGAACAAATTGGCACATTGAGCACAATGGATGGAATAGCAAGTGCTTCTTTTGATTTTGGGAATATTCAGAACTAA

Coding sequence (CDS)

ATGACTGGGCATTGGGCACATATTTGTCGTACATTGAAACACTTAGTGGATCTTTATCAAGCTTCCTTGAAAGAAAAAGGAAATAATGTGGAAGCAAATCTTGCCTACCACGATGGTGATATCTTTGACGCTGCCAATATTACAAGTTTGGATGTGACTGACTTTCTTGAATCTCCTGGAGAACAAATTGGCACATTGAGCACAATGGATGGAATAGCAAGTGCTTCTTTTGATTTTGGGAATATTCAGAACTAA

Protein sequence

MTGHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGDIFDAANITSLDVTDFLESPGEQIGTLSTMDGIASASFDFGNIQN
Homology
BLAST of Moc05g13620 vs. NCBI nr
Match: XP_022152405.1 (uncharacterized protein LOC111020141 [Momordica charantia])

HSP 1 Score: 175.3 bits (443), Expect = 2.3e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1   MTGHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGDIFDAANITSLDVTDFLESPG 60
           MTGHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGDIFDAANITSLDVTDFLESPG
Sbjct: 168 MTGHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGDIFDAANITSLDVTDFLESPG 227

Query: 61  EQIGTLSTMDGIASASFDFGNIQN 85
           EQIGTLSTMDGIASASFDFGNIQN
Sbjct: 228 EQIGTLSTMDGIASASFDFGNIQN 251

BLAST of Moc05g13620 vs. NCBI nr
Match: KAA0032304.1 (Gag [Cucumis melo var. makuwa] >TYJ99440.1 Gag [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-12
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1  MTGHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGDIFDAANITSLDVTDFLESPG 60
          M GH    CRT KHLV LYQASL+EKG NVE N AY D D+FD +N+T LDV DF ESP 
Sbjct: 1  MKGHRTRTCRTSKHLVGLYQASLEEKGKNVEVNFAYQD-DVFDPSNMTHLDVADFFESPE 60

Query: 61 EQ 63
          E+
Sbjct: 61 EK 61

BLAST of Moc05g13620 vs. NCBI nr
Match: XP_040935307.1 (uncharacterized protein LOC121208513 [Gossypium hirsutum])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 3   GHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGD-IFDAANITSLDVTDFLESP 60
           GHW+ +CRT KHLVDLYQ S+K+KG  VE NL Y DG+  FD  N T L+VTDFL +P
Sbjct: 207 GHWSRVCRTQKHLVDLYQQSIKQKGKKVETNLMYKDGEGDFDDGNATHLEVTDFLSTP 264

BLAST of Moc05g13620 vs. NCBI nr
Match: XP_021849187.1 (uncharacterized protein LOC110788860 [Spinacia oleracea])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 3   GHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGD-IFDAANITSLDVTDFLESP 60
           GHW+ +CRTLKHLVDLYQ+SLK+KG NVE NL + DG+  F++ + T L+V DF  SP
Sbjct: 280 GHWSRVCRTLKHLVDLYQSSLKKKGKNVETNLVFEDGEGDFESGDTTHLEVADFFTSP 337

BLAST of Moc05g13620 vs. NCBI nr
Match: TYH22588.1 (hypothetical protein ES288_A04G140900v1 [Gossypium darwinii])

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-11
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 3   GHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGDI-FDAANITSLDVTDFLESP 60
           GHW+ +CRT KHLVDLYQ S+K+KG  VE NL Y DG+  FD  N T L+V DFL +P
Sbjct: 73  GHWSRVCRTQKHLVDLYQHSIKQKGKKVETNLVYKDGECDFDDGNATHLEVADFLSTP 130

BLAST of Moc05g13620 vs. ExPASy TrEMBL
Match: A0A6J1DDU8 (uncharacterized protein LOC111020141 OS=Momordica charantia OX=3673 GN=LOC111020141 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1   MTGHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGDIFDAANITSLDVTDFLESPG 60
           MTGHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGDIFDAANITSLDVTDFLESPG
Sbjct: 168 MTGHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGDIFDAANITSLDVTDFLESPG 227

Query: 61  EQIGTLSTMDGIASASFDFGNIQN 85
           EQIGTLSTMDGIASASFDFGNIQN
Sbjct: 228 EQIGTLSTMDGIASASFDFGNIQN 251

BLAST of Moc05g13620 vs. ExPASy TrEMBL
Match: A0A5D3BHZ8 (Gag OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold316G00320 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.8e-13
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1  MTGHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGDIFDAANITSLDVTDFLESPG 60
          M GH    CRT KHLV LYQASL+EKG NVE N AY D D+FD +N+T LDV DF ESP 
Sbjct: 1  MKGHRTRTCRTSKHLVGLYQASLEEKGKNVEVNFAYQD-DVFDPSNMTHLDVADFFESPE 60

Query: 61 EQ 63
          E+
Sbjct: 61 EK 61

BLAST of Moc05g13620 vs. ExPASy TrEMBL
Match: A0A5D2GXY2 (CCHC-type domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_A04G140900v1 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 3   GHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGDI-FDAANITSLDVTDFLESP 60
           GHW+ +CRT KHLVDLYQ S+K+KG  VE NL Y DG+  FD  N T L+V DFL +P
Sbjct: 73  GHWSRVCRTQKHLVDLYQHSIKQKGKKVETNLVYKDGECDFDDGNATHLEVADFLSTP 130

BLAST of Moc05g13620 vs. ExPASy TrEMBL
Match: A0A1U8PVE2 (uncharacterized protein LOC107963038 OS=Gossypium hirsutum OX=3635 GN=LOC107963038 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.8e-11
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 3   GHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGD-IFDAANITSLDVTDFLESP 60
           GHW+ +CRT KHLVDLYQ S+K+KG  VE NL Y DG+  FD  N T L+V DFL +P
Sbjct: 211 GHWSRVCRTQKHLVDLYQQSIKQKGKKVETNLVYKDGEGDFDDGNATHLEVADFLSTP 268

BLAST of Moc05g13620 vs. ExPASy TrEMBL
Match: A0A1U8MM34 (uncharacterized protein LOC107939104 OS=Gossypium hirsutum OX=3635 GN=LOC107939104 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.8e-11
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 3   GHWAHICRTLKHLVDLYQASLKEKGNNVEANLAYHDGD-IFDAANITSLDVTDFLESP 60
           GHW+ +CRT KHLVDLYQ S+K+KG  VE NL Y DG+  FD  N T L+V DFL +P
Sbjct: 225 GHWSRVCRTQKHLVDLYQQSIKQKGKKVETNLVYKDGEGDFDDGNATHLEVADFLSTP 282

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022152405.12.3e-40100.00uncharacterized protein LOC111020141 [Momordica charantia][more]
KAA0032304.12.0e-1264.52Gag [Cucumis melo var. makuwa] >TYJ99440.1 Gag [Cucumis melo var. makuwa][more]
XP_040935307.11.3e-1162.07uncharacterized protein LOC121208513 [Gossypium hirsutum][more]
XP_021849187.11.3e-1160.34uncharacterized protein LOC110788860 [Spinacia oleracea][more]
TYH22588.12.9e-1160.34hypothetical protein ES288_A04G140900v1 [Gossypium darwinii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DDU81.1e-40100.00uncharacterized protein LOC111020141 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A5D3BHZ89.8e-1364.52Gag OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold316G00320 PE=4 SV=1[more]
A0A5D2GXY21.4e-1160.34CCHC-type domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_A04G... [more]
A0A1U8PVE21.8e-1160.34uncharacterized protein LOC107963038 OS=Gossypium hirsutum OX=3635 GN=LOC1079630... [more]
A0A1U8MM341.8e-1160.34uncharacterized protein LOC107939104 OS=Gossypium hirsutum OX=3635 GN=LOC1079391... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g13620.1Moc05g13620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding