Moc05g13600 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g13600
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr5: 10497447 .. 10498545 (+)
RNA-Seq ExpressionMoc05g13600
SyntenyMoc05g13600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGATCGGTTTGGTTCACTTGTAAGAGAGATGACGCAGTAAAATATCCAAGAAGGAGTCTTGGGGAGTGGAGTAGGTATTTCCAAATCACTATAAAATTCATGGTGTCATCTTTTACTCTACTCTTTAATTTATGTATTTAAATTTCATTTGATTTTTTGTTGTTCTTAAAATTATTTTTTAAAATCTACAAGTTCGTAAGCAACCCTATTCACCCTCTCCCCCATCTAGTGTTGCCATATCGATCATACATGGACTAATTGTGTTTTTTAACCTTTTATTAGCAGTATAAATAATAAAAATAATAGTTAAAAATTTAAAATAATTGGTTAAAAAATAATGTGTCTCATTAGTAGATGAGAGATAAAAGGATAAAAGTTGTAAAGTAATTATTAGAAAGTTACAAGGTGCACAAAAGAAAAAATTAGAATGAGATTGTAGGAGAGAAATGAGATTAGTGATCACAAAGTTTGAGATGGACCCTATCAATTATTCTATTCCTACACTTTAGTAAACACTATTAAATAATTCCTTGATTCTCATTTCGAAAACTGTATCTTTAATGCATAATTCTAACATGTAAGCTTTTTAAAATCTTATGGTTAATAAACTATTAAAGAGAAATACTATAAATTAAGTGGGTGGTAGCAGCTTTCATCAATATAGGTAGTTTTTCGTCTTCTCTTCTTTCTCTATTTTTCGCTACTTCTCTAGAGAGATTTAGGTTACAAAATTTTCTTGCTATTTTGTTAGACTTTGCGAGAAAAATAATTGTTCACACGAGATTTTCGAAAAAAAATATAAATAATGGAAAAAATATAATTTATATTGATTTTGGGGTTCGTACAATCTTTAATATTTACCATATGACTTTCTCTTGAATTATTAGATGATTGCCTTTGGGCTTGTTGATCTTGATCGACTTTATGGACTTGTTGATCTTGATTGGCCTTTTGAACTTATTGATCTTGATTGTCTTTCTGGACTTGTTGATCTTGATCGACCTTCTGGACTTATTGATCTTAATCGATCTTTTGGACTTCTTGATCTTAATCGACCTTCTAGACTTGTGGATCTTCAGAAAGTCTTCAGATAG

mRNA sequence

ATGGTCGATCGGTTTGGTTCACTTATGATTGCCTTTGGGCTTGTTGATCTTGATCGACTTTATGGACTTGTTGATCTTGATTGGCCTTTTGAACTTATTGATCTTGATTGTCTTTCTGGACTTGTTGATCTTGATCGACCTTCTGGACTTATTGATCTTAATCGATCTTTTGGACTTCTTGATCTTAATCGACCTTCTAGACTTGTGGATCTTCAGAAAGTCTTCAGATAG

Coding sequence (CDS)

ATGGTCGATCGGTTTGGTTCACTTATGATTGCCTTTGGGCTTGTTGATCTTGATCGACTTTATGGACTTGTTGATCTTGATTGGCCTTTTGAACTTATTGATCTTGATTGTCTTTCTGGACTTGTTGATCTTGATCGACCTTCTGGACTTATTGATCTTAATCGATCTTTTGGACTTCTTGATCTTAATCGACCTTCTAGACTTGTGGATCTTCAGAAAGTCTTCAGATAG

Protein sequence

MVDRFGSLMIAFGLVDLDRLYGLVDLDWPFELIDLDCLSGLVDLDRPSGLIDLNRSFGLLDLNRPSRLVDLQKVFR
Homology
[Close]
BLAST of Moc05g13600 vs. NCBI nr
Match: RUS31355.1 (hypothetical protein BC938DRAFT_477989 [Jimgerdemannia flammicorona])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 8  LMIAFGLVDLDRLYGLVDLDWPFELIDLDCLSGLVDLDRPSGLIDLNRSFGLLDLNRPSR 67
          +M+ FGL+DL+  +GL+DL     LIDL+  +G +DL+  +GLIDL  S GL+DL     
Sbjct: 16 VMLNFGLIDLEVDFGLIDLQVDVGLIDLEVDAGPIDLEVDTGLIDLEVSVGLIDLEVGVG 75

Query: 68 LVDLQ 73
          L+DL+
Sbjct: 76 LIDLE 80

[Close]
BLAST of Moc05g13600 vs. ExPASy TrEMBL
Match: A0A433QNJ9 (Uncharacterized protein OS=Jimgerdemannia flammicorona OX=994334 GN=BC938DRAFT_477989 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.2e-05
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 8  LMIAFGLVDLDRLYGLVDLDWPFELIDLDCLSGLVDLDRPSGLIDLNRSFGLLDLNRPSR 67
          +M+ FGL+DL+  +GL+DL     LIDL+  +G +DL+  +GLIDL  S GL+DL     
Sbjct: 16 VMLNFGLIDLEVDFGLIDLQVDVGLIDLEVDAGPIDLEVDTGLIDLEVSVGLIDLEVGVG 75

Query: 68 LVDLQ 73
          L+DL+
Sbjct: 76 LIDLE 80

The following BLAST results are available for this feature:
BLAST of Moc05g13600 vs. NCBI nr
Match NameE-valueIdentityDescription
RUS31355.11.1e-0446.15hypothetical protein BC938DRAFT_477989 [Jimgerdemannia flammicorona][more]
BLAST of Moc05g13600 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc05g13600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A433QNJ95.2e-0546.15Uncharacterized protein OS=Jimgerdemannia flammicorona OX=994334 GN=BC938DRAFT_4... [more]
BLAST of Moc05g13600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g13600.1Moc05g13600.1mRNA