Moc05g13510 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g13510
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr5: 10373753 .. 10385095 (+)
RNA-Seq Expression	Moc05g13510
Synteny	Moc05g13510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGCGGGTTGGAAAATTTCTGGATTTTTGGCACTTAGATAGCGTTTTTCTTCGTGATTCGATCATGTAAGGGCCCAGTGTTTTGGGCATTATGTTTCTGCTTAGTTTCTATAAGTCCGTGTCGCTCGAAAGTCGTTCGTGGCGTCGGATTGGGCGAAAAGTTTCAGAAAACAGCGAAGAAGACGAAGCAGACTGTGCAGACAGCACAGAGCGCCACGTCGCTGCACTGTAGCGTCGCGGTGCTGTGCAGCGCCATGGCGCCATGCCAGAGCGCCGCGGCGCTGCCCTTAGGCGCCGAGGCGCTATCTCGGGTGTTTTCGACGCGGTTCCGAGGCTCCAATTCGCGGTTCGAAGGCGGGTGTAGTCGGTTTTCTTATTTTTAATTATTTCGTTTTCTTAGGGTGCCAAAAACCGTTCCAACTTTGCTATTTAATTATTTTATGCATTATGAATGTATATTTTAATTAAAATCATATAGCATATTGTATGCCATATTGTTTTAAAATCCCACCATAGGTTACATGCATAATATGTATGTTTGATATATAATATGTATATATGGACATGCATCATATAGTTATAAATGTTATAATGTATGTATGCATGTTATATTTTCATAATTAATATAAGTGTTGTATTAATTAGATGAAAATAAAGTTGCATTGAGCATGACATTTTTTTTGAATAATATAATTGTTATATTAATGTATGCTTTCAATGCATGTTTATAGTTTTAATTTCTTAAAATTTTATAAGAGTTATAAAATGTGACAGATAGAAATTAAAATCTATAATAAAGAGTTGCATGCAAACATAAGGTCTAAGTTAATTAATTTTAAAGGGGTTTAAAATTAATTAGACCTTAGGTTATATCTTCTAATGTGATTAGGGGGTAGTCTTTTATTTTGTTTTAACTAGGTTTAAAATGAAATAACAAAAGACTAAATATAAAATGTTGTCTATAAGGGAACCCTGTCTAAGGAAGGTTCTGTCTAGGCTGAGGTATTTAAGCTGACCATAAGGGAACACCTCTACCTGGGATTCGACCTGGGGGTTGAATTAGTCAATATTTTATATACAAGCAATAATGTCGTTGGTTTATTAAAGTGTTTAACGAACTAAAACATTATTGTACAACTTCCGATATAATAGTTATATTGGGCCGACTAAAAATACACTTAGTTAATTTCACTTAGCCAGGATTTATCTAAGTAATATACCCTAGTCTTAGAATACTAAGTGGGAGCAAAAGAGAATATGTAATATACAACGTATATATTTGATATACAAAGTATATATAACATAATTTACTCTCTCTCTCACGTTCTCCTTTAAATTCACGCTGTGAGTTCCATGCTCGGCCTTGTGTCGCCCTAGGCGCGGCCTCCCTATGGAAGGTGTTTGCATGGTTCAATATCGAGGTGAATGGAGATAGTGTTCATAGTAAGTGGGAGAAGGACGTGTGACAACACATTCTGCAGTCTCCGCCATTGGTTTGCACCGTGAGGTTTCATACATGACCTGCGTGTCGTCCTGGAGCGACCATCCCTACGGAGGATTCATTGTATGGAAATCAAAATCAAGGCAAACTCCAGAAATGGATAGGAGTCTCTTAGGTTTTGCTCCAATATTTTCCTTTCCTACGACACGATTATTGGGGTGGACCTCTGAGGTCCGAAAATGTTGGGTCACACTTACGAGGAGTTGTTAAGTTAGTTAGCAATTTCCTGACCAAATAAATGATGACTAAAATTTATAGGAATAAGAGTTATTCTGGTGTAAAATTTAGTTGAGACTGTCTCAATTTAGTGAATGAGTACATGTCTGCCCTACGGTGGCTGTTGCTCTAAATCACTGAAGCGTCGTTGCAAAACAATTTTGTTAGGGTGCTTAATTACTTTTGCTAAATTTTGATTGGGTTTAAAAGGCTAATGCATGAAACTAATATAGATTTGTTTTTACTTTCAGCATGTCTACTTCCATTATTGCACTCTTACCCGCGCAAAGACTTAATGGCGAAAATTACAAACAGTGGAAGTCAAACCTAAACACTATTCTCGTGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCTTCTGCGCCTAACGCCACTGTGGTCGTGCGCAACGCCTATGACAGGTGGATCAAGGCTAATGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCCAAGAAGCACGAGGACACGGTCACCGCTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTGCACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTCATTTACAACTCCCGCATGAAGGAGGGCTCCTCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGGCTGAGTCGAACGGGGCCGTCATAGATGAGCAGAGTCAGGTCGATTTTATTCTGGAATCTCTTCCGAAGAGTTTCCTTCCATTCCGCAGCAATACGGTTATGAATAAGCTGAAGTACACTCTTACCACGCTCCTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAATGTAAGGGACAAGAAAGGGAGGCAAATGTTGCCACCTCAAAGAGGTTCAACAGAGGATCGTCCTCTGGAACCAGGTCTGCGCCCTCTTCTTCTGGAAGTAAGACTTTTAAGAAGAAGAAGGCTGATGGTAAGGGGTCTAAACATGACTCAGCTGCTGCTGCCCAGAAAGGCAAGGTCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATATGGACGAGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCCGAAAAGAAGAAAGCCAACGAAGGTAAATATGATTTACTTGTATTGGAAACATGTTTAGTGGAGAATTAGTGGAGAATGATGACTCCGCCTGGATTCAGGAGCCACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGCCGGAGAGATGACTCTCAAGGTCAGAACGGGAGAGGTCGTCTCAGCTGTGGCAGTAGGGGAGCTCAAGTTGTTTACAAACAAGAATATGTATATATTATTAGATAATGTGTACGTTGTTCCTAAAATTAAAAGGAACTTAATTTCAATTTCTTGTTTGTTAGAACATATGTATTCAATTTCTTTTCATATGAATGAAGCGTTCATTTCGAGAAAAGGTGTTATATTTTTTTTGCTTTGCTTGAAAACAACTTGTATGTGCTAAGACCAACCATAACTAAAGCAGTTTTAAATACCGAGTTGTTTAAAAATTCTAGAACTCAAAATAAAAGGCAAAAAGTTTCTCAAAAAGAAGATACCTATCTTTGGCACTTAAGATTAGGTCACATTAATCTCAATAGGATTGGGAGGTTGGTTAAGAATGGCATTCTAAGTAAATTAGACGACGATCCTTTACCACCATGTGAGTCTTGTCTTGAAGGCAAGATGACTAAAAGACCTTTTACTGGAGAATGTTATAGAGCCAAAGAGCCCTTAGAACTTATACATTCAGACCTTTGTGGTCCAATGAATGTTAGAGCTCAAGGAGGGTATGAATACTTCATCTCTTTTATCGATGATTATTAAAGGTATGGTTATTTATACCTAATGCAACATAAGTCTGAAGCCCGTAAAAAGTTCCAGGAGTACAAGACTGAAGTTGAAAATCAATTAGGTAAAACCATTAAAACACTTCGATCAGATCGGGGTGGAGAGTATATGGACTTGAGATTCCAGGACTATATGATAGAACATGGAATCACGTCCCAACTCTCAGCCCCTGGTACACCTCAACAAAACGGTGTATCAGAAAGGAGAAACAGAACCCTGTTGGACATGGTTCGATCAATGATGAGCTATGCTCAGTTGCCTAACTCGTTTTGGGGTTATGCAGTGGAGACTACAGTTTATATTTTGAACGTAGTTCCATCAAAGAGTGTTTCTGAAACACCCTTTGAGCTGTGGAAGGGTCGTAAACCTAGTTTACGTCACTTTCGCATTTGGGGATGCCCGGCACACGTGCTCATGACTAACCCGAAGAAACTGGAACCTCGTTCAAAAGTATGCCTATTCTTAGGTTACCCTAAAGAGACGAGAGGTGGTCTCTTCTTCGATCATAAAGAAAACAGAGTGTTTGTATCGACAAATGCTACTTTCTTAGAAGAAGACCATGTTCGAGATCATAAACCACGAAGTAAGGTAGTAATTAACGAGATTTCCGAAGAGGCTACAAACACGTCAACAAGAGTTGTTGATCAAACTGGCACTACAACAAGAGTTGTTGATGAAGCTAGCACATCGCGTCAGTCACATCCACCTCAAGTGTTGAGTGTGCCTCGACGTAGTGGGAGGATTGTGTCACAACCTGACCGCTACGTGGGTTTAACTAAAGCTCAAGTTGTCATACCTGATGATGGCGTCAAGGATCCATTGACCTATATGAAAGCAATGGAAGATACTGACAAGCACAAATGGGTCAAATCAATGGATCTGGAAATGGAGTCGATGTACTTCAATTCCGTTTGGGAACTTGTACATCAACCTGACGGGGTAAAACCCATAGGGTGCAAATGGATCTACAAGCAAAATTGAGACGCCGAAGGAAAGGTACAGACCTATAAGGCGAGACTTGTGGCAAAAGGCTAATTGAAGGGATGTGAATCCCGGAGCGGAAGCAGATTTTCGTTGCTGATTTTCGGGATACAAAATCAAATTTTACAGAAGAAAAATACAGGGGAAAAACAAACCTTTGAAGAACGATTCTTCAGTAAGTTCCCCTCGAACACCACCACCGGATCTTCCTCGCTATCCTCTTGGGTCTCGGAATCGTGCTTGTGGTAGTACCTTGATAGAAGAGAGGGAGAGTTTGAGAGAATTTTGAGAGCAATTCTGGGAGTTTTCCTGTTCTGTAACCTTCTGTTTTCCCATTCCCCAACTCTTGAAGAAGAAGGGTGACGTGGGGTAATTCCCCACGTCACAAAACCTCCCACTCCCCTGTAATTTTGCAGAGGAGTTTAATATTAATAATAATAATATTATTATTAATATTAATATTAATATATATATATAATAATAATTATTATAATATATATATATAATAATTAATATATATATATATAATTAATTAATCAAATTAATTAATATAATTAATTATTAATCCAATTAATAATTAATAAATATATATATACATAAATAATTAACACTTAATTATTTATTATAAAATTAGAATCATATTCTGAAACATTTCTCTCGTATAACCTATAGTTTTAATGTACATCTTATGCACATTATTTTTAACCTATAGTTTTAATATGAATCTCATTCATGTTAATTTAATTTGAATCTCATTCAAATAATATCTCTCATATAGTTTTAATTTACAATTAACTATATATATTATAATGTATCAATATACATATAATCCCTTAAGTAATTTGAACAATTCAAATTCTTCCAAAAAATTTGATCCTCGTTGTACCCGATATGAGCTAGCAAGGGGACCTAATGGACCTGCAGATCCGAAGCTCCAACGATGCAAGATTAATCGGTCAAACTCATTGACCGAGTTAATCTAGATTCGTTAACTACGGGTCACTCCACTAAAGACCCGCAGTTGCACTCTTCTCACTGCAGAATGTTTTCGTGTCCGTGGATATACGACCATTAATGACGAGTCAATCCTTCACGAGTGTTCGTAACTCAAGTTGGGTCAAATTACCGTTTTACCCCTCAGTTACATCTTACTCCTTAAACACCACTGCTCCTCTAATGAACAACCCGGTTATGGTCCAATCAATAACCGGAAGTCCCTCTCGGCCAATGAGAGGGTAGGGCCCCTTGTTCAAGTCTCGGAGTCAGCATTTAAGGGAACACTCACCTACTCCCCTAAAGTCGGGGAGGAGTGAATTCCATCTTATGGAGTTATGGACTCCTGCCCGTGAGGGCTCGTCCTTTGTTGGGTGTGTTGCCCTAAACTCGTAGTTTGTATTTTGTAAAAACAAATGTCTATTTAATAAAGTTTTATTCAATAAATTTGTTGTTGAATCATAGCTTTGCATTGTCCAAAATCCAATAAACTAAACATCCAAGGTTATTTATGATGTAATCGGGACAGTATATATACTGGATATATAGTTGATATACGGGGTATATATTTGATATACCCCTGATATATGAATGAATAATGTCCCGTGAATAACCTCAAGAGTCTATAGTATATGGATAAGGCTGGGTACCTTATCCTGGCAACACTATGGATATGGCCCACTCTGTAAAGGTTACAGACGACTCAATCCAGGTCGTTCGTGTAGAGACATGCGAGTGGGGGTATCCTATACAATGAGTTTGTATAAGACCGGACCACGAAATAGGCAATCTTTAGATGTAACACCGTTAACTAATAGGTTGCTATTTCTTAGGATGACCAGGCAACTCATTCTCAATCCTGACTGAGTTATGGACTCCTGCCCATGAGGGCTCGTTCTTTGATCTGTATGGGTGAGAGTCGCTCGAGTCGCCGACTCAACATTCCTACCATTTTGGGGACGAGACCGAGTGGGGAGCTGAGAACATAACTTCAAAAGATGGAATTCACTTCTCCCCGACTTTAGGGGAGTAGGTGAGTGTTCCCTTAAATGCTGACTTCGGGACTTGAACAAGGGGCCCTACCCTTTCATTGGCCGAGAGGGACTTCCGGTTATTGGTTGGACCATAACCGGGTTGTTCATTAGAGGAGCAGTGGTGTTTAAAGAGTAAGATGTAACCCAGGGGTAAAACGGTAATTTGACCCAACTTGAGTTACGAACACTCGTGAAGGATTGACTCGTCATTAATGGTCGTATATCTATGGACACGAAAACATTCTGCAGTGAGAAGAGTGCAACTGCGGGTCTTTAGTGGAATGACCCGTAGTTAACGAATCTAGATTAACTCGGTCAATGAGTTTGACCGATTAATCTTGCATCATTGGAGCTTCGGATCTGTAGGTCCATTAGGTCCCCTTACTAGCTCATTACGGGTAAAACGAGGATCAAATTTTTTGGAAGAATTTGAATTGTTCAAATTACTTAAGGGATTATATGTATATTGCTACATTATAATATATATAGTTAATTGTAAATTAAAACTATATATTATGGGAGATATTATTTGAATGAGATTCAAATTAAATTAATATGAATGAGATTCATATTAAAACTATAGGTTAAAAATAATGTGCATAAGATGTACATTAAAACTATAGGTTATACGAGAGAAATGTTTTAGAATATGATTCTAATTTTATAATAAATAATTAAGTGTTAATTATTTATGTATATATATATTTATTAATTATTAATTGGATTAATAATTAATTAGATTAATTAATTATATATATATATATTAATTATTATATATATATATATTAATATTAATATTAATAATAATATTATTATTATTAATATTAAACTCCCCTGCAAAATTGCAGGGGAGTGGGAGGTTTTGTGACGTGGGGAGTTACCCCACGTCACCCTTTTTCTTCTTCTTCAAGAGTTGGGGAATGGGAAAACAGAAGGTTACTGAACAGGAAAACTCCCAGAATTGCTCTCAAAATTCTCTCAAACTCTCCCTCTCTTCTATCAAGGTGCTACCACAAGCACGATCCCGAGACCCAAGAGGATAGCGAGGAAGATCCGGTGGTGGTGTTCGAGGGGAACTTACTGAAGAATCGTTCTTCAAAGGTTTGTTTTTCCCCTGTATTTTTCTTCTGTAAAATTTGATTTTGTATCCCAAAAATCAGCAACGAAAATCCGCTTTCGCTTCGGGATTCACATCCCTTCAAGGCTACACACAAAGGGAAGGTGTGGGCTATGAAGAAACCTTCTCCCATGTAGCTATTCTTAAGTCTATTAGAATACTTCTGTCCATTAGCACATATTATGACTATGAGATATGACAGATGAACGTCAAAACTGCTTTTCTAAATTGCAATCTTGAAGAAAGTATTTATATGTCTCAACCCGAAGGGTTCATAGAACAAGGTCAAGAGCAAAAGGTTTGCAAGCTTAAACGGTCCATATATAGACTCAAACAAGCATCTCGATCTTGGAACATACGGTTCGATACTGCGATCAAATCTTATGGTTTTGACCAAAACGTTGATCAGCCTTGTGTATACAAGAAGATCGTCAACAACATCGTAGCCTTCTTAGTGTTGTACGTGGATGATATCCTACTCATTAGGGATGATGTAGGATACCTCACTGACATAAAGAAGTGGCTAGCGACTGAGTTCCAAATGAAGGATTTGGGAGAAGCTCAGTATGTTCTTGGCATCCAAATTCTAAGGGATCGCAAGAACAGAACGTTAACTCTGTCTCAAACAACTTATATCGACAAGATGTTTGCTCGATATTCGATGCAGAATTCCAAGAAAGGTTTGTTACCCTTCAGGCATGGAATTCATCTGTCTAAGGAGCAGTGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGTATACCCTATGCTTCCGCAGTGGGCAGCCTGATGTACGCTATGCTGTGCACTAGGCCTGACATTTGCTATGCGGTAGGGATAGTCAGTAGGTACCAATCCAACCTAGGATATGATCACTGGACTGCTGTTAAGGGAATCCTCAAGTATCTTAGGAGAACGAGGGACTACAAGCTCGTGTATGGCGCTAAGGATTTGATCCTTACAGGATACACTGACTCTGACTTCCAAACGGACAAGGATTCAAGGAAATCCACGTCGAGGCCAGTATTCACTCTTAACGGAGGAGCGGTAGTTTGGCGAAGCATCAAACAAGGATGTATTGCAGACTCCACGATGGAGGCAGAATATGTTGCAGCTTGTGAAGCAGCAAAAGAGGCGGTTTGGCTTAGAAAGTTCTTGACAGATTTGGACGTCGTTCCAAACATGAACTTGCCCATCACACTTTATTGTGATAACAGTGGTGCTGTGGCAAATTCTAAAGAACCTCGAAGCCATAAGAGAGGCAAACACATCGAAAGGAAGTACCACCTTATATGGGAGATAGTGCAGCGAGGAGATGTGATTGTCACGAAGATCGCTACAGAGCACAATATTGCTGATCCTTTTACAAAGGCACTCACGGCTAAAGTGTTTGAGGGCCATCTAGAAAGTCTAGGTTTACGAGCTTTATACAGTTAGTCTAGGGCAAGTGGGAGAAATGTAATTGGGTATAGTGTATGCCCTAGTTTATTGTATTTTCCCTTTGCTTTATGATAATGTACACCCCACTCGAGTTTAGTTCAAGTGGGAGTTTGTTGGGTGTGTTGCTCTAAACTCGTAGTTTGTATTTTGTAAAAAAAAATGTCTATTTAATAAAGTTTTATTCAATAAATTTGTTGTTGAATCATAGCTTTGCATTGTCCAAAATCCAATAAACTAAACATCCAAGGTTATTTATGATGTAATCGGGACAGTATATATACTGGATATATAGTTGATATACGGGGTATATATTTGATGTACCCCTGATATATGAATGGATAATGTCCCGTGAATAACCTCAAGGCTCTATAGTATATGGATAAGGCTGGGTACTTTATCCTGGCAACCTTATGGATACGGCCCACTCTATAAAGGTTACAGACGACTCGATCCAGGTCGTTCGTGTAGAGACATGCGAGTGGGGGTATCCTATACAATGAGTTTGTATAAGACCGGACCACGAAATAGGCAATCTTTAGATGTAACACCGTTAACTAATAGGTTGCTATTTCTTAGGATGACCAGGCAACTCATTCTCAATCCTGAGTGAGTTATGGACTCCTGCCTGTGAGGGCTCGTCCTTTGATCTGTATGGGTGAGAGTGGCCGGAGTCGCCGACTCAACATTCCTACCATTTTGGAGACGATACCGAGTGGGGAGCTGAGAACATAACTTCACAAGATGGAATTCAGTCCTCTCCGACTTTAGGGGAGTAAATGAGTGTTCTCCTAAATGCTGACTCCGGGACTTGAACAAGAAGCCCCACCCTCTCATTGGCCGAGAGGGACTTCCGGTTATTGGTTGGACCATAACCGGGTTGTTCATTAGAGGAGCAGTGGTGTTTAAGGAGTAAGATGTAACTCAGGGGTAAAACGGTAATTTGACCTAACTTGAGTTACGAACACTCGTGAAGGATTGACTCGTCATTTATGGTCGTATATCCGTGGACACGAAAATGTGCTGCAGTGAGAAGAGTGCAACTGCGGGTCTTTAGTGGAATGACCCGTAGTTAACGAATCTTGATTAACTCGGTCAATGAGTTTGACCGATTAATCTCGCATCGTTGGAGCTTCTGATTTGTAGGTTCATTAGGTCCCTTTGCTAGCTCATAACGGGTACAACGAGGATCAAGGTTTTGGAAGAATTTGAAATGTTCAAATTACTTAAGGGATTATATGTATATTGATACATTATAATATATATAGTTAATTATAAATTAAAACTATATATTATGAGAGAAATTATTTGAATGAGATTCAAATAAAATTAATAGGAATAAGATTCATGTTAAAACTATAGGTTAAAAATAATGTGCATAAGATGTACATTAGAACTATAGGTTATACGAGAGAAATGTTATAGAATATGATTCTATTTTTATGATAAATAATTAAGTGTTAATTATTTATTTGATATATATATATATATTAATTATTAATTGGATTAATAATTAATAATTATTTATTAATTAATATGATTAATTAATAAATTAATTTTATATTATAAATATATAAATAAATATATATATATATATTATTAATATTATTAATATTAATAATATTAAACTCCCCACAAAATTGCAGGGGAGTGGGAGGTTAGTGTGACGTGGGGAGTTACCCACGTCACTGTTTTGTTTTCTTTGCAGTTCTGCAAAAATATAGAACACAGAACATAGCAAGGACTTCTTCCAGTTTTCTCTCAATCAAGCTCTCCCTTAACTCTCTCTGACATTCCAAACAAGACGCTCCCACAAGCACGGTTCTCGAAACCAAAGAGGATAGCAAGGAAGATATAGTGGTGGTCTTCGAGGGAAACTCGTTGAAGAAACGTTCTTCAAAGGTAAAGTTTCCTCTGTATTTTTCTTCTGTAAAATTTCGTTTTGTATCCCGAAAATCAGCAACAAAAATTCGTTTCCGCTCCGGGATTCACATCCCATCATGATGAAATCTTCGGCTTGCGATTTTTTCAGCTTGCGGCTTGTGAAGTCTTCGGCTTGTAGCTTGTGAAGAGTTCCTTTGCTTGAAGTGCAGCTTGTGAGATCTTCAAGTCTTGAGAAGAATTCTTCAATCGGTTGCTTGGCGAAGTGA

mRNA sequence

ATGGGTTTGCGGGTTGGAAAATTTCTGGATTTTTGGCACTTAGATAGCGTTTTTCTTCTCGTTCGTGGCGTCGGATTGGGCGAAAAGTTTCAGAAAACAGCGAAGAAGACGAAGCAGACTGTGCAGACAGCACAGAGCGCCACGTCGCTGCACTGTAGCGTCGCGGTGCTGTGCAGCGCCATGGCGCCATGCCAGAGCGCCGCGGCGCTGCCCTTAGGCGCCGAGGCGCTATCTCGGGTGTTTTCGACGCGGTTCCGAGGCTCCAATTCGCGCATGTCTACTTCCATTATTGCACTCTTACCCGCGCAAAGACTTAATGGCGAAAATTACAAACAGTGGAAGTCAAACCTAAACACTATTCTCGTGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCTTCTGCGCCTAACGCCACTGTGGTCGTGCGCAACGCCTATGACAGGTGGATCAAGGCTAATGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCCAAGAAGCACGAGGACACGGTCACCGCTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTGCACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTCATTTACAACTCCCGCATGAAGGAGGGCTCCTCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGGCTGAGTCGAACGGGGCCGTCATAGATGAGCAGAGTCAGGTCGATTTTATTCTGGAATCTCTTCCGAAGAGTTTCCTTCCATTCCGCAGCAATACGGTTATGAATAAGCTGAAGTACACTCTTACCACGCTCCTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAATGTAAGGGACAAGAAAGGGAGGCAAATGTTGCCACCTCAAAGAGGTTCAACAGAGGATCGTCCTCTGGAACCAGGTCTGCGCCCTCTTCTTCTGGAAGTAAGACTTTTAAGAAGAAGAAGGCTGATGGTAAGGGGTCTAAACATGACTCAGCTGCTGCTGCCCAGAAAGGCAAGGTCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATATGGACGAGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCCGAAAAGAAGAAAGCCAACGAAGGAGCCACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGCCGGAGAGATGACTCTCAAGGTAGTAATTAACGAGATTTCCGAAGAGGCTACAAACACGTCAACAAGAGTTGTTGATCAAACTGGCACTACAACAAGAGTTGTTGATGAAGCTAGCACATCGCGTCAGTCACATCCACCTCAAGTGTTGAGTGTGCCTCGACGTAGTGGGAGGATTGTGTCACAACCTGACCGCTACGTGGGTTTAACTAAAGCTCAAGTTGTCATACCTGATGATGGCGTCAAGGATCCATTGACCTATATGAAAGCAATGGAAGATACTGACAAGCACAAATGGGTCAAATCAATGGATCTGGAAATGGAGTCGATGGGAGTGGGAGGTTTTGTGACGTGGGGAGTTACCCCACGTCACCCTTTTTCTTCTTCTTCAAGAGTTGGGGAATGGGAAAACAGAAGGTTACTGAACAGGAAAACTCCCAGAATTGCTCTCAAAATTCTCTCAAACTCTCCCTCTCTTCTATCAAGGTGCTACCACAAGCACGATCCCGAGACCCAAGAGGATAGCGAGGAAGATCCGGTGGTGGTGTTCGAGGGGAACTTACTGAAGAATCGTTCTTCAAAGCTTGTGAGATCTTCAAGTCTTGAGAAGAATTCTTCAATCGGTTGCTTGGCGAAGTGA

Coding sequence (CDS)

ATGGGTTTGCGGGTTGGAAAATTTCTGGATTTTTGGCACTTAGATAGCGTTTTTCTTCTCGTTCGTGGCGTCGGATTGGGCGAAAAGTTTCAGAAAACAGCGAAGAAGACGAAGCAGACTGTGCAGACAGCACAGAGCGCCACGTCGCTGCACTGTAGCGTCGCGGTGCTGTGCAGCGCCATGGCGCCATGCCAGAGCGCCGCGGCGCTGCCCTTAGGCGCCGAGGCGCTATCTCGGGTGTTTTCGACGCGGTTCCGAGGCTCCAATTCGCGCATGTCTACTTCCATTATTGCACTCTTACCCGCGCAAAGACTTAATGGCGAAAATTACAAACAGTGGAAGTCAAACCTAAACACTATTCTCGTGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCTTCTGCGCCTAACGCCACTGTGGTCGTGCGCAACGCCTATGACAGGTGGATCAAGGCTAATGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCCAAGAAGCACGAGGACACGGTCACCGCTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTGCACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTCATTTACAACTCCCGCATGAAGGAGGGCTCCTCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGGCTGAGTCGAACGGGGCCGTCATAGATGAGCAGAGTCAGGTCGATTTTATTCTGGAATCTCTTCCGAAGAGTTTCCTTCCATTCCGCAGCAATACGGTTATGAATAAGCTGAAGTACACTCTTACCACGCTCCTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAATGTAAGGGACAAGAAAGGGAGGCAAATGTTGCCACCTCAAAGAGGTTCAACAGAGGATCGTCCTCTGGAACCAGGTCTGCGCCCTCTTCTTCTGGAAGTAAGACTTTTAAGAAGAAGAAGGCTGATGGTAAGGGGTCTAAACATGACTCAGCTGCTGCTGCCCAGAAAGGCAAGGTCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATATGGACGAGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCCGAAAAGAAGAAAGCCAACGAAGGAGCCACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGCCGGAGAGATGACTCTCAAGGTAGTAATTAACGAGATTTCCGAAGAGGCTACAAACACGTCAACAAGAGTTGTTGATCAAACTGGCACTACAACAAGAGTTGTTGATGAAGCTAGCACATCGCGTCAGTCACATCCACCTCAAGTGTTGAGTGTGCCTCGACGTAGTGGGAGGATTGTGTCACAACCTGACCGCTACGTGGGTTTAACTAAAGCTCAAGTTGTCATACCTGATGATGGCGTCAAGGATCCATTGACCTATATGAAAGCAATGGAAGATACTGACAAGCACAAATGGGTCAAATCAATGGATCTGGAAATGGAGTCGATGGGAGTGGGAGGTTTTGTGACGTGGGGAGTTACCCCACGTCACCCTTTTTCTTCTTCTTCAAGAGTTGGGGAATGGGAAAACAGAAGGTTACTGAACAGGAAAACTCCCAGAATTGCTCTCAAAATTCTCTCAAACTCTCCCTCTCTTCTATCAAGGTGCTACCACAAGCACGATCCCGAGACCCAAGAGGATAGCGAGGAAGATCCGGTGGTGGTGTTCGAGGGGAACTTACTGAAGAATCGTTCTTCAAAGCTTGTGAGATCTTCAAGTCTTGAGAAGAATTCTTCAATCGGTTGCTTGGCGAAGTGA

Protein sequence

MGLRVGKFLDFWHLDSVFLLVRGVGLGEKFQKTAKKTKQTVQTAQSATSLHCSVAVLCSAMAPCQSAAALPLGAEALSRVFSTRFRGSNSRMSTSIIALLPAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQASAPNATVVVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFIYNSRMKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVDFILESLPKSFLPFRSNTVMNKLKYTLTTLLNELQTYQSLMKCKGQEREANVATSKRFNRGSSSGTRSAPSSSGSKTFKKKKADGKGSKHDSAAAAQKGKVKVAEKGKCFHCNMDEHWKRNCPKYLAEKKKANEGATNHVCSSFQGISSWRQLDAGEMTLKVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLSVPRRSGRIVSQPDRYVGLTKAQVVIPDDGVKDPLTYMKAMEDTDKHKWVKSMDLEMESMGVGGFVTWGVTPRHPFSSSSRVGEWENRRLLNRKTPRIALKILSNSPSLLSRCYHKHDPETQEDSEEDPVVVFEGNLLKNRSSKLVRSSSLEKNSSIGCLAK

Homology

[Close]

BLAST of Moc05g13510 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 417.2 bits (1071), Expect = 2.5e-112
Identity = 221/342 (64.62%), Postives = 265/342 (77.49%), Query Frame = 0


Query: 92  MSTSIIALLPAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQASAPNATVVVRNAYD 151
           M+++ + +L A +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ  A NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 152 RWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFIYNS 211
           RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 212 RMKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVDFILESLPKSFLPFRSNTVMNKLKY 271
           RM EG+SVREHVLN+MVHFNVAE NGAVIDE SQV FILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 272 TLTTLLNELQTYQSLMKCKGQEREANVATS-KRFNRGSSSGTRSAPSSSGSKTFKKKKAD 331
           TLTTLLNELQT++SLMK KGQ+ EANVATS ++F+RGS+SGT+S PSSSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG- 240

Query: 332 GKGSKHDSAAAAQKGKVKVAEKGKCFHCNMDEHWKRNCPKYLAEKKKANE---------- 391
           G+G+K + AAA    K K A KG CFHCN + HWKRNCPKYLAEKKKA +          
Sbjct: 241 GQGNKANLAAAKTTKKTKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 392 --------------GATNHVCSSFQGISSWRQLDAGEMTLKV 409
                         GATNHVCSSFQGISSWRQL+ GEMT++V
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRV 340

[Close]

BLAST of Moc05g13510 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-19
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 407 KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLSVPRRSGRIVSQPDRY 466
           K+V+NE+S+E T  STRVV++    TRVV   S++R +H PQ L  PRRSGR+ + P RY
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRY 803

Query: 467 VGLTKAQVVIPDDGVKDPLTYMKAMEDTDKHKWVKSMDLEMESM 511
           + LT+   VI D  ++DPLT+ KAMED DK +W+K+M+LE+ESM
Sbjct: 804 MSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESM 846

HSP 2 Score: 417.2 bits (1071), Expect = 2.5e-112
Identity = 221/342 (64.62%), Postives = 265/342 (77.49%), Query Frame = 0


Query: 92  MSTSIIALLPAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQASAPNATVVVRNAYD 151
           M+++ + +L A +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ  A NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 152 RWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFIYNS 211
           RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 212 RMKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVDFILESLPKSFLPFRSNTVMNKLKY 271
           RM EG+SVREHVLN+MVHFNVAE NGAVIDE SQV FILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 272 TLTTLLNELQTYQSLMKCKGQEREANVATS-KRFNRGSSSGTRSAPSSSGSKTFKKKKAD 331
           TLTTLLNELQT++SLMK KGQ+ EANVATS ++F+RGS+SGT+S PSSSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG- 240

Query: 332 GKGSKHDSAAAAQKGKVKVAEKGKCFHCNMDEHWKRNCPKYLAEKKKANE---------- 391
           G+G+K + AAA    K K A KG CFHCN + HWKRNCPKYLAEKKKA +          
Sbjct: 241 GQGNKANLAAAKTTKKAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 392 --------------GATNHVCSSFQGISSWRQLDAGEMTLKV 409
                         GATNHVCSSFQGISSWRQL+ GEMT++V
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRV 340

[Close]

BLAST of Moc05g13510 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-19
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 407 KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLSVPRRSGRIVSQPDRY 466
           K+V+NE+S+E T  STRVV++    TRVV   S++R +H PQ L  PRRSGR+ + P RY
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRY 803

Query: 467 VGLTKAQVVIPDDGVKDPLTYMKAMEDTDKHKWVKSMDLEMESM 511
           + LT+   VI D  ++DPLT+ KAMED DK +W+K+M+LE+ESM
Sbjct: 804 MSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESM 846

HSP 2 Score: 417.2 bits (1071), Expect = 2.5e-112
Identity = 221/342 (64.62%), Postives = 265/342 (77.49%), Query Frame = 0


Query: 92  MSTSIIALLPAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQASAPNATVVVRNAYD 151
           M+++ + +L A +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ  A NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 152 RWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFIYNS 211
           RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 212 RMKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVDFILESLPKSFLPFRSNTVMNKLKY 271
           RM EG+SVREHVLN+MVHFNVAE NGAVIDE SQV FILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 272 TLTTLLNELQTYQSLMKCKGQEREANVATS-KRFNRGSSSGTRSAPSSSGSKTFKKKKAD 331
           TLTTLLNELQT++SLMK KGQ+ EANVATS ++F+RGS+SGT+S PSSSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG- 240

Query: 332 GKGSKHDSAAAAQKGKVKVAEKGKCFHCNMDEHWKRNCPKYLAEKKKANE---------- 391
           G+G+K + AAA    K K A KG CFHCN + HWKRNCPKYLAEKKKA +          
Sbjct: 241 GQGNKANLAAAKTTKKTKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 392 --------------GATNHVCSSFQGISSWRQLDAGEMTLKV 409
                         GATNHVCSSFQGISSWRQL+ GEMT++V
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRV 340

[Close]

BLAST of Moc05g13510 vs. NCBI nr
Match: KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-19
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 407 KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLSVPRRSGRIVSQPDRY 466
           K+V+NE+S+E T  STRVV++    TRVV   S++R +H PQ L  PRRSGR+ + P RY
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRY 803

Query: 467 VGLTKAQVVIPDDGVKDPLTYMKAMEDTDKHKWVKSMDLEMESM 511
           + LT+   VI D  ++DPLT+ KAMED DK +W+K+M+LE+ESM
Sbjct: 804 MSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESM 846

HSP 2 Score: 417.2 bits (1071), Expect = 2.5e-112
Identity = 221/342 (64.62%), Postives = 265/342 (77.49%), Query Frame = 0


Query: 92  MSTSIIALLPAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQASAPNATVVVRNAYD 151
           M+++ + +L A +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ  A NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 152 RWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFIYNS 211
           RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 212 RMKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVDFILESLPKSFLPFRSNTVMNKLKY 271
           RM EG+SVREHVLN+MVHFNVAE NGAVIDE SQV FILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 272 TLTTLLNELQTYQSLMKCKGQEREANVATS-KRFNRGSSSGTRSAPSSSGSKTFKKKKAD 331
           TLTTLLNELQT++SLMK KGQ+ EANVATS ++F+RGS+SGT+S PSSSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG- 240

Query: 332 GKGSKHDSAAAAQKGKVKVAEKGKCFHCNMDEHWKRNCPKYLAEKKKANE---------- 391
           G+G+K + AAA    K K A KG CFHCN + HWKRNCPKYLAEKKKA +          
Sbjct: 241 GQGNKANLAAAKTTKKAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 392 --------------GATNHVCSSFQGISSWRQLDAGEMTLKV 409
                         GATNHVCSSFQGISSWRQL+ GEMT++V
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRV 340

[Close]

BLAST of Moc05g13510 vs. NCBI nr
Match: KAA0047792.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-19
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 407 KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLSVPRRSGRIVSQPDRY 466
           K+V+NE+S+E T  STRVV++    TRVV   S++R +H PQ L  PRRSGR+ + P RY
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRY 803

Query: 467 VGLTKAQVVIPDDGVKDPLTYMKAMEDTDKHKWVKSMDLEMESM 511
           + LT+   VI D  ++DPLT+ KAMED DK +W+K+M+LE+ESM
Sbjct: 804 MSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESM 846

HSP 2 Score: 417.2 bits (1071), Expect = 2.5e-112
Identity = 221/342 (64.62%), Postives = 265/342 (77.49%), Query Frame = 0


Query: 92  MSTSIIALLPAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQASAPNATVVVRNAYD 151
           M+++ + +L A +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ  A NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 152 RWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFIYNS 211
           RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 212 RMKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVDFILESLPKSFLPFRSNTVMNKLKY 271
           RM EG+SVREHVLN+MVHFNVAE NGAVIDE SQV FILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 272 TLTTLLNELQTYQSLMKCKGQEREANVATS-KRFNRGSSSGTRSAPSSSGSKTFKKKKAD 331
           TLTTLLNELQT++SLMK KGQ+ EANVATS ++F+RGS+SGT+S PSSSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG- 240

Query: 332 GKGSKHDSAAAAQKGKVKVAEKGKCFHCNMDEHWKRNCPKYLAEKKKANE---------- 391
           G+G+K + AAA    K K A KG CFHCN + HWKRNCPKYLAEKKKA +          
Sbjct: 241 GQGNKANLAAAKTTKKAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 392 --------------GATNHVCSSFQGISSWRQLDAGEMTLKV 409
                         GATNHVCSSFQGISSWRQL+ GEMT++V
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRV 340

[Close]

BLAST of Moc05g13510 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.2e-112
Identity = 221/342 (64.62%), Postives = 265/342 (77.49%), Query Frame = 0


Query: 92  MSTSIIALLPAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQASAPNATVVVRNAYD 151
           M+++ + +L A +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ  A NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 152 RWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFIYNS 211
           RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 212 RMKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVDFILESLPKSFLPFRSNTVMNKLKY 271
           RM EG+SVREHVLN+MVHFNVAE NGAVIDE SQV FILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 272 TLTTLLNELQTYQSLMKCKGQEREANVATS-KRFNRGSSSGTRSAPSSSGSKTFKKKKAD 331
           TLTTLLNELQT++SLMK KGQ+ EANVATS ++F+RGS+SGT+S PSSSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG- 240

Query: 332 GKGSKHDSAAAAQKGKVKVAEKGKCFHCNMDEHWKRNCPKYLAEKKKANE---------- 391
           G+G+K + AAA    K K A KG CFHCN + HWKRNCPKYLAEKKKA +          
Sbjct: 241 GQGNKANLAAAKTTKKAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 392 --------------GATNHVCSSFQGISSWRQLDAGEMTLKV 409
                         GATNHVCSSFQGISSWRQL+ GEMT++V
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRV 340

[Close]

BLAST of Moc05g13510 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.3e-20
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 407 KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLSVPRRSGRIVSQPDRY 466
           K+V+NE+S+E T  STRVV++    TRVV   S++R +H PQ L  PRRSGR+ + P RY
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRY 803

Query: 467 VGLTKAQVVIPDDGVKDPLTYMKAMEDTDKHKWVKSMDLEMESM 511
           + LT+   VI D  ++DPLT+ KAMED DK +W+K+M+LE+ESM
Sbjct: 804 MSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESM 846

HSP 2 Score: 417.2 bits (1071), Expect = 1.2e-112
Identity = 221/342 (64.62%), Postives = 265/342 (77.49%), Query Frame = 0


Query: 92  MSTSIIALLPAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQASAPNATVVVRNAYD 151
           M+++ + +L A +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ  A NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 152 RWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFIYNS 211
           RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 212 RMKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVDFILESLPKSFLPFRSNTVMNKLKY 271
           RM EG+SVREHVLN+MVHFNVAE NGAVIDE SQV FILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 272 TLTTLLNELQTYQSLMKCKGQEREANVATS-KRFNRGSSSGTRSAPSSSGSKTFKKKKAD 331
           TLTTLLNELQT++SLMK KGQ+ EANVATS ++F+RGS+SGT+S PSSSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG- 240

Query: 332 GKGSKHDSAAAAQKGKVKVAEKGKCFHCNMDEHWKRNCPKYLAEKKKANE---------- 391
           G+G+K + AAA    K K A KG CFHCN + HWKRNCPKYLAEKKKA +          
Sbjct: 241 GQGNKANLAAAKTTKKTKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 392 --------------GATNHVCSSFQGISSWRQLDAGEMTLKV 409
                         GATNHVCSSFQGISSWRQL+ GEMT++V
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRV 340

[Close]

BLAST of Moc05g13510 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.3e-20
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 407 KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLSVPRRSGRIVSQPDRY 466
           K+V+NE+S+E T  STRVV++    TRVV   S++R +H PQ L  PRRSGR+ + P RY
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRY 803

Query: 467 VGLTKAQVVIPDDGVKDPLTYMKAMEDTDKHKWVKSMDLEMESM 511
           + LT+   VI D  ++DPLT+ KAMED DK +W+K+M+LE+ESM
Sbjct: 804 MSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESM 846

HSP 2 Score: 417.2 bits (1071), Expect = 1.2e-112
Identity = 221/342 (64.62%), Postives = 265/342 (77.49%), Query Frame = 0


Query: 92  MSTSIIALLPAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQASAPNATVVVRNAYD 151
           M+++ + +L A +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ  A NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 152 RWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFIYNS 211
           RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 212 RMKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVDFILESLPKSFLPFRSNTVMNKLKY 271
           RM EG+SVREHVLN+MVHFNVAE NGAVIDE SQV FILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 272 TLTTLLNELQTYQSLMKCKGQEREANVATS-KRFNRGSSSGTRSAPSSSGSKTFKKKKAD 331
           TLTTLLNELQT++SLMK KGQ+ EANVATS ++F+RGS+SGT+S PSSSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG- 240

Query: 332 GKGSKHDSAAAAQKGKVKVAEKGKCFHCNMDEHWKRNCPKYLAEKKKANE---------- 391
           G+G+K + AAA    K K A KG CFHCN + HWKRNCPKYLAEKKKA +          
Sbjct: 241 GQGNKANLAAAKTTKKAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 392 --------------GATNHVCSSFQGISSWRQLDAGEMTLKV 409
                         GATNHVCSSFQGISSWRQL+ GEMT++V
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRV 340

[Close]

BLAST of Moc05g13510 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.3e-20
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 407 KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLSVPRRSGRIVSQPDRY 466
           K+V+NE+S+E T  STRVV++    TRVV   S++R +H PQ L  PRRSGR+ + P RY
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRY 803

Query: 467 VGLTKAQVVIPDDGVKDPLTYMKAMEDTDKHKWVKSMDLEMESM 511
           + LT+   VI D  ++DPLT+ KAMED DK +W+K+M+LE+ESM
Sbjct: 804 MSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESM 846

HSP 2 Score: 417.2 bits (1071), Expect = 1.2e-112
Identity = 221/342 (64.62%), Postives = 265/342 (77.49%), Query Frame = 0


Query: 92  MSTSIIALLPAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQASAPNATVVVRNAYD 151
           M+++ + +L A +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ  A NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 152 RWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFIYNS 211
           RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 212 RMKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVDFILESLPKSFLPFRSNTVMNKLKY 271
           RM EG+SVREHVLN+MVHFNVAE NGAVIDE SQV FILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 272 TLTTLLNELQTYQSLMKCKGQEREANVATS-KRFNRGSSSGTRSAPSSSGSKTFKKKKAD 331
           TLTTLLNELQT++SLMK KGQ+ EANVATS ++F+RGS+SGT+S PSSSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG- 240

Query: 332 GKGSKHDSAAAAQKGKVKVAEKGKCFHCNMDEHWKRNCPKYLAEKKKANE---------- 391
           G+G+K + AAA    K K A KG CFHCN + HWKRNCPKYLAEKKKA +          
Sbjct: 241 GQGNKANLAAAKTTKKTKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 392 --------------GATNHVCSSFQGISSWRQLDAGEMTLKV 409
                         GATNHVCSSFQGISSWRQL+ GEMT++V
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRV 340

[Close]

BLAST of Moc05g13510 vs. ExPASy TrEMBL
Match: A0A5D3CSZ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00320 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.3e-20
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 407 KVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLSVPRRSGRIVSQPDRY 466
           K+V+NE+S+E T  STRVV++    TRVV   S++R +H PQ L  PRRSGR+ + P RY
Sbjct: 744 KIVLNELSKETTEPSTRVVEEPSALTRVVHVGSSTR-THQPQSLREPRRSGRVTNLPIRY 803

Query: 467 VGLTKAQVVIPDDGVKDPLTYMKAMEDTDKHKWVKSMDLEMESM 511
           + LT+   VI D  ++DPLT+ KAMED DK +W+K+M+LE+ESM
Sbjct: 804 MSLTETLTVISDGDIEDPLTFKKAMEDVDKDEWIKAMNLELESM 846

HSP 2 Score: 417.2 bits (1071), Expect = 1.2e-112
Identity = 221/342 (64.62%), Postives = 265/342 (77.49%), Query Frame = 0


Query: 92  MSTSIIALLPAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPQASAPNATVVVRNAYD 151
           M+++ + +L A +LNG NY  WK+ +NT+L+IDDLRFVL E+CPQ  A NAT  VR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 152 RWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFIYNS 211
           RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MF Q S Q +H+ALK+IYN+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 212 RMKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVDFILESLPKSFLPFRSNTVMNKLKY 271
           RM EG+SVREHVLN+MVHFNVAE NGAVIDE SQV FILESLP+SFL FRSN VMNK+ Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 272 TLTTLLNELQTYQSLMKCKGQEREANVATS-KRFNRGSSSGTRSAPSSSGSKTFKKKKAD 331
           TLTTLLNELQT++SLMK KGQ+ EANVATS ++F+RGS+SGT+S PSSSG+K +KKKK  
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG- 240

Query: 332 GKGSKHDSAAAAQKGKVKVAEKGKCFHCNMDEHWKRNCPKYLAEKKKANE---------- 391
           G+G+K + AAA    K K A KG CFHCN + HWKRNCPKYLAEKKKA +          
Sbjct: 241 GQGNKANLAAAKTTKKAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLET 300

Query: 392 --------------GATNHVCSSFQGISSWRQLDAGEMTLKV 409
                         GATNHVCSSFQGISSWRQL+ GEMT++V
Sbjct: 301 CLVENDDSAWIIDSGATNHVCSSFQGISSWRQLETGEMTMRV 340

The following BLAST results are available for this feature:

BLAST of Moc05g13510 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14550.1	2.5e-112	64.62	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	1.9e-19	52.88	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	1.9e-19	52.88	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035879.1	1.9e-19	52.88	gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi...	[more]
KAA0047792.1	1.9e-19	52.88	gag/pol protein [Cucumis melo var. makuwa]	[more]

Pages

BLAST of Moc05g13510 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g13510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	1.2e-112	64.62	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5A7SMH8	9.3e-20	52.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	9.3e-20	52.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TWB9	9.3e-20	52.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5D3CSZ6	9.3e-20	52.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G0032...	[more]

Pages

BLAST of Moc05g13510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 153..283 e-value: 3.0E-18 score: 65.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 323..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 433..450
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 433..455
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..322
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 98..376
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 98..376
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 345..374

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g13510.1	Moc05g13510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding