Moc05g13500 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g13500
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ty3-gypsy retrotransposon protein
Location	chr5: 10372020 .. 10373524 (-)
RNA-Seq Expression	Moc05g13500
Synteny	Moc05g13500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCTTGCTATCCTCTCTGGTTTCGAGAACCGTGCTTGTGGGAGCGTCTTGTTTGGAATGTCAGGGAGAGTTAAGGGAGAGCTTGATTGAGAGAAAACTAGAAGGAGTCCTTGCTATGTTCTGTGTTCTGTATTTTTGCAGAACTACAAAGAAAACAAAACAATGACGTGGGGTAACTCCCCACGTCACACTAACCTCCCACTCCCCTGCAATTTTGCAGGGGAGTTTCATATTATTAATATTAATAATATTAATAATATATATATATATATTTATATAAATAATTAATATATATAATATATATATAATAATTAAAATATAAAATTAATTGATTAATTAATAAATAATTATTAATTATTAATCTAATTAATATATATATATATATAAATCAAATAAATAATTAACACTTAATTATTTATCATAAAAATAGAATCATATTCTATAACATTTCTCTCGTATAACCTATAGTTCTAATGTACATCTTATGCACATTATTTTTAACCTATAGTTTTAACATGAATCTTATTCATATTAATTTTATTTGAAGAGACTCTGCATGCTGATGAAGATGGTTGAGGAAAAGGATTACAAGATCGCTTCCCTCATGAACAAGATCGAAGTTTAAGACGTTGCTGAATCCAGCCAGAATCTTGCTGCAAAAGTTAGTGAGAAAAGAAAGAACACCGTGCAAGAAGAACAACAAGAACATTCTGTCTCAATTGCTTCACTGTCCGTCCAACAGCTCCAAAATATGATCACAAATTCGATGAGAGCTCAGTATGGCGGACCGGCTCAAGATTCCATCCTGTACTCCAAGCCGTACACCAAGAGAATTGACAATATGAGATTGCCAACAGGATATCAGCCTCCCAAGTTCCAACAATTTGATGGAAAGAGTAATCCCAAGCAACATATTGCTCATTTCCTCGAAATGTGGGAAAATGCTGGCACTAGAGGAGATCTACTGGTCAAGCAGTTCGTCAGGACGCTGAAAGGCAATGCCTTTGATTGGTACACAGATTTGGAGCCTGAATCTATAAGCAACTGGAAAGAGAATTCCTAAATCGCTTTTACAGCACAAGGCGAACTGTTAGCATGATGGAGCTAACCAGCACTAAGCAACGGAAAGATAAACCTGTTGTCGACTAAATCAATTGGTGGAGAGCTCTAAGCCTCGACTGCAAAGACCGATTGACTGAAGTGTCTGCAATAGAAATGTGCACTTAGGGCATGCATTGGGGACTCCTCTACATTCTCCAGGGAATAAAACCCCGAAGTTTTGAAGAACTAGCAACTCGTGCCCATGACATGGAACTAAGTATCGCTAGCCGAGGGAACAAAGATCATCTTGTCCCATACCTCAAGAAGGAGAAGAAAGAAGTAAAGAACTCTGATAAAATTGCTAAGAGTTCTAAGAAAGAATCCATGGTCGTCAACATGACTCCGTTTAAGTTTTCTACGAAAAGAAGAAACTTCAACGACAAAAAGGATGGAAGATAA

mRNA sequence

ATGTCTTCCTTGCTATCCTCTCTGGTTTCGAGAACCGTGCTTGTGGGAGCGTCTTGTTTGGAATGTCAGGGAGAGTTAAGGGAGAGCTTGATTGAGAGAAAACTAGAAGGAGTCCTTGCTATCCAGAATCTTGCTGCAAAAGTTAGTGAGAAAAGAAAGAACACCGTGCAAGAAGAACAACAAGAACATTCTGTCTCAATTGCTTCACTGTCCGTCCAACAGCTCCAAAATATGATCACAAATTCGATGAGAGCTCAGTATGGCGGACCGGCTCAAGATTCCATCCTGTACTCCAAGCCGTACACCAAGAGAATTGACAATATGAGATTGCCAACAGGATATCAGCCTCCCAAGTTCCAACAATTTGATGGAAAGAGTAATCCCAAGCAACATATTGCTCATTTCCTCGAAATGTGGGAAAATGCTGGCACTAGAGGAGATCTACTGGTCAAGCAGTTCGTCAGGACGCTGAAAGGCAATGCCTTTGATTGCACAAGGCGAACTGTTAGCATGATGGAGCTAACCAGCACTAAGCAACGGAAAGATAAACCTGGCATGCATTGGGGACTCCTCTACATTCTCCAGGGAATAAAACCCCGAAGTTTTGAAGAACTAGCAACTCGTGCCCATGACATGGAACTAAGTATCGCTAGCCGAGGGAACAAAGATCATCTTGTCCCATACCTCAAGAAGGAGAAGAAAGAAGTAAAGAACTCTGATAAAATTGCTAAGAGTTCTAAGAAAGAATCCATGGTCGTCAACATGACTCCGTTTAAGTTTTCTACGAAAAGAAGAAACTTCAACGACAAAAAGGATGGAAGATAA

Coding sequence (CDS)

ATGTCTTCCTTGCTATCCTCTCTGGTTTCGAGAACCGTGCTTGTGGGAGCGTCTTGTTTGGAATGTCAGGGAGAGTTAAGGGAGAGCTTGATTGAGAGAAAACTAGAAGGAGTCCTTGCTATCCAGAATCTTGCTGCAAAAGTTAGTGAGAAAAGAAAGAACACCGTGCAAGAAGAACAACAAGAACATTCTGTCTCAATTGCTTCACTGTCCGTCCAACAGCTCCAAAATATGATCACAAATTCGATGAGAGCTCAGTATGGCGGACCGGCTCAAGATTCCATCCTGTACTCCAAGCCGTACACCAAGAGAATTGACAATATGAGATTGCCAACAGGATATCAGCCTCCCAAGTTCCAACAATTTGATGGAAAGAGTAATCCCAAGCAACATATTGCTCATTTCCTCGAAATGTGGGAAAATGCTGGCACTAGAGGAGATCTACTGGTCAAGCAGTTCGTCAGGACGCTGAAAGGCAATGCCTTTGATTGCACAAGGCGAACTGTTAGCATGATGGAGCTAACCAGCACTAAGCAACGGAAAGATAAACCTGGCATGCATTGGGGACTCCTCTACATTCTCCAGGGAATAAAACCCCGAAGTTTTGAAGAACTAGCAACTCGTGCCCATGACATGGAACTAAGTATCGCTAGCCGAGGGAACAAAGATCATCTTGTCCCATACCTCAAGAAGGAGAAGAAAGAAGTAAAGAACTCTGATAAAATTGCTAAGAGTTCTAAGAAAGAATCCATGGTCGTCAACATGACTCCGTTTAAGTTTTCTACGAAAAGAAGAAACTTCAACGACAAAAAGGATGGAAGATAA

Protein sequence

MSSLLSSLVSRTVLVGASCLECQGELRESLIERKLEGVLAIQNLAAKVSEKRKNTVQEEQQEHSVSIASLSVQQLQNMITNSMRAQYGGPAQDSILYSKPYTKRIDNMRLPTGYQPPKFQQFDGKSNPKQHIAHFLEMWENAGTRGDLLVKQFVRTLKGNAFDCTRRTVSMMELTSTKQRKDKPGMHWGLLYILQGIKPRSFEELATRAHDMELSIASRGNKDHLVPYLKKEKKEVKNSDKIAKSSKKESMVVNMTPFKFSTKRRNFNDKKDGR

Homology

[Close]

BLAST of Moc05g13500 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 2.5e-80
Identity = 172/287 (59.93%), Postives = 198/287 (68.99%), Query Frame = 0


Query: 42  QNLAAKVSEKRKNTVQEEQ-QEHSVSIASLSVQQLQNMITNSMRAQYGGPAQDSILYSKP 101
           Q    KV +K KN VQE Q Q+ S S+ASLSVQQLQ+MITNS+RAQYGGP+Q S +YSKP
Sbjct: 133 QTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSIRAQYGGPSQTSFMYSKP 192

Query: 102 YTKRIDNMRLPTGYQPPKFQQFDGKSNPKQHIAHFLEMWENAGTRGDLLVKQFVRTLKGN 161
           YTKRIDN+R+P GYQPPKFQQFDGK NPKQH+AHF+E  ENAG+RGD LV+QFVR+LKGN
Sbjct: 193 YTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVRSLKGN 252

Query: 162 AFD-------------------------CTRRTVSMMELTSTKQRKDKP----------- 221
           AF+                          TRRTVSMMELT+TKQRK +P           
Sbjct: 253 AFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYINRWRAL 312

Query: 222 -------------------GMHWGLLYILQGIKPRSFEELATRAHDMELSIASRGNKDHL 273
                              GMHWGLLYILQGIKPR+FEELATRAHDMELSIASRG KD L
Sbjct: 313 SLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIASRGTKDFL 372

[Close]

BLAST of Moc05g13500 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 2.5e-80
Identity = 172/287 (59.93%), Postives = 198/287 (68.99%), Query Frame = 0


Query: 42  QNLAAKVSEKRKNTVQEEQ-QEHSVSIASLSVQQLQNMITNSMRAQYGGPAQDSILYSKP 101
           Q    KV +K KN VQE Q Q+ S S+ASLSVQQLQ+MITNS+RAQYGGP+Q S +YSKP
Sbjct: 133 QTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSIRAQYGGPSQTSFMYSKP 192

Query: 102 YTKRIDNMRLPTGYQPPKFQQFDGKSNPKQHIAHFLEMWENAGTRGDLLVKQFVRTLKGN 161
           YTKRIDN+R+P GYQPPKFQQFDGK NPKQH+AHF+E  ENAG+RGD LV+QFVR+LKGN
Sbjct: 193 YTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVRSLKGN 252

Query: 162 AFD-------------------------CTRRTVSMMELTSTKQRKDKP----------- 221
           AF+                          TRRTVSMMELT+TKQRK +P           
Sbjct: 253 AFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYINRWRAL 312

Query: 222 -------------------GMHWGLLYILQGIKPRSFEELATRAHDMELSIASRGNKDHL 273
                              GMHWGLLYILQGIKPR+FEELATRAHDMELSIASRG KD L
Sbjct: 313 SLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIASRGTKDFL 372

[Close]

BLAST of Moc05g13500 vs. NCBI nr
Match: XP_031740568.1 (uncharacterized protein LOC116403508 [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 9.6e-80
Identity = 171/287 (59.58%), Postives = 198/287 (68.99%), Query Frame = 0


Query: 42  QNLAAKVSEKRKNTVQEEQ-QEHSVSIASLSVQQLQNMITNSMRAQYGGPAQDSILYSKP 101
           Q    KV +K KN VQE Q Q+ S S+ASLSVQQLQ+MIT+S+RAQYGGP+Q S +YSKP
Sbjct: 133 QTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQYGGPSQTSFMYSKP 192

Query: 102 YTKRIDNMRLPTGYQPPKFQQFDGKSNPKQHIAHFLEMWENAGTRGDLLVKQFVRTLKGN 161
           YTKRIDN+R+P GYQPPKFQQFDGK NPKQH+AHF+E  ENAG+RGD LV+QFVR+LKGN
Sbjct: 193 YTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVRSLKGN 252

Query: 162 AFD-------------------------CTRRTVSMMELTSTKQRKDKP----------- 221
           AF+                          TRRTVSMMELT+TKQRK +P           
Sbjct: 253 AFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYINRWRAL 312

Query: 222 -------------------GMHWGLLYILQGIKPRSFEELATRAHDMELSIASRGNKDHL 273
                              GMHWGLLYILQGIKPR+FEELATRAHDMELSIASRG KD L
Sbjct: 313 SLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIASRGTKDFL 372

[Close]

BLAST of Moc05g13500 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 1.3e-79
Identity = 171/287 (59.58%), Postives = 198/287 (68.99%), Query Frame = 0


Query: 42  QNLAAKVSEKRKNTVQEEQ-QEHSVSIASLSVQQLQNMITNSMRAQYGGPAQDSILYSKP 101
           Q    KV +K KN VQE Q Q+ S S+ASLSVQQLQ+MIT+S+RAQYGGP+Q S +YSKP
Sbjct: 133 QTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQYGGPSQTSFMYSKP 192

Query: 102 YTKRIDNMRLPTGYQPPKFQQFDGKSNPKQHIAHFLEMWENAGTRGDLLVKQFVRTLKGN 161
           YTKRIDN+R+P GYQPPKFQQFDGK NPKQH+AHF+E  ENAG+RGD LV+QFVR+LKGN
Sbjct: 193 YTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVRSLKGN 252

Query: 162 AFD-------------------------CTRRTVSMMELTSTKQRKDKP----------- 221
           AF+                          TRRTVSMMELT+TKQRK +P           
Sbjct: 253 AFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYINRWRAL 312

Query: 222 -------------------GMHWGLLYILQGIKPRSFEELATRAHDMELSIASRGNKDHL 273
                              GMHWGLLYILQGIKPR+FEELATRAHDMELSIASRG KD L
Sbjct: 313 SLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIASRGTKDFL 372

[Close]

BLAST of Moc05g13500 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 307.0 bits (785), Expect = 1.6e-79
Identity = 171/287 (59.58%), Postives = 198/287 (68.99%), Query Frame = 0


Query: 42  QNLAAKVSEKRKNTVQEEQ-QEHSVSIASLSVQQLQNMITNSMRAQYGGPAQDSILYSKP 101
           Q    KV +K KN VQE Q Q+ S S+ASLSVQQLQ+MIT+S+RAQYGGP+Q S +YSKP
Sbjct: 133 QTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQYGGPSQTSFMYSKP 192

Query: 102 YTKRIDNMRLPTGYQPPKFQQFDGKSNPKQHIAHFLEMWENAGTRGDLLVKQFVRTLKGN 161
           YTKRIDN+R+P GYQPPKFQQFDGK NPKQH+AHF+E  ENAG+RGD LV+QFVR+LKGN
Sbjct: 193 YTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVRSLKGN 252

Query: 162 AFD-------------------------CTRRTVSMMELTSTKQRKDKP----------- 221
           AF+                          TRRTVSMMELT+TKQRK +P           
Sbjct: 253 AFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYINRWRAL 312

Query: 222 -------------------GMHWGLLYILQGIKPRSFEELATRAHDMELSIASRGNKDHL 273
                              GMHWGLLYILQGIKPR+FEELATRAHDMELSIASRG KD L
Sbjct: 313 SLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIASRGTKDFL 372

[Close]

BLAST of Moc05g13500 vs. ExPASy TrEMBL
Match: A0A5A7STA5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00340 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 2.2e-77
Identity = 163/262 (62.21%), Postives = 191/262 (72.90%), Query Frame = 0


Query: 42  QNLAAKVSEKRKNTVQEEQ-QEHSVSIASLSVQQLQNMITNSMRAQYGGPAQDSILYSKP 101
           Q    K + K KN VQE Q Q+ SV +ASLSVQQLQ+MI NS+RAQYGGP Q + +YSKP
Sbjct: 11  QTPVVKATNKGKNVVQENQPQQQSVYVASLSVQQLQDMIANSIRAQYGGPPQTTFMYSKP 70

Query: 102 YTKRIDNMRLPTGYQPPKFQQFDGKSNPKQHIAHFLEMWENAGTRGDLLVKQFVRTLKGN 161
           YTKRIDN+R+P  YQPPKFQQFDGK NPKQHIAHF+E  ENA +RGD LV+QFVR+LKGN
Sbjct: 71  YTKRIDNLRMPLRYQPPKFQQFDGKGNPKQHIAHFVETRENARSRGDQLVRQFVRSLKGN 130

Query: 162 AFDCTRRTVSMMELTSTKQRKDKP------------------------------GMHWGL 221
           AF   +RTVSMMELT+TKQRK +P                              GMHWGL
Sbjct: 131 AF---KRTVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDRLTELSSVEMCTQGMHWGL 190

Query: 222 LYILQGIKPRSFEELATRAHDMELSIASRGNKDHLVPYLKKEKKEVKNSDKIAKSSKKES 273
           LYILQGIKPR+FEELATRAHDMELSIASRG K+  VP ++K+KKE K+++K+ KSS KES
Sbjct: 191 LYILQGIKPRTFEELATRAHDMELSIASRGTKNFPVPEVRKDKKETKSAEKVVKSSVKES 250

[Close]

BLAST of Moc05g13500 vs. ExPASy TrEMBL
Match: A0A5A7T9K9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00280 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 7.0e-76
Identity = 166/295 (56.27%), Postives = 197/295 (66.78%), Query Frame = 0


Query: 26  LRESLIERKLEGVLAIQNLAAKVSEKRKNTVQEEQ-QEHSVSIASLSVQQLQNMITNSMR 85
           LRE +  R  E   + Q    K ++K KN VQE Q Q+ SVS+ASLSVQQLQ+MI N +R
Sbjct: 72  LREQM--RTRETTESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIVNFIR 131

Query: 86  AQYGGPAQDSILYSKPYTKRIDNMRLPTGYQPPKFQQFDGKSNPKQHIAHFLEMWENAGT 145
           AQYGGP Q + +YSKPYTKRID++R+P GYQPPKFQQFDGK NPKQHIAHF+E  ENAG+
Sbjct: 132 AQYGGPPQTTFMYSKPYTKRIDSLRMPLGYQPPKFQQFDGKGNPKQHIAHFVETCENAGS 191

Query: 146 RGDLLVKQFVRTLKGNAFD-------------------------CTRRTVSMMELTSTKQ 205
           RGD LV+QFVR+LKGN F+                           RRTVSMMELT+TKQ
Sbjct: 192 RGDQLVRQFVRSLKGNTFEWYTDLEPEVIDSWEQLEKEFLNRFYSIRRTVSMMELTNTKQ 251

Query: 206 RKDKP------------------------------GMHWGLLYILQGIKPRSFEELATRA 265
           RK +P                              GMHWGLLYILQGIKP +FEELATRA
Sbjct: 252 RKGEPVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPCTFEELATRA 311

[Close]

BLAST of Moc05g13500 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 7.7e-75
Identity = 162/281 (57.65%), Postives = 186/281 (66.19%), Query Frame = 0


Query: 47  KVSEKRKNTVQEEQQEHSVSIASLSVQQLQNMITNSMRAQYGGPAQDSILYSKPYTKRID 106
           K + K K  +QE Q ++S SIASLSVQQLQ MI NS++ QYGGPAQ   LYSKPYTKRID
Sbjct: 139 KNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTFSLYSKPYTKRID 198

Query: 107 NMRLPTGYQPPKFQQFDGKSNPKQHIAHFLEMWENAGTRGDLLVKQFVRTLKGNAFD--- 166
           NMR+P GYQPPKFQQFDGK NPKQH+AHF+E  E AGTRGDLLVKQFVRTLKGNAFD   
Sbjct: 199 NMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYT 258

Query: 167 ----------------------CTRRTVSMMELTSTKQRKDKP----------------- 226
                                  TRR VSM+ELT+TKQRK +P                 
Sbjct: 259 DLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGEPVIDYINRWRALSLDCKD 318

Query: 227 -------------GMHWGLLYILQGIKPRSFEELATRAHDMELSIASRGNKDHLVPYLKK 273
                        GMHWGLLYILQGIKPR+FEELATRAHDMELSIA+RGN D LVP ++K
Sbjct: 319 RLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIANRGNNDLLVPEVRK 378

[Close]

BLAST of Moc05g13500 vs. ExPASy TrEMBL
Match: A0A5A7V8K5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003500 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.9e-73
Identity = 164/296 (55.41%), Postives = 193/296 (65.20%), Query Frame = 0


Query: 33  RKLEGVLAIQNLAAKVSEKRKNTVQEEQ-QEHSVSIASLSVQQLQNMITNSMRAQYGGPA 92
           R  E   + Q    K ++K KN VQE Q Q+ SVS+ASLSVQQLQ+MI NS+RAQY G  
Sbjct: 30  RTRETAESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQYRGQP 89

Query: 93  QDSILYSKPYTKRIDNMRLPTGYQPPKFQQFDGKSNPKQHIAHFLEMWENAGTRGDLLVK 152
           Q + +YSK YTKRIDN+ +P GYQPPKFQQFDGK NPKQHIAHF+E  ENAG+RGD LV+
Sbjct: 90  QTTFMYSKSYTKRIDNLIMPLGYQPPKFQQFDGKGNPKQHIAHFVETCENAGSRGDQLVR 149

Query: 153 QFVRTLKGNAFD-------------------------CTRRTVSMMELTSTKQRKDKP-- 212
           QFVR+LKGNAF+                          TRRT+SMMELT+TKQ K +P  
Sbjct: 150 QFVRSLKGNAFEWYTDLEPKVIDSWEQLEKEFLNRFYSTRRTISMMELTNTKQWKGEPVI 209

Query: 213 ----------------------------GMHWGLLYILQGIKPRSFEELATRAHDMELSI 272
                                       GMHWGLLYILQGIKPR+FEELATRAHDMELSI
Sbjct: 210 DYINRWRALSLDCKDRLTKLSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSI 269

[Close]

BLAST of Moc05g13500 vs. ExPASy TrEMBL
Match: A0A5A7VE63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00390 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 2.5e-73
Identity = 157/272 (57.72%), Postives = 182/272 (66.91%), Query Frame = 0


Query: 56  VQEEQQEHSVSIASLSVQQLQNMITNSMRAQYGGPAQDSILYSKPYTKRIDNMRLPTGYQ 115
           +QE Q ++S SIASLSVQQLQ MI NS++ QYGGPAQ   LYSKPYTKRIDNMR+P GYQ
Sbjct: 1   MQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTFSLYSKPYTKRIDNMRMPHGYQ 60

Query: 116 PPKFQQFDGKSNPKQHIAHFLEMWENAGTRGDLLVKQFVRTLKGNAFD------------ 175
            PKFQQFDGK NPKQH+AHF+E  E AGTRGDLLVKQFV+TLKGNAFD            
Sbjct: 61  TPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVQTLKGNAFDWYTDLEPESIDS 120

Query: 176 -------------CTRRTVSMMELTSTKQRKDKP-------------------------- 235
                         TRR VSM+ELT+TKQRK +P                          
Sbjct: 121 WEQLERDFLNRFYSTRRIVSMIELTATKQRKGEPVIDYINRWRALSLDCKDRLTELSAVE 180

Query: 236 ----GMHWGLLYILQGIKPRSFEELATRAHDMELSIASRGNKDHLVPYLKKEKKEVKNSD 273
               GMHWGLLYILQGIKPR+FEELATRAHDMELSIA+RGN D LVP ++KEKKEVK++ 
Sbjct: 181 MCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIANRGNNDLLVPEVRKEKKEVKSTQ 240

The following BLAST results are available for this feature:

BLAST of Moc05g13500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742199.1	2.5e-80	59.93	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	2.5e-80	59.93	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031740568.1	9.6e-80	59.58	uncharacterized protein LOC116403508 [Cucumis sativus]	[more]
XP_031739134.1	1.3e-79	59.58	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	1.6e-79	59.58	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]

BLAST of Moc05g13500 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g13500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STA5	2.2e-77	62.21	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T9K9	7.0e-76	56.27	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TZU9	7.7e-75	57.65	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7V8K5	1.9e-73	55.41	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VE63	2.5e-73	57.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Moc05g13500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g13500.1	Moc05g13500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0003676	nucleic acid binding