Moc05g13100 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g13100
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr5: 10087316 .. 10087968 (+)
RNA-Seq Expression	Moc05g13100
Synteny	Moc05g13100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACATATCAAGCAACGGTGGACATACCGGAAGTACAAGATTCGATGAAAGAAGTGATCAGTAAACTTCAAAGCGATTTTGAAGCTCCGAGGCAAAGCTGTAAGACGATGCCACTTGGGTGGAGCTCGAAAAATGAGAAGATCCTCCTTTCACGGCTCCCATAATGGCATATCCCCTCCCACCAAAAATGAAGAAGCATGATAGGAAGCCATATGACGGATGAGTCGATCTAGTAGATCATATAGAATTATACGAAGGCTTAATGGAGTTAAGCGCAATGAGAGATGAAATGAAGTGCAGAGTCTTTTTTGTCACTCTAAAAGGTCAAGCTCGATCATGGTATCGGCAATTGAAGCCACATTCCATTGGCTCCTGGAGGCAACTAAGAATAGTTTTTATTAATCAATTTTTTGCACAGCATGACAGGAAAAAGCCATACACGCATCTGCTGACTATTCATCAAACAAACGATGAATCGCTGTGCGAGTTTGTTGGGAGGTTCATGGTTGAGAAAATCAAAGTACCTGACTGCTCGGATGATGTAGCCAAGATGACATTTATGTCAGCTATAAACAACCCAGACTTAATTCAATCCTACGCTTTGCAACTAGCGCGGACTTATAGTGAAGTTATCCAACGTGCACGTTAG

mRNA sequence

ATGTCGACATATCAAGCAACGGTGGACATACCGGAAGTACAAGATTCGATGAAAGAAGTGATCAGTAAACTTCAAAGCGATTTTGAAGCTCCGAGGCAAAGCTGTCAAGCTCGATCATGGTATCGGCAATTGAAGCCACATTCCATTGGCTCCTGGAGGCAACTAAGAATAGTTTTTATTAATCAATTTTTTGCACAGCATGACAGGAAAAAGCCATACACGCATCTGCTGACTATTCATCAAACAAACGATGAATCGCTGTGCGAGTTTGTTGGGAGGTTCATGGTTGAGAAAATCAAAGTACCTGACTGCTCGGATGATGTAGCCAAGATGACATTTATGTCAGCTATAAACAACCCAGACTTAATTCAATCCTACGCTTTGCAACTAGCGCGGACTTATAGTGAAGTTATCCAACGTGCACGTTAG

Coding sequence (CDS)

ATGTCGACATATCAAGCAACGGTGGACATACCGGAAGTACAAGATTCGATGAAAGAAGTGATCAGTAAACTTCAAAGCGATTTTGAAGCTCCGAGGCAAAGCTGTCAAGCTCGATCATGGTATCGGCAATTGAAGCCACATTCCATTGGCTCCTGGAGGCAACTAAGAATAGTTTTTATTAATCAATTTTTTGCACAGCATGACAGGAAAAAGCCATACACGCATCTGCTGACTATTCATCAAACAAACGATGAATCGCTGTGCGAGTTTGTTGGGAGGTTCATGGTTGAGAAAATCAAAGTACCTGACTGCTCGGATGATGTAGCCAAGATGACATTTATGTCAGCTATAAACAACCCAGACTTAATTCAATCCTACGCTTTGCAACTAGCGCGGACTTATAGTGAAGTTATCCAACGTGCACGTTAG

Protein sequence

MSTYQATVDIPEVQDSMKEVISKLQSDFEAPRQSCQARSWYRQLKPHSIGSWRQLRIVFINQFFAQHDRKKPYTHLLTIHQTNDESLCEFVGRFMVEKIKVPDCSDDVAKMTFMSAINNPDLIQSYALQLARTYSEVIQRAR

Homology

[Close]

BLAST of Moc05g13100 vs. NCBI nr
Match: XP_022151609.1 (uncharacterized protein LOC111019523 [Momordica charantia])

HSP 1 Score: 154.5 bits (389), Expect = 7.1e-34
Identity = 80/107 (74.77%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 36  QARSWYRQLKPHSIGSWRQLRIVFINQFFAQHDRKKPYTHLLTIHQTNDESLCEFVGRFM 95
           +ARSWYRQLK  SI  W QLR VFINQF AQHDRKK  THLLTI Q   ESL EFVGRF+
Sbjct: 55  RARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEGESLHEFVGRFV 114

Query: 96  VEKIKVPDCSDDVAKMTFMSAINNPDLIQSYALQLARTYSEVIQRAR 143
            EKIKV DCS+DVA+MTFMS IN P+LIQSYALQ  RTY+E IQRAR
Sbjct: 115 TEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRAR 161

[Close]

BLAST of Moc05g13100 vs. NCBI nr
Match: XP_022155997.1 (uncharacterized protein LOC111022972 [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 8.4e-19
Identity = 54/72 (75.00%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 71  KPYTHLLTIHQTNDESLCEFVGRFMVEKIKVPDCSDDVAKMTFMSAINNPDLIQSYALQL 130
           K  THL+TI Q   ESL EFVGRFM+EKIKVPD SDDVA+MTFM A+NN DLIQSYALQ 
Sbjct: 4   KSRTHLMTILQEESESLREFVGRFMLEKIKVPDYSDDVARMTFMVAVNNLDLIQSYALQP 63

Query: 131 ARTYSEVIQRAR 143
             TYSE IQRAR
Sbjct: 64  THTYSEAIQRAR 75

[Close]

BLAST of Moc05g13100 vs. NCBI nr
Match: XP_022149029.1 (uncharacterized protein LOC111017548 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 4.3e-15
Identity = 45/105 (42.86%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 38  RSWYRQLKPHSIGSWRQLRIVFINQFFAQHDRKKPYTHLLTIHQTNDESLCEFVGRFMVE 97
           R WY+QLKP SI S++QLR +FINQF A+   K P +HL T+ Q ++ESL E++ R M E
Sbjct: 24  RLWYQQLKPRSIDSYQQLRRLFINQFSARQLLKLPPSHLETVKQRDNESLTEYIARLMDE 83

Query: 98  KIKVPDCSDDVAKMTFMSAINNPDLIQSYALQLARTYSEVIQRAR 143
            +KV  C+DD+A M F + +N+ +L   +  +   + ++++ RAR
Sbjct: 84  HVKVVSCTDDIAMMYFTTGLNDRNLTIEFGSRPPASLNKMLARAR 128

[Close]

BLAST of Moc05g13100 vs. NCBI nr
Match: XP_022159250.1 (uncharacterized protein LOC111025663 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-13
Identity = 44/106 (41.51%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 37  ARSWYRQLKPHSIGSWRQLRIVFINQFFAQHDRKKPYTHLLTIHQTNDESLCEFVGRFMV 96
           AR WYR+L   SI ++ QLR  FI+QF ++H  +K  THL TI Q   E+L E+V RF+ 
Sbjct: 93  ARLWYRRLPARSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLREYVTRFLE 152

Query: 97  EKIKVPDCSDDVAKMTFMSAINNPDLIQSYALQLARTYSEVIQRAR 143
           E++KV  CSDD A   F++ + + +L      +   T++EV+Q+A+
Sbjct: 153 EQLKVAHCSDDSAMCYFLTGLADENLTVKLGEEAPATFAEVLQKAK 198

[Close]

BLAST of Moc05g13100 vs. NCBI nr
Match: XP_022152851.1 (uncharacterized protein LOC111020475 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-13
Identity = 51/142 (35.92%), Postives = 76/142 (53.52%), Query Frame = 0


Query: 1   MSTYQATVDIPEVQDSMKEVISKLQSDFEAPRQSCQARSWYRQLKPHSIGSWRQLRIVFI 60
           +  ++  +D   V D+MK      Q   E        R WYRQLK  SI S++QLR +FI
Sbjct: 14  VEVFEGKMDFLAVSDAMK--CGAFQITLEG-----STRLWYRQLKLRSIDSYQQLRRLFI 73

Query: 61  NQFFAQHDRKKPYTHLLTIHQTNDESLCEFVGRFMVEKIKVPDCSDDVAKMTFMSAINNP 120
           NQF  +   K P +HL T+ Q ++ES   ++ RFM E +KV  C+DD+A M F + +N+ 
Sbjct: 74  NQFSTRQFLKLPLSHLGTVKQRDNESFTVYIARFMDEHVKVVSCTDDIAMMYFTTGLNDR 133

Query: 121 DLIQSYALQLARTYSEVIQRAR 143
           +L   +        +E+  RAR
Sbjct: 134 NLTIEFGSYQPAYLNEMFARAR 148

[Close]

BLAST of Moc05g13100 vs. ExPASy TrEMBL
Match: A0A6J1DDJ7 (uncharacterized protein LOC111019523 OS=Momordica charantia OX=3673 GN=LOC111019523 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.4e-34
Identity = 80/107 (74.77%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 36  QARSWYRQLKPHSIGSWRQLRIVFINQFFAQHDRKKPYTHLLTIHQTNDESLCEFVGRFM 95
           +ARSWYRQLK  SI  W QLR VFINQF AQHDRKK  THLLTI Q   ESL EFVGRF+
Sbjct: 55  RARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEGESLHEFVGRFV 114

Query: 96  VEKIKVPDCSDDVAKMTFMSAINNPDLIQSYALQLARTYSEVIQRAR 143
            EKIKV DCS+DVA+MTFMS IN P+LIQSYALQ  RTY+E IQRAR
Sbjct: 115 TEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRAR 161

[Close]

BLAST of Moc05g13100 vs. ExPASy TrEMBL
Match: A0A6J1DQW1 (uncharacterized protein LOC111022972 OS=Momordica charantia OX=3673 GN=LOC111022972 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.1e-19
Identity = 54/72 (75.00%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 71  KPYTHLLTIHQTNDESLCEFVGRFMVEKIKVPDCSDDVAKMTFMSAINNPDLIQSYALQL 130
           K  THL+TI Q   ESL EFVGRFM+EKIKVPD SDDVA+MTFM A+NN DLIQSYALQ 
Sbjct: 4   KSRTHLMTILQEESESLREFVGRFMLEKIKVPDYSDDVARMTFMVAVNNLDLIQSYALQP 63

Query: 131 ARTYSEVIQRAR 143
             TYSE IQRAR
Sbjct: 64  THTYSEAIQRAR 75

[Close]

BLAST of Moc05g13100 vs. ExPASy TrEMBL
Match: A0A6J1D5T3 (uncharacterized protein LOC111017548 OS=Momordica charantia OX=3673 GN=LOC111017548 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-15
Identity = 45/105 (42.86%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 38  RSWYRQLKPHSIGSWRQLRIVFINQFFAQHDRKKPYTHLLTIHQTNDESLCEFVGRFMVE 97
           R WY+QLKP SI S++QLR +FINQF A+   K P +HL T+ Q ++ESL E++ R M E
Sbjct: 24  RLWYQQLKPRSIDSYQQLRRLFINQFSARQLLKLPPSHLETVKQRDNESLTEYIARLMDE 83

Query: 98  KIKVPDCSDDVAKMTFMSAINNPDLIQSYALQLARTYSEVIQRAR 143
            +KV  C+DD+A M F + +N+ +L   +  +   + ++++ RAR
Sbjct: 84  HVKVVSCTDDIAMMYFTTGLNDRNLTIEFGSRPPASLNKMLARAR 128

[Close]

BLAST of Moc05g13100 vs. ExPASy TrEMBL
Match: A0A6J1DY58 (uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025663 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.1e-14
Identity = 44/106 (41.51%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 37  ARSWYRQLKPHSIGSWRQLRIVFINQFFAQHDRKKPYTHLLTIHQTNDESLCEFVGRFMV 96
           AR WYR+L   SI ++ QLR  FI+QF ++H  +K  THL TI Q   E+L E+V RF+ 
Sbjct: 93  ARLWYRRLPARSISTYSQLRKEFISQFSSRHYDRKTATHLATIRQKEGETLREYVTRFLE 152

Query: 97  EKIKVPDCSDDVAKMTFMSAINNPDLIQSYALQLARTYSEVIQRAR 143
           E++KV  CSDD A   F++ + + +L      +   T++EV+Q+A+
Sbjct: 153 EQLKVAHCSDDSAMCYFLTGLADENLTVKLGEEAPATFAEVLQKAK 198

[Close]

BLAST of Moc05g13100 vs. ExPASy TrEMBL
Match: A0A6J1DIZ8 (uncharacterized protein LOC111020475 OS=Momordica charantia OX=3673 GN=LOC111020475 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.7e-14
Identity = 51/142 (35.92%), Postives = 76/142 (53.52%), Query Frame = 0


Query: 1   MSTYQATVDIPEVQDSMKEVISKLQSDFEAPRQSCQARSWYRQLKPHSIGSWRQLRIVFI 60
           +  ++  +D   V D+MK      Q   E        R WYRQLK  SI S++QLR +FI
Sbjct: 14  VEVFEGKMDFLAVSDAMK--CGAFQITLEG-----STRLWYRQLKLRSIDSYQQLRRLFI 73

Query: 61  NQFFAQHDRKKPYTHLLTIHQTNDESLCEFVGRFMVEKIKVPDCSDDVAKMTFMSAINNP 120
           NQF  +   K P +HL T+ Q ++ES   ++ RFM E +KV  C+DD+A M F + +N+ 
Sbjct: 74  NQFSTRQFLKLPLSHLGTVKQRDNESFTVYIARFMDEHVKVVSCTDDIAMMYFTTGLNDR 133

Query: 121 DLIQSYALQLARTYSEVIQRAR 143
           +L   +        +E+  RAR
Sbjct: 134 NLTIEFGSYQPAYLNEMFARAR 148

The following BLAST results are available for this feature:

BLAST of Moc05g13100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151609.1	7.1e-34	74.77	uncharacterized protein LOC111019523 [Momordica charantia]	[more]
XP_022155997.1	8.4e-19	75.00	uncharacterized protein LOC111022972 [Momordica charantia]	[more]
XP_022149029.1	4.3e-15	42.86	uncharacterized protein LOC111017548 [Momordica charantia]	[more]
XP_022159250.1	1.1e-13	41.51	uncharacterized protein LOC111025663 [Momordica charantia]	[more]
XP_022152851.1	1.4e-13	35.92	uncharacterized protein LOC111020475 [Momordica charantia]	[more]

BLAST of Moc05g13100 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g13100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDJ7	3.4e-34	74.77	uncharacterized protein LOC111019523 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DQW1	4.1e-19	75.00	uncharacterized protein LOC111022972 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1D5T3	2.1e-15	42.86	uncharacterized protein LOC111017548 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DY58	5.1e-14	41.51	uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DIZ8	6.7e-14	35.92	uncharacterized protein LOC111020475 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Moc05g13100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 36..115 e-value: 1.1E-10 score: 41.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g13100.1	Moc05g13100.1	mRNA