Moc05g12650 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g12650
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Locationchr5: 9755775 .. 9756152 (+)
RNA-Seq ExpressionMoc05g12650
SyntenyMoc05g12650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTTCCACCTGAATCAAAAGATTGTTCTGTGATAAAAATCCTGGATGAGGCATTAATGGAAGAAATGGAAGCAGAAGTCATGCTAGAGCATCTAGAAGTGGTCGACTCTGGAAGCGACCTTGAGAACATAGAGGAAGACCAAGAGGTTATTTACTTAAATAGCAGCGAAAGATCAGCCAAAAGCATACGCGAATCTCTGGACATGGCGAATCATGAGTATAAATTTCTGAACTCGTCCGTAGAAGAACCACCGTTGCTCGAGCTTAAAGCATTGCCCCAACACCTCAAATATGCTTACTTGGTTTCGTCGGTGCCAATCATAATAGCAGTAGACTTAGCCATAGAGAAGAAGCAGATGTTGCTGGCGTGTTAA

mRNA sequence

ATGAAATTTCCACCTGAATCAAAAGATTGTTCTGTGATAAAAATCCTGGATGAGGCATTAATGGAAGAAATGGAAGCAGAAGTCATGCTAGAGCATCTAGAAGTGGTCGACTCTGGAAGCGACCTTGAGAACATAGAGGAAGACCAAGAGGTTATTTACTTAAATAGCAGCGAAAGATCAGCCAAAAGCATACGCGAATCTCTGGACATGGCGAATCATGAGTATAAATTTCTGAACTCGTCCGTAGAAGAACCACCGTTGCTCGAGCTTAAAGCATTGCCCCAACACCTCAAATATGCTTACTTGGTTTCGTCGGTGCCAATCATAATAGCAGTAGACTTAGCCATAGAGAAGAAGCAGATGTTGCTGGCGTGTTAA

Coding sequence (CDS)

ATGAAATTTCCACCTGAATCAAAAGATTGTTCTGTGATAAAAATCCTGGATGAGGCATTAATGGAAGAAATGGAAGCAGAAGTCATGCTAGAGCATCTAGAAGTGGTCGACTCTGGAAGCGACCTTGAGAACATAGAGGAAGACCAAGAGGTTATTTACTTAAATAGCAGCGAAAGATCAGCCAAAAGCATACGCGAATCTCTGGACATGGCGAATCATGAGTATAAATTTCTGAACTCGTCCGTAGAAGAACCACCGTTGCTCGAGCTTAAAGCATTGCCCCAACACCTCAAATATGCTTACTTGGTTTCGTCGGTGCCAATCATAATAGCAGTAGACTTAGCCATAGAGAAGAAGCAGATGTTGCTGGCGTGTTAA

Protein sequence

MKFPPESKDCSVIKILDEALMEEMEAEVMLEHLEVVDSGSDLENIEEDQEVIYLNSSERSAKSIRESLDMANHEYKFLNSSVEEPPLLELKALPQHLKYAYLVSSVPIIIAVDLAIEKKQMLLAC
Homology
BLAST of Moc05g12650 vs. NCBI nr
Match: XP_022158578.1 (uncharacterized protein LOC111025032 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-12
Identity = 59/119 (49.58%), Postives = 80/119 (67.23%), Query Frame = 0

Query: 12  VIKILDEALMEEMEAEVMLE-HLEVVDSGSDLENIEEDQEVIYLNSSERSAKS---IRES 71
           V+++LDEA+ME + AE MLE H   VD+  D  + E  QE++YL+     A+S   + ES
Sbjct: 120 VLRVLDEAVMESLSAETMLEQHNSEVDNMLDKVD-EICQEILYLDCEGDLARSWSIVHES 179

Query: 72  LDMANHEYKFLNSSVEEPPLLELKALPQHLKYAYLVSS--VPIIIAVDLAIEKKQMLLA 125
           L++ + + K L  S +EPP LELKALPQHLKYAYL +S  +PIIIA +L  EK+  LLA
Sbjct: 180 LELEDIKCKQLKPSFDEPPELELKALPQHLKYAYLEASNMLPIIIAANLTTEKENELLA 237

BLAST of Moc05g12650 vs. NCBI nr
Match: XP_017233064.1 (PREDICTED: uncharacterized protein LOC108207111 [Daucus carota subsp. sativus])

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-10
Identity = 48/127 (37.80%), Postives = 79/127 (62.20%), Query Frame = 0

Query: 1   MKFPPESKDCSVIKILDEALMEEMEAEVMLEHLEVVDSGSDLENIEEDQEVIYL--NSSE 60
           MK+  + +DCS I I DE + +++E+    + LE +      E  +  + + +L  NS  
Sbjct: 100 MKYSDDVEDCSAITIFDELISDKLESNSSHDPLEQLILNVSQEEDDNVELLAWLEANSQV 159

Query: 61  RSAKSIRESLDMANHEYKFLNSSVEEPPLLELKALPQHLKYAYL--VSSVPIIIAVDLAI 120
              +   ESLD+++ E+K   SS++EPP LELKALP HLKYAYL   S++P+II+ +L+I
Sbjct: 160 TRTRGRFESLDLSSREFKTPKSSIDEPPELELKALPSHLKYAYLGPSSTLPVIISAELSI 219

Query: 121 EKKQMLL 124
            +++ L+
Sbjct: 220 AQEEKLV 226

BLAST of Moc05g12650 vs. NCBI nr
Match: KAG8501049.1 (hypothetical protein CXB51_003148 [Gossypium anomalum])

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-10
Identity = 48/129 (37.21%), Postives = 80/129 (62.02%), Query Frame = 0

Query: 1   MKFPPESKDCSVIKILDEALMEE--MEAEVMLEHLEVVDSGSDLENIEEDQEVIYLNSSE 60
           M+FP    DCSV+  L++ ++E+     E +LE +  +D  SD    EED+ +  L +++
Sbjct: 510 MQFPDAIDDCSVVSDLEDLIVEKELNSVEDLLERILTLDPPSD---EEEDENLALLEANQ 569

Query: 61  R--SAKSIRESLDMANHEYKFLNSSVEEPPLLELKALPQHLKYAYL--VSSVPIIIAVDL 120
           +  + +S  ESLD+   +Y    +S+EEPP LELK LP HLKY YL   S++P+I++ +L
Sbjct: 570 KGFNPQSRFESLDLEERDYTQPKASIEEPPKLELKVLPSHLKYVYLGNASTLPVIVSAEL 629

Query: 121 AIEKKQMLL 124
             E+++ L+
Sbjct: 630 TTEQEEKLI 635

BLAST of Moc05g12650 vs. NCBI nr
Match: XP_022143500.1 (uncharacterized protein LOC111013378 [Momordica charantia])

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-10
Identity = 52/131 (39.69%), Postives = 85/131 (64.89%), Query Frame = 0

Query: 1   MKFPPESKDCSVIKILDEALMEEMEAEVMLEHLEVVDSGSDLENIEE-DQEVIYLNSSER 60
           MK+P ++ + +V+++LDEA+++ + AE MLE  +  +  + LE  +E  QE++Y + +  
Sbjct: 133 MKYPSDAGERAVLRVLDEAVLKSLSAEAMLEK-QNGEVDTVLEQADEICQEILYFDCTSD 192

Query: 61  SAKS---IRESLDMANHEYKFLNSSVEEPPLLELKALPQHLKYAYLVSS--VPIIIAVDL 120
            A+S   + ESL + +   K L +S+EE P L LKA+P+H+KYAYL +S  +PIII   L
Sbjct: 193 LARSWSRVHESLVLEDIGRKQLKTSIEETPELVLKAVPKHMKYAYLGASNMLPIIIVAYL 252

Query: 121 AIEKKQMLLAC 126
            +EK+  LL C
Sbjct: 253 IVEKENELLQC 262

BLAST of Moc05g12650 vs. NCBI nr
Match: XP_017227899.1 (PREDICTED: uncharacterized protein LOC108203467 [Daucus carota subsp. sativus])

HSP 1 Score: 72.4 bits (176), Expect = 3.1e-09
Identity = 50/132 (37.88%), Postives = 82/132 (62.12%), Query Frame = 0

Query: 1   MKFPPESKDCSVIKILDEALMEEMEAEVMLEHLEVVDSGSDLENI--EEDQEVIYLNSSE 60
           MK+  + +DCS I I DE + +++++    + LE +     + N+  EED  V  L   E
Sbjct: 334 MKYSDDVEDCSAITIFDELISDKLDSNSSHDPLEQL-----ILNVSQEEDDNVELLAWLE 393

Query: 61  RSAKSIR-----ESLDMANHEYKFLNSSVEEPPLLELKALPQHLKYAYL--VSSVPIIIA 120
            +++  R     ESLD+++ E+K   SS++EPP LELK LP HLKYAYL   S++P+II+
Sbjct: 394 ANSQVTRTSGRFESLDLSSREFKTPKSSIDEPPELELKDLPSHLKYAYLGPSSTLPVIIS 453

Query: 121 VDLAIEKKQMLL 124
            +L+I +++ L+
Sbjct: 454 AELSIAEEEKLV 460

BLAST of Moc05g12650 vs. ExPASy TrEMBL
Match: A0A6J1DWH3 (uncharacterized protein LOC111025032 OS=Momordica charantia OX=3673 GN=LOC111025032 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.5e-13
Identity = 59/119 (49.58%), Postives = 80/119 (67.23%), Query Frame = 0

Query: 12  VIKILDEALMEEMEAEVMLE-HLEVVDSGSDLENIEEDQEVIYLNSSERSAKS---IRES 71
           V+++LDEA+ME + AE MLE H   VD+  D  + E  QE++YL+     A+S   + ES
Sbjct: 120 VLRVLDEAVMESLSAETMLEQHNSEVDNMLDKVD-EICQEILYLDCEGDLARSWSIVHES 179

Query: 72  LDMANHEYKFLNSSVEEPPLLELKALPQHLKYAYLVSS--VPIIIAVDLAIEKKQMLLA 125
           L++ + + K L  S +EPP LELKALPQHLKYAYL +S  +PIIIA +L  EK+  LLA
Sbjct: 180 LELEDIKCKQLKPSFDEPPELELKALPQHLKYAYLEASNMLPIIIAANLTTEKENELLA 237

BLAST of Moc05g12650 vs. ExPASy TrEMBL
Match: A0A6J1CNZ2 (uncharacterized protein LOC111013378 OS=Momordica charantia OX=3673 GN=LOC111013378 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10
Identity = 52/131 (39.69%), Postives = 85/131 (64.89%), Query Frame = 0

Query: 1   MKFPPESKDCSVIKILDEALMEEMEAEVMLEHLEVVDSGSDLENIEE-DQEVIYLNSSER 60
           MK+P ++ + +V+++LDEA+++ + AE MLE  +  +  + LE  +E  QE++Y + +  
Sbjct: 133 MKYPSDAGERAVLRVLDEAVLKSLSAEAMLEK-QNGEVDTVLEQADEICQEILYFDCTSD 192

Query: 61  SAKS---IRESLDMANHEYKFLNSSVEEPPLLELKALPQHLKYAYLVSS--VPIIIAVDL 120
            A+S   + ESL + +   K L +S+EE P L LKA+P+H+KYAYL +S  +PIII   L
Sbjct: 193 LARSWSRVHESLVLEDIGRKQLKTSIEETPELVLKAVPKHMKYAYLGASNMLPIIIVAYL 252

Query: 121 AIEKKQMLLAC 126
            +EK+  LL C
Sbjct: 253 IVEKENELLQC 262

BLAST of Moc05g12650 vs. ExPASy TrEMBL
Match: A0A6J1D1L0 (uncharacterized protein LOC111016198 OS=Momordica charantia OX=3673 GN=LOC111016198 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.8e-08
Identity = 51/129 (39.53%), Postives = 76/129 (58.91%), Query Frame = 0

Query: 1   MKFPPESKDCSVIKILDEALMEEMEAEVMLEHLEVVDSGSDLENIEEDQEVIYLN----S 60
           +KFP + ++CS++++ D+   EEM+ E +L+ LE  +     E  E++ ++I       S
Sbjct: 133 IKFPADIEECSLLRLADDLRSEEMQTEELLDQLE-EEITKIFEEKEKEAKLIQGRPNEAS 192

Query: 61  SERSAKSIRESLDMANHEYKFLNSSVEEPPLLELKALPQHLKYAYL--VSSVPIIIAVDL 120
           S+R  K   ES ++ + E   L SSVE+   LELK LP HLKYAYL    ++ I IA DL
Sbjct: 193 SDRVYKKAFESSELKDREQASLQSSVEKASKLELKVLPTHLKYAYLGKAETLAINIAADL 252

Query: 121 AIEKKQMLL 124
           A EKK+  L
Sbjct: 253 A-EKKEFRL 259

BLAST of Moc05g12650 vs. ExPASy TrEMBL
Match: A0A6J1CS22 (uncharacterized protein LOC111013805 OS=Momordica charantia OX=3673 GN=LOC111013805 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-07
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 0

Query: 1   MKFPPESKDCSVIKILDEALMEEMEAEVMLEHLEVVDSGSDLENIEEDQEVI---YLNSS 60
           MKF  ES++CSV+KILDEALMEE+E EVMLE LE V + S +E  EE+ E +    LN++
Sbjct: 335 MKFSAESEECSVLKILDEALMEELEXEVMLERLEAVGAKSVVEAFEEELEDVKSECLNTN 394

Query: 61  ERSAKSIRESLDM 71
           +   K I ESLD+
Sbjct: 395 KGFVKKIYESLDV 407

BLAST of Moc05g12650 vs. ExPASy TrEMBL
Match: A0A2G9HWC5 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05521 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-06
Identity = 52/129 (40.31%), Postives = 69/129 (53.49%), Query Frame = 0

Query: 1   MKFPPESKDCSVIKILDEALMEEMEAEVMLEHLE-----VVDSGSDLENIEEDQEVIYLN 60
           MKFP ES +C  + + D     E  AE  L+ LE     ++D G+     EED EV+   
Sbjct: 455 MKFPNESDECFAVSLFDNFAGNESIAEQPLDSLERALLDLIDEGN-----EEDLEVVKTL 514

Query: 61  SSERSAKSIR-ESLDMANHEYKFLNSSVEEPPLLELKALPQHLKYAYLVSS--VPIIIA- 119
            + +  KS   ESL+    + K L  S+EEPP LELK LP HL Y YL  S  +P+II+ 
Sbjct: 515 DASKFFKSRGVESLERTT-QSKVLKPSIEEPPTLELKPLPSHLCYVYLGESDTLPVIISS 574

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158578.11.8e-1249.58uncharacterized protein LOC111025032 [Momordica charantia][more]
XP_017233064.12.8e-1037.80PREDICTED: uncharacterized protein LOC108207111 [Daucus carota subsp. sativus][more]
KAG8501049.13.7e-1037.21hypothetical protein CXB51_003148 [Gossypium anomalum][more]
XP_022143500.13.7e-1039.69uncharacterized protein LOC111013378 [Momordica charantia][more]
XP_017227899.13.1e-0937.88PREDICTED: uncharacterized protein LOC108203467 [Daucus carota subsp. sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DWH38.5e-1349.58uncharacterized protein LOC111025032 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1CNZ21.8e-1039.69uncharacterized protein LOC111013378 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1D1L04.8e-0839.53uncharacterized protein LOC111016198 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A6J1CS223.1e-0754.79uncharacterized protein LOC111013805 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A2G9HWC52.7e-0640.31DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_055... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g12650.1Moc05g12650.1mRNA