Moc05g12630 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g12630
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr5: 9748850 .. 9750834 (+)
RNA-Seq Expression	Moc05g12630
Synteny	Moc05g12630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTCGAGGCCTCTGGTATAAATGGTCGGGGGTCGATGCGAGGAGTCTTTCGAAAGGAGAACTATTGGGGCCTTGGGTATAAATGGTCAAGGGCCAATAGATTGTAAGACATCGAGGCCTCGGGTATAAATGGTCGAGGGTCGATGCAGAGTTCAAGGCCTCGGGTATAAATGGTCGAGGGCCGATGCTGCAGGGTCGGGGCTCTGGGTATAAATGGTCAGGGGCCGACTCTGCTCGAAGGAGTTAACTGTGGAAGGCTAAAGAAGCTGATATAAGCGTAGAGGTACTTGAGATGTTAGGGAGACTAGAGGTTGGTAGTTAATGTGTTACTGGTTGTGGTTGTCACCGAAGTTTATAGAATGTGTCTATGTTTGAATGCATAATGTGATGAAAAGCATGACTGTGAATGTTTCATGATTTGGTTGAGCATGATGTGTGTGTGTTGATTCTTTAATAAGCATGACACGTTGTTCCTTGATAAGTATGCTGTTTGTGCGTGACCCTTCAAATAAGGACTGCTTACTGAGTACTGTGGTTGTACTCATCCCCCTTTTTCCCTCCAGTTTGCAGGTATCGAGCTAGCCCTTGGGATGGTGATGGCGAGGAGGAGGCTTGATCGGAAAGACCATTAGCTATGTTGTGTGCAATTAATTTATTTTAGTTAGGATAGTTGTGGTCATTTAATGTTGTAGTTGAGTTGGTAGTGGTTGGTTTTGTTTAGTTTTATTGTCTAAAGGATGTCGTAAGATTGCCGGTTCATTGTTCTTTTAGATCATTAATTTTGTTAGCCTCTTGAACTACGGGATTGTAATCCACTTAGGATATTTATGAATACATTTGTTAAAGTTGATCGTACTTGAATTAGCTTTTGCTTCATTGCCATTCGAGATGTTAATATTCATTTAGGGGATGGTTTATAGTTAGTAAGGTTTCCTTGAAGGGTTTGGTTAATGTGAAGTCGGTATTAAATGGTTTATCTGTATAGGATGTGAGTTTCTCTTAAAACGTTAGTGTTGTTGTTCTAATTGTTCAAGCTCTCGTAGCACAGCAGAAGCGTGGTAGTTTTATTGCTTAGTGTTGTTGTGAAGAAAATTCTCTTGTTTATGTGAAAATTTTAGGTAGGCTTAGTAACGGTCCCTGTTTGGAAATGGTGAAATTCCTGGGGCGTTACAAAAACGAAATTTGTAGTCGTTGTAGTCGATTACTTCACCAAGTGGGCCGAGGCTGAACCCCTCACCACGATCACCGAGCGAAACATAACGACTTCCGTATACAAATCCATCATCTCTCGGTTTAATATTTCGAATATCATCATCTCTGACAATGCAAAACAATTCGACAATAAAAACTTAAAGAGGTTCTGATCGAACCTAGACATCAAACACCTCAGCTTGACCCCCATACACCCACAGACCAACGAACAGGTAGCAAAGCGCTTCTACCGAGTTCCCCAACAGCAGCTTAGTAGCTCAACTCAAATCTTGGAGCGAACTACTCATTGTTGTGTTGCCCCAATCTAAGGAAGCGCATTTGGTGAGGAGCATTGTTTTGAGGGAGGGAAAGCTGTGAACAAGATCATCAAAATAATCTTAAAGGTTAGCTCGAGAAGCTCAAGGGCTAGTGGACAGAGGAACTTCCGGGCATCTTATGGACTTAAAGAGTTACCCCAAGGACTTCGACGGGTGAAACCTCCTACTCGCTGTCGTTCGTGATGGAGGCTGTAGTACCCGTGGAAATGGAAGTCCCCCCATTGAGAATTGTAGCCTTTGATTAGGGCCTCAATGAGGAAGGAATTCTGAGCTCCCTGGACCTCATTGAAGAACACAGGGAAATCGCTCGCCTGCGAGTGGCTAGACACCAGAATCGAGTGGCCAGGTACTACAACTCACGAGTGAAGCAGCGTAAATTCGCAATCGGAGCATTGGTGCTGAGAAAGCTGATGCTGAACAAGAAAGAATGCGCGAATGGGAACTCGGCCTGA

mRNA sequence

ATGAGTGTCGAGGCCTCTGGTATAAATGGTCGGGGGTCGATGCGAGGAGTCTTTCGAAAGGAGAACTATTGGGGCCTTGGGTATAAATGGTCAAGGGCCAATAGATTCGCATTTGGTGAGGAGCATTGTTTTGAGGGAGGGAAAGCTGTGAACAAGATCATCAAAATAATCTTAAAGGTTAGCTCGAGAAGCTCAAGGGCTAGTGGACAGAGGAACTTCCGGGCATCTTATGGACTTAAAGAGTTACCCCAAGGACTTCGACGGGGCCTCAATGAGGAAGGAATTCTGAGCTCCCTGGACCTCATTGAAGAACACAGGGAAATCGCTCGCCTGCGAGTGGCTAGACACCAGAATCGAGTGGCCAGGTACTACAACTCACGAGTGAAGCAGCGTAAATTCGCAATCGGAGCATTGGTGCTGAGAAAGCTGATGCTGAACAAGAAAGAATGCGCGAATGGGAACTCGGCCTGA

Coding sequence (CDS)

ATGAGTGTCGAGGCCTCTGGTATAAATGGTCGGGGGTCGATGCGAGGAGTCTTTCGAAAGGAGAACTATTGGGGCCTTGGGTATAAATGGTCAAGGGCCAATAGATTCGCATTTGGTGAGGAGCATTGTTTTGAGGGAGGGAAAGCTGTGAACAAGATCATCAAAATAATCTTAAAGGTTAGCTCGAGAAGCTCAAGGGCTAGTGGACAGAGGAACTTCCGGGCATCTTATGGACTTAAAGAGTTACCCCAAGGACTTCGACGGGGCCTCAATGAGGAAGGAATTCTGAGCTCCCTGGACCTCATTGAAGAACACAGGGAAATCGCTCGCCTGCGAGTGGCTAGACACCAGAATCGAGTGGCCAGGTACTACAACTCACGAGTGAAGCAGCGTAAATTCGCAATCGGAGCATTGGTGCTGAGAAAGCTGATGCTGAACAAGAAAGAATGCGCGAATGGGAACTCGGCCTGA

Protein sequence

MSVEASGINGRGSMRGVFRKENYWGLGYKWSRANRFAFGEEHCFEGGKAVNKIIKIILKVSSRSSRASGQRNFRASYGLKELPQGLRRGLNEEGILSSLDLIEEHREIARLRVARHQNRVARYYNSRVKQRKFAIGALVLRKLMLNKKECANGNSA

Homology

[Close]

BLAST of Moc05g12630 vs. NCBI nr
Match: XP_022156561.1 (uncharacterized protein LOC111023436 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-10
Identity = 53/137 (38.69%), Postives = 72/137 (52.55%), Query Frame = 0


Query: 48  KAVNKIIKIILKV--------------------SSRSSRASGQRNFRASYGLKEL----- 107
           +AVNKIIK  LK                      + S  ++ +  F  S+G K +     
Sbjct: 45  EAVNKIIKRTLKTRLEKLKGLWAEELPNALWAYRTTSCTSTKETPFSLSFGSKAMVPVEI 104

Query: 108 ------PQGLRRGLNEEGILSSLDLIEEHREIARLRVARHQNRVARYYNSRVKQRKFAIG 154
                  + +R   N E +  SLDL+EEHRE ARLR A ++NR+ARYYNS+VK+R F  G
Sbjct: 105 GLPSPRVEQIRLPNNNESVQLSLDLLEEHRETARLRTAEYKNRIARYYNSKVKKRDFKEG 164

[Close]

BLAST of Moc05g12630 vs. NCBI nr
Match: XP_022158579.1 (uncharacterized protein LOC111025033 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 7.8e-10
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 91  NEEGILSSLDLIEEHREIARLRVARHQNRVARYYNSRVKQRKFAIGALVLRKLMLNKKEC 150
           N E +  +LDL+EEHRE ARLR A ++NR+ARYYNS+VK+R F  G LVLRK+M N K+ 
Sbjct: 780 NNESVKLNLDLLEEHRETARLRTAEYKNRIARYYNSKVKKRDFKEGDLVLRKVMPNTKDS 839

Query: 151 ANG 154
            +G
Sbjct: 840 TSG 842

[Close]

BLAST of Moc05g12630 vs. NCBI nr
Match: XP_022155342.1 (uncharacterized protein LOC111022476 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-09
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 91  NEEGILSSLDLIEEHREIARLRVARHQNRVARYYNSRVKQRKFAIGALVLRKLMLNKKE 150
           N E +  +L+L+EEHRE ARLR A ++NR+AR+YNS+VK+R F  G LVLRK+MLN K+
Sbjct: 615 NNESVKLNLNLLEEHRETARLRTAEYKNRIARHYNSKVKKRDFKEGDLVLRKIMLNTKD 673

[Close]

BLAST of Moc05g12630 vs. NCBI nr
Match: TQE00991.1 (hypothetical protein C1H46_013531 [Malus baccata])

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-07
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 0


Query: 47  GKAVNKIIKIILKVSSRSSRASGQRNFRASYGLKE-------LPQ----GLRRGLNEEGI 106
           GK   ++  ++    +   + +G+  F  +YG +        LP      +  G N++ +
Sbjct: 53  GKWHEELPNVLWAYRTTKRKPTGESPFSLAYGTEAVIPTEVGLPTVRTIVVENGENDQQL 112

Query: 107 LSSLDLIEEHREIARLRVARHQNRVARYYNSRVKQRKFAIGALVLRKLMLNKKECANG 154
             +LDL+EE REIA LR+A +QN+VA Y+N RVK ++F +G  VLRK+M N K+   G
Sbjct: 113 AHNLDLVEEQREIAALRLANYQNQVATYFNKRVKSKRFKVGEWVLRKVMENTKDLNAG 170

[Close]

BLAST of Moc05g12630 vs. NCBI nr
Match: KAG1359359.1 (hypothetical protein COCNU_08G008050 [Cocos nucifera])

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-07
Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 85   GLRRGLNEEGILSSLDLIEEHREIARLRVARHQNRVARYYNSRVKQRKFAIGALVLRKLM 144
            G    LN + + ++LDL+EE RE+AR+R+A +Q +VARYYNSRVK + F +G LVLR+  
Sbjct: 1215 GFNEQLNPQDLRANLDLLEEKREVARIRMATYQRKVARYYNSRVKNKAFRVGDLVLRRAA 1274

Query: 145  LNKKE 150
            +++ +
Sbjct: 1275 VSRPQ 1279

[Close]

BLAST of Moc05g12630 vs. ExPASy TrEMBL
Match: A0A6J1DVB6 (uncharacterized protein LOC111023436 OS=Momordica charantia OX=3673 GN=LOC111023436 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.6e-11
Identity = 53/137 (38.69%), Postives = 72/137 (52.55%), Query Frame = 0


Query: 48  KAVNKIIKIILKV--------------------SSRSSRASGQRNFRASYGLKEL----- 107
           +AVNKIIK  LK                      + S  ++ +  F  S+G K +     
Sbjct: 45  EAVNKIIKRTLKTRLEKLKGLWAEELPNALWAYRTTSCTSTKETPFSLSFGSKAMVPVEI 104

Query: 108 ------PQGLRRGLNEEGILSSLDLIEEHREIARLRVARHQNRVARYYNSRVKQRKFAIG 154
                  + +R   N E +  SLDL+EEHRE ARLR A ++NR+ARYYNS+VK+R F  G
Sbjct: 105 GLPSPRVEQIRLPNNNESVQLSLDLLEEHRETARLRTAEYKNRIARYYNSKVKKRDFKEG 164

[Close]

BLAST of Moc05g12630 vs. ExPASy TrEMBL
Match: A0A6J1DZU0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025033 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-10
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 91  NEEGILSSLDLIEEHREIARLRVARHQNRVARYYNSRVKQRKFAIGALVLRKLMLNKKEC 150
           N E +  +LDL+EEHRE ARLR A ++NR+ARYYNS+VK+R F  G LVLRK+M N K+ 
Sbjct: 780 NNESVKLNLDLLEEHRETARLRTAEYKNRIARYYNSKVKKRDFKEGDLVLRKVMPNTKDS 839

Query: 151 ANG 154
            +G
Sbjct: 840 TSG 842

[Close]

BLAST of Moc05g12630 vs. ExPASy TrEMBL
Match: A0A6J1DP30 (uncharacterized protein LOC111022476 OS=Momordica charantia OX=3673 GN=LOC111022476 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-09
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 91  NEEGILSSLDLIEEHREIARLRVARHQNRVARYYNSRVKQRKFAIGALVLRKLMLNKKE 150
           N E +  +L+L+EEHRE ARLR A ++NR+AR+YNS+VK+R F  G LVLRK+MLN K+
Sbjct: 615 NNESVKLNLNLLEEHRETARLRTAEYKNRIARHYNSKVKKRDFKEGDLVLRKIMLNTKD 673

[Close]

BLAST of Moc05g12630 vs. ExPASy TrEMBL
Match: A0A540MQC9 (Integrase catalytic domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_013531 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.9e-08
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 0


Query: 47  GKAVNKIIKIILKVSSRSSRASGQRNFRASYGLKE-------LPQ----GLRRGLNEEGI 106
           GK   ++  ++    +   + +G+  F  +YG +        LP      +  G N++ +
Sbjct: 53  GKWHEELPNVLWAYRTTKRKPTGESPFSLAYGTEAVIPTEVGLPTVRTIVVENGENDQQL 112

Query: 107 LSSLDLIEEHREIARLRVARHQNRVARYYNSRVKQRKFAIGALVLRKLMLNKKECANG 154
             +LDL+EE REIA LR+A +QN+VA Y+N RVK ++F +G  VLRK+M N K+   G
Sbjct: 113 AHNLDLVEEQREIAALRLANYQNQVATYFNKRVKSKRFKVGEWVLRKVMENTKDLNAG 170

[Close]

BLAST of Moc05g12630 vs. ExPASy TrEMBL
Match: A0A2N9F200 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12889 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 53  IIKIILKVSSRSSRASGQRNFRASYGLKE------LPQGLRRGLNEEGILSSLDLIEEHR 112
           ++K+I      + +  GQ+NFRA +G  E               NEE +  +LDLI+E R
Sbjct: 877 LLKLIKTRLEGAKKDYGQKNFRAYFGPTEQQNDDISTSAYDEQKNEEQLRLNLDLIDEVR 936

Query: 113 EIARLRVARHQNRVARYYNSRVKQRKFAIGALVLRKLMLNKKECANG 154
           E A  R+ R+Q ++AR+YNSRVK R+ +IG LVLRK+ L  +  + G
Sbjct: 937 ETAETRMKRYQEKMARHYNSRVKPRQLSIGDLVLRKVTLATRNPSEG 983

The following BLAST results are available for this feature:

BLAST of Moc05g12630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156561.1	1.6e-10	38.69	uncharacterized protein LOC111023436 [Momordica charantia]	[more]
XP_022158579.1	7.8e-10	58.73	uncharacterized protein LOC111025033 [Momordica charantia]	[more]
XP_022155342.1	6.6e-09	59.32	uncharacterized protein LOC111022476 [Momordica charantia]	[more]
TQE00991.1	1.6e-07	34.75	hypothetical protein C1H46_013531 [Malus baccata]	[more]
KAG1359359.1	3.6e-07	47.69	hypothetical protein COCNU_08G008050 [Cocos nucifera]	[more]

BLAST of Moc05g12630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g12630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVB6	7.6e-11	38.69	uncharacterized protein LOC111023436 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DZU0	3.8e-10	58.73	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025033 PE=4 SV=1	[more]
A0A6J1DP30	3.2e-09	59.32	uncharacterized protein LOC111022476 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A540MQC9	7.9e-08	34.75	Integrase catalytic domain-containing protein OS=Malus baccata OX=106549 GN=C1H4...	[more]
A0A2N9F200	1.0e-07	39.25	Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12889 PE=4 SV=1	[more]

BLAST of Moc05g12630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g12630.1	Moc05g12630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding