Moc05g12590 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g12590
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr5: 9733144 .. 9737253 (+)
RNA-Seq ExpressionMoc05g12590
SyntenyMoc05g12590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAGGGTCGATACAAGGAGTCCTTTGGAGGGAAGACTACTGGGACCTTGGGTATAAATGGTCAAGGGCCAATAGATGGTGAAGTCATCGGGGCCTCGGGTATAAATGGTCGAGGGCCGATGCTACAGGGTCGGGGCTCTGGGTATAAATGGTCAGGGGCCGACTCTACTCGAAGGAGATAGCTGTGGAAGAGTAGGATAACTGTGTTACGCGTAGAGGTACTTGTGATGTTGGGGAGACTAGGGATTGGTTGTTAACGTGCCTCCTGGCTGTGGTTGTCACTAAAATGTTATGAAATGTGTTTATGTTTGAATGCATAGTGTATTGAAAGGCATGACTACGAATGTTTCTAGATATGGTTGAGCATGATGTGTGTCTGTGTTGGTGAGTGCTACTTACGGAGTATATTTTATATACTCACCCCCCTTTACAATGATTGTTTCAGGTGAAGAACTCGTGGGCGACCATGGTGATGGGACGGAGGAGACATGACGAGCGAGGACCATAGGCTGCTTAGTCACTCTTGCTTAGCTTAAGTGATTAGTTAAGACATTATGTTAGGGTCAATAGACTATTTGTTCGTATTTGAATAATTGGGATATTTCCCCTTGTTGTTAGTTTCATTTCGGGATAGGTGCCTATTTTAGTTTTATTCCATGCTTTGAGTTTTGCCTAGTTTGAATAATAAACTTGTCTCGTGAGGTGGTCCACGAATGTGTTTGAAGGATATACTATGAGATTGATTTGTCGTTAAATTGATGAGAATTGGAATTTGATTTTATAAATTTGTTGTATAGGGAGCTGGCATGACGTATTTGGGGGTTAAATTTAATTAGTTGGGTAGTTAACGTGACCTAGAATTGTGTGGGAAATTTTGGGTCGTTACAGAGGAAATGTCCAAGACAACTGCAAACACACTCGTGGCTCAACAACTAGAAAAGGGGAAACAAATTTGGGGCGAACCTGCCGAAGAGATAGAAAATCTTCCAATGATATCTGGTGAGCAGTATGTCCGAATAGAAATGTAGCTGCCAGACGAAACTACAAAAAATTTGCTGGCCTTTTTAAAACACAATTTGAACGTCTTTGCATGGTCATAGAGCGACATGCTCGGCATAGACTAAGACGTAATAGTGCATTAACTCAACATAAACCCTGATTTTAAGCTAGTGGTGAAAATGTGATGACCTTTAAATATTGAGCACAACCAGACAATTGTAGCAGAAGTAGAAAACCTCCTCGGGCTGGATTCATACGGTTGGTACACTACTCAGAGTGGATTTCCATTGTTGTGCTAGTAAAAAAAACTCAGCAAGAAGTGGTGCATGTGCATTGACTTCACTGATCTCAATAAGGCGTGCCTAAAGGACAGCTTTCCGCTACCACAAATAGATTAGTTAGTAGATGCCATGATAGAGCACAAAATTCTCAATTTTATGGATGCTTACTCTAGCTATAACTAAATAAGAATGTATGAACCAGACTAAGAAAAACCTCATTTGTTACAAAGCAAGGGTTATACTATTACCAGGTCAAGCTCTTCGGTCTCAAGAATGCTAGAGACACGTATCAAAGAATGGTCAACAAGATGTTTGCCCCCTTAATTGGGAAAATCATGGAGGTGTATGTCGACAATATGTTGGTAACCAGCAAATATGCAACCCGACATGTAAAGGATCTTGCTGAAGCATACGAGGTTCTTCGACGGTATCAAATGAAGCTAAATCCCAATAAGTGTACCTTTGGGGTCTCTTCAGGAAAATTCTTAGGATATATGGTTCACTGATAACTCTCCATGAGAGAATGTTTTACGGTATAATTTGGTTAATATATGTGTAAAAATGTGAGGGTCCTTGTTAAAACAACTGGAAAAATAATAGAAATTAGCAAGCTAGAGTCCTGAGCGGTTAGAAATCTCAATTTATTTAGTTTGAACGATGTTGTACTTAATTTTGGATATTTTGAATAGGAATTGTAGAATTTGGAATGGATAAGCTGAGTGCTTCAAAGTTTGCTGAAGGTGTTGCTGGAACCTGAATGAAGAAGCTTCTATGCTGGAGCCTATTGTTTCCGGATGCTCTAGAATGTGTGAGTGTGCAGTAACTCGTCGCTTCAGTTTTTACCGTGTCCGTACAAAGAATCAAATTTAGGACATCGATTTAAGACAACATTCCTTTTCCCATTTTCATCGAAGAAGGAGCTGGAGAGAGTGGCTGACTTCCTTTTGCGTCACCACTGTGTTGGAAGAGTTTTCACCATTTTTCTGCTGTCTTCTTTCTCGATGGAACACATTTCTTCTTCACCGACTGTTTTCTTTTCTTTTATTATGAACTAAACCCCGCCTTCGAGGGGGATGATCTTGCTGTTGCTTGTTACTAACTATGTTTGAGTAGCCCTTAATGCTAATTTAGTATATGTGTTTTTATTTTCTCATCTTACTGATTTTGTTTGGCCAACATTATTAGTTTGTTAGCTTCCAAGTGCACAATACTGTTTTTATTGCTTGCTTCAATTATAACGGAAGTTGGATTTAAGCATGTGTGGGGAGAACCATGTCTGTTTGGGCAATCAATATTATAGGTTTGCTAAAGCATAGTTGGTAATAAGTGAAAGCATTAGAGCGAATCCCCTTCGGCTTACCTTCATATCATCTCATATTCGCATTTTGTTTGTTACTTGAGTTGGATGCCCCAACATATTACCACAAATATCTATGTGTTTGTTCATTTACTATCTTGTCGATTTATTTTACAGCACTCACAACATTTTAAACAAACCTTTTTTATTTTGCTTTTTGGTACTCTGATTTGCTAACTCAAGGTAAAGTTGCAATCCCTTCGGAAACGATCTTGTTTTGTAGTACAATCAATTATTTCTGTGTACACTTGCATCGATTTTCACCTAATTGTGAGTGAGCGAACACTCACCAACAAGGGATCGAGGCTAATCTTGACAAAATTGGGCCATCATTGAGAAGACCTTGCCCACGACCGCTCAGCAAGTACGGTGGTTGGGTGGACGAGTAGCAACCCTCAACCATTTCATTTCACGAGCAACAGATAAGTGTATACCCTTCTTCTAATTATTGACTAAATAAAGTCATTCGAATGGACATAACAGTGTGAGGATGCTTTTTTCCAACTTAAAAATTACCTCGGTAAGGCTCTGATACTCGTAAAGCCTAACCTAGAGGATGTGTTATCCTATGCCTATATGTGGCAGCATCGAATATAGCCATTAGCTCGACACTGGTCAAGGAAGAGCAAAATAGCCAAAGGTTAGTGTATTACACTAGAAAGGCTTTAGTGGACGCCAAAACTCGACATCCTCCAATTGATAAAGTCGTTTTGGTTCTATTGACCGCCATCAACAACCTATGACCATATTTCCAAGCTCACACCATCACCATTTACACAGACCTCCCTTTGAGGCTGGTCTTACAGAAACCAGATGTGTCAAGTCGGCTTATGAAATGGGAGATGGAACCCGGTGAATATGATATACACTACAAGTCACGCACGGCCATAAAGGGACAAGTTGTGGCTGACTTTATTGGTGAATTAACTAATGCGGCATAAATGGTAATAGGATCAGACCTATCTTTAGAGTTATGGAGAACTTTTGTGGATGATTCTGCCAACAATCGCGGATGTGGAGCAAGGCTAGTAGTTATTTCCCCAATCAGAACCTGCATAGAAGTAGCCGTGCGATTTGGGTTCAAAACCTTGAACAATGATGCTAAGTATGAAACCTTACTTGCATGATTAAAAGCCGCTCAAGAGCAAGGCGTGACCCGGCTATGCAGCCAAAGTGACTTAATATTGGTGGTAAACCAAGATAAGGGTGATTACAAGGTAAAGGGAACCAGACTAGCCGAATACAAGACATTGGTAAAAAATATGTTCATGTCCTTTGTAGAATGGGAAATCCGACAAACACCACGATCTGAAAACAAAAATGCTGATGTATTGGCATAACTTACAATCGTTTATAGCACGGATGAAGAACAAGAAGTTGCTGTGAGATTTATCGTCCAGCCCAGTATAGGTGTAACGCCCCAGGAATTTCACCATTTCCAAACAGGGACCGTTACTAAGACTACCTAA

mRNA sequence

ATGGCCGAGGGTCGATACAAGGAGTCCTTTGGAGGGAAGACTACTGGGACCTTGGGTATAAATGGTCAAGGGCCAATAGATGGTGAAGTCATCGGGGCCTCGGGTATAAATGGTCGAGGGCCGATGCTACAGGGTCGGGGCTCTGGGTATAAATGGTGTTGCTGGAACCTGAATGAAGAAGCTTCTATGCTGGAGCCTATTGTTTCCGGATGCTCTAGAATGTACCTCCCTTTGAGGCTGGTCTTACAGAAACCAGATGTGTCAAGTCGGCTTATGAAATGGGAGATGGAACCCGGATCAGACCTATCTTTAGAGTTATGGAGAACTTTTGTGGATGATTCTGCCAACAATCGCGGATGTGGAGCAAGGCTAGTAGTTATTTCCCCAATCAGAACCTGCATAGAAGTAGCCGTGCGATTTGGGTTCAAAACCTTGAACAATGATGCTAACACGGATGAAGAACAAGAAGTTGCTGTGAGATTTATCGTCCAGCCCAGTATAGGTGTAACGCCCCAGGAATTTCACCATTTCCAAACAGGGACCGTTACTAAGACTACCTAA

Coding sequence (CDS)

ATGGCCGAGGGTCGATACAAGGAGTCCTTTGGAGGGAAGACTACTGGGACCTTGGGTATAAATGGTCAAGGGCCAATAGATGGTGAAGTCATCGGGGCCTCGGGTATAAATGGTCGAGGGCCGATGCTACAGGGTCGGGGCTCTGGGTATAAATGGTGTTGCTGGAACCTGAATGAAGAAGCTTCTATGCTGGAGCCTATTGTTTCCGGATGCTCTAGAATGTACCTCCCTTTGAGGCTGGTCTTACAGAAACCAGATGTGTCAAGTCGGCTTATGAAATGGGAGATGGAACCCGGATCAGACCTATCTTTAGAGTTATGGAGAACTTTTGTGGATGATTCTGCCAACAATCGCGGATGTGGAGCAAGGCTAGTAGTTATTTCCCCAATCAGAACCTGCATAGAAGTAGCCGTGCGATTTGGGTTCAAAACCTTGAACAATGATGCTAACACGGATGAAGAACAAGAAGTTGCTGTGAGATTTATCGTCCAGCCCAGTATAGGTGTAACGCCCCAGGAATTTCACCATTTCCAAACAGGGACCGTTACTAAGACTACCTAA

Protein sequence

MAEGRYKESFGGKTTGTLGINGQGPIDGEVIGASGINGRGPMLQGRGSGYKWCCWNLNEEASMLEPIVSGCSRMYLPLRLVLQKPDVSSRLMKWEMEPGSDLSLELWRTFVDDSANNRGCGARLVVISPIRTCIEVAVRFGFKTLNNDANTDEEQEVAVRFIVQPSIGVTPQEFHHFQTGTVTKTT
Homology
[Close]
BLAST of Moc05g12590 vs. NCBI nr
Match: XP_022142783.1 (uncharacterized protein LOC111012821 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 4.2e-10
Identity = 44/116 (37.93%), Postives = 58/116 (50.00%), Query Frame = 0 

Query: 76  LPLRLVLQKPDVSSRLMKWEMEPG--------------------------------SDLS 135
           LPL+ VLQKP+ S RLMKW +E G                                 D+ 
Sbjct: 173 LPLKQVLQKPETSGRLMKWAVELGEYDIRYKPRTAVKGQAIADFIADLTPGLIPQSEDIP 232

Query: 136 L----------ELWRTFVDDSANNRGCGARLVVISPIRTCIEVAVRFGFKTLNNDA 150
           L          ELW  +VD S+N +GCGA +V++SP + C+EVA+RFGFKT N +A
Sbjct: 233 LGTHDGHSADPELWTIYVDGSSNGQGCGAGVVLLSPSKECMEVALRFGFKTSNKEA 288

[Close]
BLAST of Moc05g12590 vs. NCBI nr
Match: GFY89059.1 (hypothetical protein Acr_06g0009990 [Actinidia rufa])

HSP 1 Score: 74.7 bits (182), Expect = 9.3e-10
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 0 

Query: 77   PLRLVLQKPDVSSRLMKWEM-------------EPGSDLSLELWRTFVDDSANNRGCGAR 136
            PL+ +LQ+PD S RL+KW +             EP S+  L  W  FVD S+N  GCGA 
Sbjct: 932  PLKQILQRPDTSGRLLKWSIELKIAPPETEIPEEPTSEKVLAHWILFVDGSSNQHGCGAG 991

Query: 137  LVVISPIRTCIEVAVRFGFKTLNNDA 150
            LV+ +P+   +E A+R GFK  NN+A
Sbjct: 992  LVIQTPLGEQMEYAIRIGFKATNNEA 1017

[Close]
BLAST of Moc05g12590 vs. NCBI nr
Match: XP_034213078.1 (uncharacterized protein LOC117625661 [Prunus dulcis])

HSP 1 Score: 65.1 bits (157), Expect = 7.4e-07
Identity = 41/126 (32.54%), Postives = 53/126 (42.06%), Query Frame = 0 

Query: 77  PLRLVLQKPDVSSRLMKWEMEPGS------------------------------------ 136
           PLR VLQKP+ S RL+KW +E G                                     
Sbjct: 222 PLRQVLQKPETSGRLVKWAIELGEFDIHYKPRPAMRGQAVADFLSEFTEPQASAATQLIT 281

Query: 137 -----------------DLSLELWRTFVDDSANNRGCGARLVVISPIRTCIEVAVRFGFK 150
                            DL+  LW  FVD S+N +GCGA LV+ISP +  +E A+RF F+
Sbjct: 282 EPNPSPSQGQTPTENTLDLTQPLWTLFVDGSSNAQGCGAGLVLISPDKVALEYALRFNFQ 341

[Close]
BLAST of Moc05g12590 vs. NCBI nr
Match: XP_022154103.1 (uncharacterized protein LOC111021439 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 7.4e-07
Identity = 40/110 (36.36%), Postives = 52/110 (47.27%), Query Frame = 0 

Query: 77  PLRLVLQKPDVSSRLMKWEME---------PGSDLSL----------------------- 136
           PLR VLQKPD S RL+KW +E         P + +                         
Sbjct: 41  PLRQVLQKPDTSGRLVKWAVELSEYDIHYKPRTAMKRQAVADFIAELTPTEPQVYSIDRQ 100

Query: 137 -----ELWRTFVDDSANNRGCGARLVVISPIRTCIEVAVRFGFKTLNNDA 150
                +LW  +VD S+N RGCGARL++ISP +   E A+RF F   NN+A
Sbjct: 101 VVEEEQLWTLYVDGSSNFRGCGARLLLISPDKERFEYALRFNFHASNNEA 150

[Close]
BLAST of Moc05g12590 vs. NCBI nr
Match: XP_022894051.1 (uncharacterized protein LOC111408536 [Olea europaea var. sylvestris])

HSP 1 Score: 65.1 bits (157), Expect = 7.4e-07
Identity = 37/122 (30.33%), Postives = 60/122 (49.18%), Query Frame = 0 

Query: 63  MLEPIVSGCSRMYLPLRLVLQKPDVSSRLMKWEME------------------------- 122
           +++ +  G   +Y PL+ +LQKPDVS RL++WE+E                         
Sbjct: 62  LVKEVNRGQQPIYYPLKNILQKPDVSGRLLRWEIELKEFDIEFKPRPSIKAQAIADFIAE 121

Query: 123 ---------PGSDLSLELWRTFVDDSANNRGCGARLVVISP-IRTCIEVAVRFGFKTLNN 150
                      S  S+ +W  FVD ++N+ G GA +++ISP +   I+ A+RF F+  NN
Sbjct: 122 LTPRPWGPDSSSSSSISMWEIFVDGASNSSGLGAGVIIISPNMLINIQCALRFEFEATNN 181

[Close]
BLAST of Moc05g12590 vs. ExPASy TrEMBL
Match: A0A6J1CP54 (uncharacterized protein LOC111012821 OS=Momordica charantia OX=3673 GN=LOC111012821 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 44/116 (37.93%), Postives = 58/116 (50.00%), Query Frame = 0 

Query: 76  LPLRLVLQKPDVSSRLMKWEMEPG--------------------------------SDLS 135
           LPL+ VLQKP+ S RLMKW +E G                                 D+ 
Sbjct: 173 LPLKQVLQKPETSGRLMKWAVELGEYDIRYKPRTAVKGQAIADFIADLTPGLIPQSEDIP 232

Query: 136 L----------ELWRTFVDDSANNRGCGARLVVISPIRTCIEVAVRFGFKTLNNDA 150
           L          ELW  +VD S+N +GCGA +V++SP + C+EVA+RFGFKT N +A
Sbjct: 233 LGTHDGHSADPELWTIYVDGSSNGQGCGAGVVLLSPSKECMEVALRFGFKTSNKEA 288

[Close]
BLAST of Moc05g12590 vs. ExPASy TrEMBL
Match: A0A7J0EST1 (Ribonuclease H OS=Actinidia rufa OX=165716 GN=Acr_06g0009990 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.5e-10
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 0 

Query: 77   PLRLVLQKPDVSSRLMKWEM-------------EPGSDLSLELWRTFVDDSANNRGCGAR 136
            PL+ +LQ+PD S RL+KW +             EP S+  L  W  FVD S+N  GCGA 
Sbjct: 932  PLKQILQRPDTSGRLLKWSIELKIAPPETEIPEEPTSEKVLAHWILFVDGSSNQHGCGAG 991

Query: 137  LVVISPIRTCIEVAVRFGFKTLNNDA 150
            LV+ +P+   +E A+R GFK  NN+A
Sbjct: 992  LVIQTPLGEQMEYAIRIGFKATNNEA 1017

[Close]
BLAST of Moc05g12590 vs. ExPASy TrEMBL
Match: A0A2N9G140 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24369 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.2e-08
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 76  LPLRLVLQKPDVSSRLMKWEMEPGSDLSLELWRTFVDDSANNRGCGARLVVISPIRTCIE 135
           LPL+++LQ+ D + R+ +W    G DL  E W  FVD ++N++G GA +V+ISP    +E
Sbjct: 814 LPLKMLLQRSDFTRRITRW----GLDLDAEKWELFVDGASNSKGSGAGIVLISPEGLVLE 873

Query: 136 VAVRFGFKTLNNDA 150
            AV+  F  LNN+A
Sbjct: 874 QAVQLRFSVLNNEA 883

[Close]
BLAST of Moc05g12590 vs. ExPASy TrEMBL
Match: A0A5E4G9U1 (PREDICTED: rve domain-containing (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B023606 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-07
Identity = 41/126 (32.54%), Postives = 53/126 (42.06%), Query Frame = 0 

Query: 77  PLRLVLQKPDVSSRLMKWEMEPGS------------------------------------ 136
           PLR VLQKP+ S RL+KW +E G                                     
Sbjct: 31  PLRQVLQKPETSGRLVKWAIELGEFDIHYKPRPAMRGQAVADFLSEFTEPQASAATQLIT 90

Query: 137 -----------------DLSLELWRTFVDDSANNRGCGARLVVISPIRTCIEVAVRFGFK 150
                            DL+  LW  FVD S+N +GCGA LV+ISP +  +E A+RF F+
Sbjct: 91  EPNPSPSQGQTPTENTLDLTQPLWTLFVDGSSNAQGCGAGLVLISPDKVALEYALRFNFQ 150

[Close]
BLAST of Moc05g12590 vs. ExPASy TrEMBL
Match: A0A6J1DJC7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111021439 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-07
Identity = 40/110 (36.36%), Postives = 52/110 (47.27%), Query Frame = 0 

Query: 77  PLRLVLQKPDVSSRLMKWEME---------PGSDLSL----------------------- 136
           PLR VLQKPD S RL+KW +E         P + +                         
Sbjct: 41  PLRQVLQKPDTSGRLVKWAVELSEYDIHYKPRTAMKRQAVADFIAELTPTEPQVYSIDRQ 100

Query: 137 -----ELWRTFVDDSANNRGCGARLVVISPIRTCIEVAVRFGFKTLNNDA 150
                +LW  +VD S+N RGCGARL++ISP +   E A+RF F   NN+A
Sbjct: 101 VVEEEQLWTLYVDGSSNFRGCGARLLLISPDKERFEYALRFNFHASNNEA 150

The following BLAST results are available for this feature:
BLAST of Moc05g12590 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022142783.14.2e-1037.93uncharacterized protein LOC111012821 [Momordica charantia][more]
GFY89059.19.3e-1043.02hypothetical protein Acr_06g0009990 [Actinidia rufa][more]
XP_034213078.17.4e-0732.54uncharacterized protein LOC117625661 [Prunus dulcis][more]
XP_022154103.17.4e-0736.36uncharacterized protein LOC111021439 [Momordica charantia][more]
XP_022894051.17.4e-0730.33uncharacterized protein LOC111408536 [Olea europaea var. sylvestris][more]
BLAST of Moc05g12590 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc05g12590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CP542.0e-1037.93uncharacterized protein LOC111012821 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A7J0EST14.5e-1043.02Ribonuclease H OS=Actinidia rufa OX=165716 GN=Acr_06g0009990 PE=4 SV=1[more]
A0A2N9G1407.2e-0843.24Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24369 PE=4 SV=1[more]
A0A5E4G9U13.6e-0732.54PREDICTED: rve domain-containing (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2... [more]
A0A6J1DJC73.6e-0736.36Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111021439 PE=4 SV=1[more]
BLAST of Moc05g12590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g12590.1Moc05g12590.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process