Moc05g12570 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g12570
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111020110
Locationchr5: 9727168 .. 9727719 (+)
RNA-Seq ExpressionMoc05g12570
SyntenyMoc05g12570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTCTTCTCAACATACTTCACTTCCTACCTCTTCTACTCAAGCTCCAAATGCCACAAGCATTCCCTTTCCACCATTGGAGAACTTCCAACACCACATGGTTTCAGATTCTAGGCTAGCTGCTGTTAGGGGAGGAAACCCGCTTCAAACATTTGAATGTCCTCCATGCCAAGCTTCTACACAACATCCTATAATGAGCCCACATGGTTATGTTAATTTTCAGCAACTACCCACCCTTAATATACCTCAAAACAGTGAGTTTAGGGCTGAAAATCCTCAACAACTTCTTCCAATGATCAATCCGGGTATGTACCAACCGTTTATGTTTAACCCGGTTCCTTCCTATCATTTTCCCTTGTCCCAAATGCAAATTCCAGCTAGTGTTCATCCTTATGGAATGCCAAACCCATCTACTCTATTTCCTAGCCTTCCACCTTATTATGGAATGGGTCATTGGGTACTTCCAACCAATTATGGGATGATTTCACCTAGAGTTCCCCCACCACCTCAACTTCAATTCCTAGAAAGAGGACCTCAAGCACCCTAA

mRNA sequence

ATGGCTTCTTCTTCTCAACATACTTCACTTCCTACCTCTTCTACTCAAGCTCCAAATGCCACAAGCATTCCCTTTCCACCATTGGAGAACTTCCAACACCACATGGTTTCAGATTCTAGGCTAGCTGCTGTTAGGGGAGGAAACCCGCTTCAAACATTTGAATGTCCTCCATGCCAAGCTTCTACACAACATCCTATAATGAGCCCACATGGTTATGTTAATTTTCAGCAACTACCCACCCTTAATATACCTCAAAACAGTGAGTTTAGGGCTGAAAATCCTCAACAACTTCTTCCAATGATCAATCCGGCTAGTGTTCATCCTTATGGAATGCCAAACCCATCTACTCTATTTCCTAGCCTTCCACCTTATTATGGAATGGGTCATTGGGTACTTCCAACCAATTATGGGATGATTTCACCTAGAGTTCCCCCACCACCTCAACTTCAATTCCTAGAAAGAGGACCTCAAGCACCCTAA

Coding sequence (CDS)

ATGGCTTCTTCTTCTCAACATACTTCACTTCCTACCTCTTCTACTCAAGCTCCAAATGCCACAAGCATTCCCTTTCCACCATTGGAGAACTTCCAACACCACATGGTTTCAGATTCTAGGCTAGCTGCTGTTAGGGGAGGAAACCCGCTTCAAACATTTGAATGTCCTCCATGCCAAGCTTCTACACAACATCCTATAATGAGCCCACATGGTTATGTTAATTTTCAGCAACTACCCACCCTTAATATACCTCAAAACAGTGAGTTTAGGGCTGAAAATCCTCAACAACTTCTTCCAATGATCAATCCGGCTAGTGTTCATCCTTATGGAATGCCAAACCCATCTACTCTATTTCCTAGCCTTCCACCTTATTATGGAATGGGTCATTGGGTACTTCCAACCAATTATGGGATGATTTCACCTAGAGTTCCCCCACCACCTCAACTTCAATTCCTAGAAAGAGGACCTCAAGCACCCTAA

Protein sequence

MASSSQHTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPPCQASTQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENPQQLLPMINPASVHPYGMPNPSTLFPSLPPYYGMGHWVLPTNYGMISPRVPPPPQLQFLERGPQAP
Homology
BLAST of Moc05g12570 vs. NCBI nr
Match: XP_022158979.1 (uncharacterized protein LOC111025424 [Momordica charantia])

HSP 1 Score: 320.1 bits (819), Expect = 1.1e-83
Identity = 159/183 (86.89%), Postives = 159/183 (86.89%), Query Frame = 0

Query: 1    MASSSQHTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPPCQA 60
            MASSSQHTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPPCQA
Sbjct: 834  MASSSQHTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPPCQA 893

Query: 61   STQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENPQQLLPMIN------------------ 120
            STQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENPQQLLPMIN                  
Sbjct: 894  STQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENPQQLLPMINPGMYQPFMFNPVPSYHFP 953

Query: 121  ------PASVHPYGMPNPSTLFPSLPPYYGMGHWVLPTNYGMISPRVPPPPQLQFLERGP 160
                  PASVHPYGMPNPSTLFPSLPPYYGMGHWVLPTNYGMISPRVPPPPQLQFLERGP
Sbjct: 954  LSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVLPTNYGMISPRVPPPPQLQFLERGP 1013

BLAST of Moc05g12570 vs. NCBI nr
Match: XP_022158357.1 (uncharacterized protein LOC111024860 [Momordica charantia])

HSP 1 Score: 298.5 bits (763), Expect = 3.4e-77
Identity = 149/183 (81.42%), Postives = 151/183 (82.51%), Query Frame = 0

Query: 1   MASSSQHTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPPCQA 60
           MASSSQHTSLPTSST APNATSIPFPPLENFQHHM SDSRLAAVRGGNPLQTFECPP QA
Sbjct: 1   MASSSQHTSLPTSSTXAPNATSIPFPPLENFQHHMXSDSRLAAVRGGNPLQTFECPPSQA 60

Query: 61  STQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENPQQLLPMIN------------------ 120
            TQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENPQQL PMIN                  
Sbjct: 61  PTQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFP 120

Query: 121 ------PASVHPYGMPNPSTLFPSLPPYYGMGHWVLPTNYGMISPRVPPPPQLQFLERGP 160
                 PASVHPYGMPNPSTLFPSLPPYYGMGHW+ P NYGMISP+VPPPPQL FLERGP
Sbjct: 121 LSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWIPPQNYGMISPKVPPPPQLPFLERGP 180

BLAST of Moc05g12570 vs. NCBI nr
Match: XP_022152366.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111020110 [Momordica charantia])

HSP 1 Score: 291.2 bits (744), Expect = 5.4e-75
Identity = 145/177 (81.92%), Postives = 146/177 (82.49%), Query Frame = 0

Query: 7   HTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPPCQASTQHPI 66
           HTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPP QA TQHPI
Sbjct: 725 HTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPPSQAPTQHPI 784

Query: 67  MSPHGYVNFQQLPTLNIPQNSEFRAENPQQLLPMIN------------------------ 126
           MSPHGYVNFQQLPT NIPQ+SEFRAENPQQL PMIN                        
Sbjct: 785 MSPHGYVNFQQLPTFNIPQSSEFRAENPQQLPPMINPGMYQPFMFNLVPSYHFPLSQMQI 844

Query: 127 PASVHPYGMPNPSTLFPSLPPYYGMGHWVLPTNYGMISPRVPPPPQLQFLERGPQAP 160
           PASVHPYGMPNPSTLFPSL PYYGMGHWV PTNYGMISPRVPPPPQL FLERGPQAP
Sbjct: 845 PASVHPYGMPNPSTLFPSLIPYYGMGHWVPPTNYGMISPRVPPPPQLSFLERGPQAP 901

BLAST of Moc05g12570 vs. NCBI nr
Match: XP_022157800.1 (protein PAF1 homolog [Momordica charantia])

HSP 1 Score: 216.9 bits (551), Expect = 1.3e-52
Identity = 110/149 (73.83%), Postives = 113/149 (75.84%), Query Frame = 0

Query: 35  MVSDSRLAAVRGGNPLQTFECPPCQASTQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENP 94
           MV D RLAAVRGGNPLQTFE PP QA TQHP+MSPHGYVNFQQLP LNIPQNSEFRAE+P
Sbjct: 1   MVPDFRLAAVRGGNPLQTFEFPPSQAPTQHPMMSPHGYVNFQQLPILNIPQNSEFRAEHP 60

Query: 95  QQLLPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHW 154
           QQ  PMIN                        PASVHPYGMPNPSTLFPSLPPYY MG+W
Sbjct: 61  QQPPPMINPGMYQPFLFNPVPPYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYRMGNW 120

Query: 155 VLPTNYGMISPRVPPPPQLQFLERGPQAP 160
           V P NYGMISPRVPPPPQL FLERGPQAP
Sbjct: 121 VPPQNYGMISPRVPPPPQLPFLERGPQAP 149

BLAST of Moc05g12570 vs. NCBI nr
Match: XP_022156936.1 (uncharacterized protein LOC111023763 [Momordica charantia])

HSP 1 Score: 172.2 bits (435), Expect = 3.7e-39
Identity = 86/117 (73.50%), Postives = 87/117 (74.36%), Query Frame = 0

Query: 67  MSPHGYVNFQQLPTLNIPQNSEFRAENPQQLLPMINP----------------------- 126
           M+PHGYVNFQQLPTLNIPQNSEFRAENPQQL PMINP                       
Sbjct: 1   MAPHGYVNFQQLPTLNIPQNSEFRAENPQQLPPMINPGMYQPFMFNLVPSYHFPLSQMQI 60

Query: 127 -ASVHPYGMPNPSTLFPSLPPYYGMGHWVLPTNYGMISPRVPPPPQLQFLERGPQAP 160
            ASVHPYGMPNPSTLFPS PPYYGMGHWV P NYGMISPRVPPPPQL FLERGPQ P
Sbjct: 61  LASVHPYGMPNPSTLFPSFPPYYGMGHWVPPHNYGMISPRVPPPPQLPFLERGPQPP 117

BLAST of Moc05g12570 vs. ExPASy TrEMBL
Match: A0A6J1E110 (uncharacterized protein LOC111025424 OS=Momordica charantia OX=3673 GN=LOC111025424 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.3e-84
Identity = 159/183 (86.89%), Postives = 159/183 (86.89%), Query Frame = 0

Query: 1    MASSSQHTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPPCQA 60
            MASSSQHTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPPCQA
Sbjct: 834  MASSSQHTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPPCQA 893

Query: 61   STQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENPQQLLPMIN------------------ 120
            STQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENPQQLLPMIN                  
Sbjct: 894  STQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENPQQLLPMINPGMYQPFMFNPVPSYHFP 953

Query: 121  ------PASVHPYGMPNPSTLFPSLPPYYGMGHWVLPTNYGMISPRVPPPPQLQFLERGP 160
                  PASVHPYGMPNPSTLFPSLPPYYGMGHWVLPTNYGMISPRVPPPPQLQFLERGP
Sbjct: 954  LSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVLPTNYGMISPRVPPPPQLQFLERGP 1013

BLAST of Moc05g12570 vs. ExPASy TrEMBL
Match: A0A6J1DX11 (uncharacterized protein LOC111024860 OS=Momordica charantia OX=3673 GN=LOC111024860 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.6e-77
Identity = 149/183 (81.42%), Postives = 151/183 (82.51%), Query Frame = 0

Query: 1   MASSSQHTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPPCQA 60
           MASSSQHTSLPTSST APNATSIPFPPLENFQHHM SDSRLAAVRGGNPLQTFECPP QA
Sbjct: 1   MASSSQHTSLPTSSTXAPNATSIPFPPLENFQHHMXSDSRLAAVRGGNPLQTFECPPSQA 60

Query: 61  STQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENPQQLLPMIN------------------ 120
            TQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENPQQL PMIN                  
Sbjct: 61  PTQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENPQQLPPMINPGMYQPFMFNPVPSYHFP 120

Query: 121 ------PASVHPYGMPNPSTLFPSLPPYYGMGHWVLPTNYGMISPRVPPPPQLQFLERGP 160
                 PASVHPYGMPNPSTLFPSLPPYYGMGHW+ P NYGMISP+VPPPPQL FLERGP
Sbjct: 121 LSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWIPPQNYGMISPKVPPPPQLPFLERGP 180

BLAST of Moc05g12570 vs. ExPASy TrEMBL
Match: A0A6J1DHH9 (LOW QUALITY PROTEIN: uncharacterized protein LOC111020110 OS=Momordica charantia OX=3673 GN=LOC111020110 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.6e-75
Identity = 145/177 (81.92%), Postives = 146/177 (82.49%), Query Frame = 0

Query: 7   HTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPPCQASTQHPI 66
           HTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPP QA TQHPI
Sbjct: 725 HTSLPTSSTQAPNATSIPFPPLENFQHHMVSDSRLAAVRGGNPLQTFECPPSQAPTQHPI 784

Query: 67  MSPHGYVNFQQLPTLNIPQNSEFRAENPQQLLPMIN------------------------ 126
           MSPHGYVNFQQLPT NIPQ+SEFRAENPQQL PMIN                        
Sbjct: 785 MSPHGYVNFQQLPTFNIPQSSEFRAENPQQLPPMINPGMYQPFMFNLVPSYHFPLSQMQI 844

Query: 127 PASVHPYGMPNPSTLFPSLPPYYGMGHWVLPTNYGMISPRVPPPPQLQFLERGPQAP 160
           PASVHPYGMPNPSTLFPSL PYYGMGHWV PTNYGMISPRVPPPPQL FLERGPQAP
Sbjct: 845 PASVHPYGMPNPSTLFPSLIPYYGMGHWVPPTNYGMISPRVPPPPQLSFLERGPQAP 901

BLAST of Moc05g12570 vs. ExPASy TrEMBL
Match: A0A6J1DU32 (protein PAF1 homolog OS=Momordica charantia OX=3673 GN=LOC111024420 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 6.3e-53
Identity = 110/149 (73.83%), Postives = 113/149 (75.84%), Query Frame = 0

Query: 35  MVSDSRLAAVRGGNPLQTFECPPCQASTQHPIMSPHGYVNFQQLPTLNIPQNSEFRAENP 94
           MV D RLAAVRGGNPLQTFE PP QA TQHP+MSPHGYVNFQQLP LNIPQNSEFRAE+P
Sbjct: 1   MVPDFRLAAVRGGNPLQTFEFPPSQAPTQHPMMSPHGYVNFQQLPILNIPQNSEFRAEHP 60

Query: 95  QQLLPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHW 154
           QQ  PMIN                        PASVHPYGMPNPSTLFPSLPPYY MG+W
Sbjct: 61  QQPPPMINPGMYQPFLFNPVPPYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYRMGNW 120

Query: 155 VLPTNYGMISPRVPPPPQLQFLERGPQAP 160
           V P NYGMISPRVPPPPQL FLERGPQAP
Sbjct: 121 VPPQNYGMISPRVPPPPQLPFLERGPQAP 149

BLAST of Moc05g12570 vs. ExPASy TrEMBL
Match: A0A6J1DWG3 (uncharacterized protein LOC111023763 OS=Momordica charantia OX=3673 GN=LOC111023763 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.8e-39
Identity = 86/117 (73.50%), Postives = 87/117 (74.36%), Query Frame = 0

Query: 67  MSPHGYVNFQQLPTLNIPQNSEFRAENPQQLLPMINP----------------------- 126
           M+PHGYVNFQQLPTLNIPQNSEFRAENPQQL PMINP                       
Sbjct: 1   MAPHGYVNFQQLPTLNIPQNSEFRAENPQQLPPMINPGMYQPFMFNLVPSYHFPLSQMQI 60

Query: 127 -ASVHPYGMPNPSTLFPSLPPYYGMGHWVLPTNYGMISPRVPPPPQLQFLERGPQAP 160
            ASVHPYGMPNPSTLFPS PPYYGMGHWV P NYGMISPRVPPPPQL FLERGPQ P
Sbjct: 61  LASVHPYGMPNPSTLFPSFPPYYGMGHWVPPHNYGMISPRVPPPPQLPFLERGPQPP 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158979.11.1e-8386.89uncharacterized protein LOC111025424 [Momordica charantia][more]
XP_022158357.13.4e-7781.42uncharacterized protein LOC111024860 [Momordica charantia][more]
XP_022152366.15.4e-7581.92LOW QUALITY PROTEIN: uncharacterized protein LOC111020110 [Momordica charantia][more]
XP_022157800.11.3e-5273.83protein PAF1 homolog [Momordica charantia][more]
XP_022156936.13.7e-3973.50uncharacterized protein LOC111023763 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E1105.3e-8486.89uncharacterized protein LOC111025424 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DX111.6e-7781.42uncharacterized protein LOC111024860 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DHH92.6e-7581.92LOW QUALITY PROTEIN: uncharacterized protein LOC111020110 OS=Momordica charantia... [more]
A0A6J1DU326.3e-5373.83protein PAF1 homolog OS=Momordica charantia OX=3673 GN=LOC111024420 PE=4 SV=1[more]
A0A6J1DWG31.8e-3973.50uncharacterized protein LOC111023763 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g12570.1Moc05g12570.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding