Moc05g12170 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g12170
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotrans_gag domain-containing protein
Location	chr5: 9527840 .. 9528355 (-)
RNA-Seq Expression	Moc05g12170
Synteny	Moc05g12170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGACTGCACAACCCTCACAATGACGCTTTAGTCATTGAAGCCCAGATCGATCACATGACGGTCGGGTGCATACTGATCGACGGAGGTGCCTCCACTAATATTATATCGTTTTCCACTTACGTCGCTCTAGGATGGGAGCGAGGCCAACTCAGGCCGAACCCCACTCAACTTGTTGGTTTTGTAGGAGAACTATTTAGCCCGAAAGGATGCGTTAGTCTTCCCATAACCCTGGGAGAAGGAGAGCACCAAGTCCAGAAGATGGCAAAATTTATGGTGAATGAAGCCAGGTCGGCGTACAATGCAATATTCGGCCGACCTATCGTCTACGACCTACAAGTCGTGCCATCCACAGTACATCAGGCGATGAAGTACCCAACTCCCAAGGAGGTGGGAATGGTGAGAGTCGAACATAAAACTTCGAGGGAGTGCTATGTGGCAGCCCTCAAGCCCGCTTGCAATGCCGTTGAGAGCCTGCAGAGGAATTGGAACTTGTCCCTCTGCTCGGCCTAG

mRNA sequence

ATGAAAGGACTGCACAACCCTCACAATGACGCTTTAGTCATTGAAGCCCAGATCGATCACATGACGGTCGGGTGCATACTGATCGACGGAGGTGCCTCCACTAATATTATATCGTTTTCCACTTACGTCGCTCTAGGATGGGAGCGAGGCCAACTCAGGCCGAACCCCACTCAACTTGTTGGTTTTGTAGGAGAACTATTTAGCCCGAAAGGATGCGTTAGTCTTCCCATAACCCTGGGAGAAGGAGAGCACCAAGTCCAGAAGATGGCAAAATTTATGGTGAATGAAGCCAGGTCGGCGTACAATGCAATATTCGGCCGACCTATCGTCTACGACCTACAAGTCGTGCCATCCACAGTACATCAGGCGATGAAGTACCCAACTCCCAAGGAGGTGGGAATGGTGAGAGTCGAACATAAAACTTCGAGGGAGTGCTATGTGGCAGCCCTCAAGCCCGCTTGCAATGCCGTTGAGAGCCTGCAGAGGAATTGGAACTTGTCCCTCTGCTCGGCCTAG

Coding sequence (CDS)

ATGAAAGGACTGCACAACCCTCACAATGACGCTTTAGTCATTGAAGCCCAGATCGATCACATGACGGTCGGGTGCATACTGATCGACGGAGGTGCCTCCACTAATATTATATCGTTTTCCACTTACGTCGCTCTAGGATGGGAGCGAGGCCAACTCAGGCCGAACCCCACTCAACTTGTTGGTTTTGTAGGAGAACTATTTAGCCCGAAAGGATGCGTTAGTCTTCCCATAACCCTGGGAGAAGGAGAGCACCAAGTCCAGAAGATGGCAAAATTTATGGTGAATGAAGCCAGGTCGGCGTACAATGCAATATTCGGCCGACCTATCGTCTACGACCTACAAGTCGTGCCATCCACAGTACATCAGGCGATGAAGTACCCAACTCCCAAGGAGGTGGGAATGGTGAGAGTCGAACATAAAACTTCGAGGGAGTGCTATGTGGCAGCCCTCAAGCCCGCTTGCAATGCCGTTGAGAGCCTGCAGAGGAATTGGAACTTGTCCCTCTGCTCGGCCTAG

Protein sequence

MKGLHNPHNDALVIEAQIDHMTVGCILIDGGASTNIISFSTYVALGWERGQLRPNPTQLVGFVGELFSPKGCVSLPITLGEGEHQVQKMAKFMVNEARSAYNAIFGRPIVYDLQVVPSTVHQAMKYPTPKEVGMVRVEHKTSRECYVAALKPACNAVESLQRNWNLSLCSA

Homology

[Close]

BLAST of Moc05g12170 vs. NCBI nr
Match: XP_022150861.1 (uncharacterized protein LOC111018906 [Momordica charantia])

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-46
Identity = 92/165 (55.76%), Postives = 121/165 (73.33%), Query Frame = 0


Query: 1   MKGLHNPHNDALVIEAQIDHMTVGCILIDGGASTNIISFSTYVALGWERGQLRPNPTQLV 60
           ++G+H PHNDALVI   IDH+ V  +L+DGGAS NI+S +TY+ALGW R QL+ +PT LV
Sbjct: 58  LEGVHLPHNDALVIAPLIDHVLVRRVLVDGGASENILSLTTYLALGWTRSQLKKSPTPLV 117

Query: 61  GFVGELFSPKGCVSLPITLGEGEHQVQKMAKFMVNEARSAYNAIFGRPIVYDLQVVPSTV 120
           GF GEL SP+GC+ LP+ +G+ + QV +MA+F+V   RSAYNAIFGRPI++  + V ST+
Sbjct: 118 GFSGELVSPEGCIDLPVMIGQDDTQVTQMAEFVVIGGRSAYNAIFGRPIIHSFRAVCSTL 177

Query: 121 HQAMKYPTPKEVGMVRVEHKTSRECYVAALKPACNAVESLQRNWN 166
           HQ +KY TP  VG VR E KTSRECY +ALK +       Q +W+
Sbjct: 178 HQVLKYSTPNGVGTVRGEQKTSRECYASALKGSSVYALEEQASWD 222

[Close]

BLAST of Moc05g12170 vs. NCBI nr
Match: XP_022155866.1 (uncharacterized protein LOC111022880 [Momordica charantia])

HSP 1 Score: 193.0 bits (489), Expect = 2.2e-45
Identity = 89/162 (54.94%), Postives = 121/162 (74.69%), Query Frame = 0


Query: 1   MKGLHNPHNDALVIEAQIDHMTVGCILIDGGASTNIISFSTYVALGWERGQLRPNPTQLV 60
           ++ +H PHNDAL+I   IDH+ V  +L++GGAS NI+S  TY+ALGW R QLR +PT LV
Sbjct: 133 LEEVHLPHNDALMIALLIDHVVVRRVLVNGGASANILSLPTYLALGWTRSQLRRSPTPLV 192

Query: 61  GFVGELFSPKGCVSLPITLGEGEHQVQKMAKFMVNEARSAYNAIFGRPIVYDLQVVPSTV 120
           GF GE   P+GC+ LP+TLG+ + ++ +MA+F+V + RS YNAIFGRPI++  + +PST+
Sbjct: 193 GFSGESVIPEGCIDLPVTLGQNQTRITQMAEFVVVDGRSVYNAIFGRPIIHSFRAIPSTL 252

Query: 121 HQAMKYPTPKEVGMVRVEHKTSRECYVAALK-PACNAVESLQ 162
           HQ +KYPTP  VG VR E   SRECY AALK P+  A+E+L+
Sbjct: 253 HQVLKYPTPNGVGTVRGEQAASRECYAAALKGPSVCALETLR 294

[Close]

BLAST of Moc05g12170 vs. NCBI nr
Match: XP_022152367.1 (uncharacterized protein LOC111020111 [Momordica charantia])

HSP 1 Score: 192.6 bits (488), Expect = 2.8e-45
Identity = 91/163 (55.83%), Postives = 117/163 (71.78%), Query Frame = 0


Query: 1   MKGLHNPHNDALVIEAQIDHMTVGCILIDGGASTNIISFSTYVALGWERGQLRPNPTQLV 60
           ++G+H PHNDALVI   ID + V  +L+DGGAS NI+S  TY+ALGW R QL+ +PT LV
Sbjct: 211 LEGVHLPHNDALVIAPLIDDVLVRRVLVDGGASANILSLPTYLALGWTRSQLKKSPTPLV 270

Query: 61  GFVGELFSPKGCVSLPITLGEGEHQVQKMAKFMVNEARSAYNAIFGRPIVYDLQVVPSTV 120
           GF GE  SP+GC+ LP+T+G+   QV +MA+F+V + R AYNAIFGRPI++  + VPST+
Sbjct: 271 GFSGESVSPEGCIDLPVTMGQDATQVTQMAEFVVIDGRLAYNAIFGRPIIHSFRAVPSTL 330

Query: 121 HQAMKYPTPKEVGMVRVEHKTSRECYVAALKPACNAVESLQRN 164
           HQ +KY TP  VG VR E KTSRECY + LK +   V   Q N
Sbjct: 331 HQVLKYSTPNGVGTVRGEQKTSRECYASTLKGSSVCVLEEQAN 373

[Close]

BLAST of Moc05g12170 vs. NCBI nr
Match: XP_022156175.1 (uncharacterized protein LOC111023128 [Momordica charantia])

HSP 1 Score: 189.5 bits (480), Expect = 2.4e-44
Identity = 87/151 (57.62%), Postives = 116/151 (76.82%), Query Frame = 0


Query: 1   MKGLHNPHNDALVIEAQIDHMTVGCILIDGGASTNIISFSTYVALGWERGQLRPNPTQLV 60
           ++G+H PHNDALVI   ID+M V  +LIDG ASTNI+S STY+ALGWE+ QL+  PT LV
Sbjct: 140 LEGVHLPHNDALVISPIIDNMQVQPVLIDGRASTNILSLSTYLALGWEKSQLKRCPTPLV 199

Query: 61  GFVGELFSPKGCVSLPITLGEGEHQVQKMAKFMVNEARSAYNAIFGRPIVYDLQVVPSTV 120
           GF GE+ + +GC  LP+T+GE +++V+K+ +F++ +  SAYNAI GRP +++LQVVPST 
Sbjct: 200 GFSGEMIAAEGCTDLPVTIGENDNKVRKVIEFVMVDGASAYNAILGRPYIHELQVVPSTY 259

Query: 121 HQAMKYPTPKEVGMVRVEHKTSRECYVAALK 152
           HQ MKYPTP  V +++ E K SRECY  ALK
Sbjct: 260 HQVMKYPTPCGVEIIKGEQKASRECYATALK 290

[Close]

BLAST of Moc05g12170 vs. NCBI nr
Match: XP_022152029.1 (uncharacterized protein LOC111019838 [Momordica charantia])

HSP 1 Score: 187.2 bits (474), Expect = 1.2e-43
Identity = 86/151 (56.95%), Postives = 112/151 (74.17%), Query Frame = 0


Query: 1   MKGLHNPHNDALVIEAQIDHMTVGCILIDGGASTNIISFSTYVALGWERGQLRPNPTQLV 60
           ++ +H PHNDALVI   IDH+ V  +L+DGGAS NI+S  TY+ LGW R QL+ + T LV
Sbjct: 133 LEEVHLPHNDALVIAPLIDHVVVRRVLVDGGASANILSLLTYLTLGWTRSQLKKSLTPLV 192

Query: 61  GFVGELFSPKGCVSLPITLGEGEHQVQKMAKFMVNEARSAYNAIFGRPIVYDLQVVPSTV 120
           GF GE  +P+GC+ LP+T G+ + QV KMA+F+V + RSAYNAIFGRPI++  + VPST+
Sbjct: 193 GFSGESITPEGCIDLPVTFGQDKTQVTKMAEFVVIDGRSAYNAIFGRPIIHSFRAVPSTL 252

Query: 121 HQAMKYPTPKEVGMVRVEHKTSRECYVAALK 152
           HQ +KY TP  VG+VR E   SRECY +ALK
Sbjct: 253 HQVLKYSTPHGVGIVRGEQTASRECYASALK 283

[Close]

BLAST of Moc05g12170 vs. ExPASy TrEMBL
Match: A0A6J1DCR3 (uncharacterized protein LOC111018906 OS=Momordica charantia OX=3673 GN=LOC111018906 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 7.2e-47
Identity = 92/165 (55.76%), Postives = 121/165 (73.33%), Query Frame = 0


Query: 1   MKGLHNPHNDALVIEAQIDHMTVGCILIDGGASTNIISFSTYVALGWERGQLRPNPTQLV 60
           ++G+H PHNDALVI   IDH+ V  +L+DGGAS NI+S +TY+ALGW R QL+ +PT LV
Sbjct: 58  LEGVHLPHNDALVIAPLIDHVLVRRVLVDGGASENILSLTTYLALGWTRSQLKKSPTPLV 117

Query: 61  GFVGELFSPKGCVSLPITLGEGEHQVQKMAKFMVNEARSAYNAIFGRPIVYDLQVVPSTV 120
           GF GEL SP+GC+ LP+ +G+ + QV +MA+F+V   RSAYNAIFGRPI++  + V ST+
Sbjct: 118 GFSGELVSPEGCIDLPVMIGQDDTQVTQMAEFVVIGGRSAYNAIFGRPIIHSFRAVCSTL 177

Query: 121 HQAMKYPTPKEVGMVRVEHKTSRECYVAALKPACNAVESLQRNWN 166
           HQ +KY TP  VG VR E KTSRECY +ALK +       Q +W+
Sbjct: 178 HQVLKYSTPNGVGTVRGEQKTSRECYASALKGSSVYALEEQASWD 222

[Close]

BLAST of Moc05g12170 vs. ExPASy TrEMBL
Match: A0A6J1DT04 (uncharacterized protein LOC111022880 OS=Momordica charantia OX=3673 GN=LOC111022880 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.0e-45
Identity = 89/162 (54.94%), Postives = 121/162 (74.69%), Query Frame = 0


Query: 1   MKGLHNPHNDALVIEAQIDHMTVGCILIDGGASTNIISFSTYVALGWERGQLRPNPTQLV 60
           ++ +H PHNDAL+I   IDH+ V  +L++GGAS NI+S  TY+ALGW R QLR +PT LV
Sbjct: 133 LEEVHLPHNDALMIALLIDHVVVRRVLVNGGASANILSLPTYLALGWTRSQLRRSPTPLV 192

Query: 61  GFVGELFSPKGCVSLPITLGEGEHQVQKMAKFMVNEARSAYNAIFGRPIVYDLQVVPSTV 120
           GF GE   P+GC+ LP+TLG+ + ++ +MA+F+V + RS YNAIFGRPI++  + +PST+
Sbjct: 193 GFSGESVIPEGCIDLPVTLGQNQTRITQMAEFVVVDGRSVYNAIFGRPIIHSFRAIPSTL 252

Query: 121 HQAMKYPTPKEVGMVRVEHKTSRECYVAALK-PACNAVESLQ 162
           HQ +KYPTP  VG VR E   SRECY AALK P+  A+E+L+
Sbjct: 253 HQVLKYPTPNGVGTVRGEQAASRECYAAALKGPSVCALETLR 294

[Close]

BLAST of Moc05g12170 vs. ExPASy TrEMBL
Match: A0A6J1DG07 (uncharacterized protein LOC111020111 OS=Momordica charantia OX=3673 GN=LOC111020111 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.4e-45
Identity = 91/163 (55.83%), Postives = 117/163 (71.78%), Query Frame = 0


Query: 1   MKGLHNPHNDALVIEAQIDHMTVGCILIDGGASTNIISFSTYVALGWERGQLRPNPTQLV 60
           ++G+H PHNDALVI   ID + V  +L+DGGAS NI+S  TY+ALGW R QL+ +PT LV
Sbjct: 211 LEGVHLPHNDALVIAPLIDDVLVRRVLVDGGASANILSLPTYLALGWTRSQLKKSPTPLV 270

Query: 61  GFVGELFSPKGCVSLPITLGEGEHQVQKMAKFMVNEARSAYNAIFGRPIVYDLQVVPSTV 120
           GF GE  SP+GC+ LP+T+G+   QV +MA+F+V + R AYNAIFGRPI++  + VPST+
Sbjct: 271 GFSGESVSPEGCIDLPVTMGQDATQVTQMAEFVVIDGRLAYNAIFGRPIIHSFRAVPSTL 330

Query: 121 HQAMKYPTPKEVGMVRVEHKTSRECYVAALKPACNAVESLQRN 164
           HQ +KY TP  VG VR E KTSRECY + LK +   V   Q N
Sbjct: 331 HQVLKYSTPNGVGTVRGEQKTSRECYASTLKGSSVCVLEEQAN 373

[Close]

BLAST of Moc05g12170 vs. ExPASy TrEMBL
Match: A0A6J1DPJ9 (uncharacterized protein LOC111023128 OS=Momordica charantia OX=3673 GN=LOC111023128 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.2e-44
Identity = 87/151 (57.62%), Postives = 116/151 (76.82%), Query Frame = 0


Query: 1   MKGLHNPHNDALVIEAQIDHMTVGCILIDGGASTNIISFSTYVALGWERGQLRPNPTQLV 60
           ++G+H PHNDALVI   ID+M V  +LIDG ASTNI+S STY+ALGWE+ QL+  PT LV
Sbjct: 140 LEGVHLPHNDALVISPIIDNMQVQPVLIDGRASTNILSLSTYLALGWEKSQLKRCPTPLV 199

Query: 61  GFVGELFSPKGCVSLPITLGEGEHQVQKMAKFMVNEARSAYNAIFGRPIVYDLQVVPSTV 120
           GF GE+ + +GC  LP+T+GE +++V+K+ +F++ +  SAYNAI GRP +++LQVVPST 
Sbjct: 200 GFSGEMIAAEGCTDLPVTIGENDNKVRKVIEFVMVDGASAYNAILGRPYIHELQVVPSTY 259

Query: 121 HQAMKYPTPKEVGMVRVEHKTSRECYVAALK 152
           HQ MKYPTP  V +++ E K SRECY  ALK
Sbjct: 260 HQVMKYPTPCGVEIIKGEQKASRECYATALK 290

[Close]

BLAST of Moc05g12170 vs. ExPASy TrEMBL
Match: A0A6J1DYW5 (uncharacterized protein LOC111024332 OS=Momordica charantia OX=3673 GN=LOC111024332 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.7e-44
Identity = 88/168 (52.38%), Postives = 116/168 (69.05%), Query Frame = 0


Query: 1   MKGLHNPHNDALVIEAQIDHMTVGCILIDGGASTNIISFSTYVALGWERGQLRPNPTQLV 60
           ++ +H PHNDALVI   IDH+ V  +L+DGGAS NI+S  TY+ALGW R QL+ +PT LV
Sbjct: 202 LEEVHLPHNDALVIAPLIDHVVVRRVLVDGGASANILSLPTYLALGWTRSQLKRSPTPLV 261

Query: 61  GFVGELFSPKGCVSLPITLGEGEHQVQKMAKFMVNEARSAYNAIFGRPIVYDLQVVPSTV 120
           GF GE   P+GC+ LP+TLG+ + +V +M +F+V + RS YNAIFGRPI++  + +PST+
Sbjct: 262 GFSGESVIPEGCIDLPVTLGQDQTRVTQMTEFVVVDGRSTYNAIFGRPIIHSFRXIPSTL 321

Query: 121 HQAMKYPTPKEVGMVRVEHKTSRECYVAALKPACNAVESLQRNWNLSL 169
           HQ +KY TP  VG VR E   SRECY AALK +        R+  L L
Sbjct: 322 HQVLKYSTPNGVGTVRGEQTVSRECYAAALKGSSVCALETLRDGTLEL 369

The following BLAST results are available for this feature:

BLAST of Moc05g12170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150861.1	1.5e-46	55.76	uncharacterized protein LOC111018906 [Momordica charantia]	[more]
XP_022155866.1	2.2e-45	54.94	uncharacterized protein LOC111022880 [Momordica charantia]	[more]
XP_022152367.1	2.8e-45	55.83	uncharacterized protein LOC111020111 [Momordica charantia]	[more]
XP_022156175.1	2.4e-44	57.62	uncharacterized protein LOC111023128 [Momordica charantia]	[more]
XP_022152029.1	1.2e-43	56.95	uncharacterized protein LOC111019838 [Momordica charantia]	[more]

BLAST of Moc05g12170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g12170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCR3	7.2e-47	55.76	uncharacterized protein LOC111018906 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DT04	1.0e-45	54.94	uncharacterized protein LOC111022880 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DG07	1.4e-45	55.83	uncharacterized protein LOC111020111 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DPJ9	1.2e-44	57.62	uncharacterized protein LOC111023128 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DYW5	5.7e-44	52.38	uncharacterized protein LOC111024332 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Moc05g12170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 5..131 e-value: 2.1E-7 score: 32.7
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 26..108 e-value: 5.06057E-10 score: 51.9536

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g12170.1	Moc05g12170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity