Moc05g11890 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g11890
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr5: 9272759 .. 9273698 (+)
RNA-Seq ExpressionMoc05g11890
SyntenyMoc05g11890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGACTTGCCATTTCCGATTAAGGATCAACCCGTCATTTCCGGGAAAGTGTCCGAGCTCCATATGCTGGAGCCCGACACGACCGATCTCAAATCCGACCAAGGTAACCGCCTGTCGCAATCCCTGTCGGAACCTAAATCTATAAATAGAGGGTCTCATTTCACCATCAGGTATCAAATTTCTCCTCGAACTTAATATTGAGTCCGAGTTGCTTACTGATTAAGCGTCGAAGATTTTGCTCTCTTTTGCAGGTCTTCTCTTAGCATTTTGGGTCGGAGCAAGGACCAGGTTCAAGCTAGATTGACGTTGTGCAATTTATTGCATAAACATTTGGTGTCGTCTATCGGAAATGACATTACAAGTTGTCCCAACAATTAAAACAATCAGATCCGAGATGGTTCATCCAGCTGATTCCGCAAACACCACTAAACGAAGAGCTCTGAATGCGAGCAATGGAGCACAACATGAAGTTGATGCCAAGTTGATTGAAGATCAGGCTAAGGCAGGGCAAGAGGTGAAGCCACCTCGAAGGTCTACCCATAACGCCAATACTGTCCTCCCACTAACACATCCAAGGCCCAGCAAGACCAACCGAGGTCGAGGTAGGGTCTCGAGAAAGACCTCTTGAAGGGCTACGCCAGCCGTGGATCTTGAGGTTCTTGCAACCCTCCAATGGGAGTTAGATGACATGTGCAATCGAGTGCGCACCATGGAGGAGACATACAACGAAATGATGAGGGCAAACCGAAATGGGTCCTATTTCAAGGCCCCAGGTGGGGCGGACGACCTGCAAGAGGATGGAGATGGCCAAGATCCACCCATCCACCCCGATGACTATGAGCCTGTTGCGGACAATGGAGGGGTCGACTATAGTTTGAGGGATATGACCTTAGAAAGCTCCTTGTTGATAAGAAAAGGAAGGCCTCACAGGGCCTAG

mRNA sequence

ATGGAAGACTTGCCATTTCCGATTAAGGATCAACCCGTCATTTCCGGGAAAGTGTCCGAGCTCCATATGCTGGAGCCCGACACGACCGATCTCAAATCCGACCAAGGTAACCGCCTGTCGCAATCCCTGTCGGAACCTAAATCTATAAATAGAGGGTCTCATTTCACCATCAGGTCTTCTCTTAGCATTTTGGGTCGGAGCAAGGACCAGGTTCAAGCTAGATTGACGTTATCCGAGATGGTTCATCCAGCTGATTCCGCAAACACCACTAAACGAAGAGCTCTGAATGCGAGCAATGGAGCACAACATGAAGTTGATGCCAAGTTGATTGAAGATCAGGCTAAGGCAGGGCAAGAGGTGAAGCCACCTCGAAGGGCTACGCCAGCCGTGGATCTTGAGGTTCTTGCAACCCTCCAATGGGAGTTAGATGACATGTGCAATCGAGTGCGCACCATGGAGGAGACATACAACGAAATGATGAGGGCAAACCGAAATGGGTCCTATTTCAAGGCCCCAGGTGGGGCGGACGACCTGCAAGAGGATGGAGATGGCCAAGATCCACCCATCCACCCCGATGACTATGAGCCTGTTGCGGACAATGGAGGGGTCGACTATAGTTTGAGGGATATGACCTTAGAAAGCTCCTTGTTGATAAGAAAAGGAAGGCCTCACAGGGCCTAG

Coding sequence (CDS)

ATGGAAGACTTGCCATTTCCGATTAAGGATCAACCCGTCATTTCCGGGAAAGTGTCCGAGCTCCATATGCTGGAGCCCGACACGACCGATCTCAAATCCGACCAAGGTAACCGCCTGTCGCAATCCCTGTCGGAACCTAAATCTATAAATAGAGGGTCTCATTTCACCATCAGGTCTTCTCTTAGCATTTTGGGTCGGAGCAAGGACCAGGTTCAAGCTAGATTGACGTTATCCGAGATGGTTCATCCAGCTGATTCCGCAAACACCACTAAACGAAGAGCTCTGAATGCGAGCAATGGAGCACAACATGAAGTTGATGCCAAGTTGATTGAAGATCAGGCTAAGGCAGGGCAAGAGGTGAAGCCACCTCGAAGGGCTACGCCAGCCGTGGATCTTGAGGTTCTTGCAACCCTCCAATGGGAGTTAGATGACATGTGCAATCGAGTGCGCACCATGGAGGAGACATACAACGAAATGATGAGGGCAAACCGAAATGGGTCCTATTTCAAGGCCCCAGGTGGGGCGGACGACCTGCAAGAGGATGGAGATGGCCAAGATCCACCCATCCACCCCGATGACTATGAGCCTGTTGCGGACAATGGAGGGGTCGACTATAGTTTGAGGGATATGACCTTAGAAAGCTCCTTGTTGATAAGAAAAGGAAGGCCTCACAGGGCCTAG

Protein sequence

MEDLPFPIKDQPVISGKVSELHMLEPDTTDLKSDQGNRLSQSLSEPKSINRGSHFTIRSSLSILGRSKDQVQARLTLSEMVHPADSANTTKRRALNASNGAQHEVDAKLIEDQAKAGQEVKPPRRATPAVDLEVLATLQWELDDMCNRVRTMEETYNEMMRANRNGSYFKAPGGADDLQEDGDGQDPPIHPDDYEPVADNGGVDYSLRDMTLESSLLIRKGRPHRA
Homology
[Close]
BLAST of Moc05g11890 vs. NCBI nr
Match: XP_022156638.1 (uncharacterized protein LOC111023488 [Momordica charantia])

HSP 1 Score: 115.2 bits (287), Expect = 7.6e-22
Identity = 67/137 (48.91%), Postives = 79/137 (57.66%), Query Frame = 0 

Query: 80  MVHPADSANTTKRRALNASNGAQHEVDAKLIEDQAKAGQEVKPPRRATPAVDLEVLATLQ 139
           MV P +SANT +RRALN +N AQHE+DAK+ E+Q KAGQEV PPRR+T            
Sbjct: 1   MVQPIESANTAERRALNGNNDAQHELDAKVTEEQTKAGQEVDPPRRSTR----------- 60

Query: 140 WELDDMCNRVRTMEETYNEMMRANRNGSYFKAPGGADDLQEDGDGQDPPIHPDDYEPVAD 199
                  N    +   +    +ANR        GG DDL EDGD  DPPIHPDDYEP  +
Sbjct: 61  -------NANTILPPAHPRSGKANRGRG-----GGTDDLPEDGDDLDPPIHPDDYEPAVE 114

Query: 200 NGGVDYSLRDMTLESSL 217
           N G+DYSLRD  L   L
Sbjct: 121 NKGIDYSLRDHDLRKHL 114

[Close]
BLAST of Moc05g11890 vs. NCBI nr
Match: XP_022157193.1 (uncharacterized protein LOC111023967 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-08
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 152 MEETYNEMMRANRNGSYFKAPGGADDLQEDGDGQDPPIHPDDYEPVADNG 202
           MEETYN+MM  NR  S    PGG DDL +DGD QD P HPDDYEP+ADNG
Sbjct: 1   MEETYNKMMWVNRIRSQSYVPGGVDDLLDDGDDQDLPFHPDDYEPIADNG 50

[Close]
BLAST of Moc05g11890 vs. ExPASy TrEMBL
Match: A0A6J1DR60 (uncharacterized protein LOC111023488 OS=Momordica charantia OX=3673 GN=LOC111023488 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.7e-22
Identity = 67/137 (48.91%), Postives = 79/137 (57.66%), Query Frame = 0 

Query: 80  MVHPADSANTTKRRALNASNGAQHEVDAKLIEDQAKAGQEVKPPRRATPAVDLEVLATLQ 139
           MV P +SANT +RRALN +N AQHE+DAK+ E+Q KAGQEV PPRR+T            
Sbjct: 1   MVQPIESANTAERRALNGNNDAQHELDAKVTEEQTKAGQEVDPPRRSTR----------- 60

Query: 140 WELDDMCNRVRTMEETYNEMMRANRNGSYFKAPGGADDLQEDGDGQDPPIHPDDYEPVAD 199
                  N    +   +    +ANR        GG DDL EDGD  DPPIHPDDYEP  +
Sbjct: 61  -------NANTILPPAHPRSGKANRGRG-----GGTDDLPEDGDDLDPPIHPDDYEPAVE 114

Query: 200 NGGVDYSLRDMTLESSL 217
           N G+DYSLRD  L   L
Sbjct: 121 NKGIDYSLRDHDLRKHL 114

[Close]
BLAST of Moc05g11890 vs. ExPASy TrEMBL
Match: A0A6J1DSR0 (uncharacterized protein LOC111023967 OS=Momordica charantia OX=3673 GN=LOC111023967 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-08
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 152 MEETYNEMMRANRNGSYFKAPGGADDLQEDGDGQDPPIHPDDYEPVADNG 202
           MEETYN+MM  NR  S    PGG DDL +DGD QD P HPDDYEP+ADNG
Sbjct: 1   MEETYNKMMWVNRIRSQSYVPGGVDDLLDDGDDQDLPFHPDDYEPIADNG 50

The following BLAST results are available for this feature:
BLAST of Moc05g11890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156638.17.6e-2248.91uncharacterized protein LOC111023488 [Momordica charantia][more]
XP_022157193.12.1e-0868.00uncharacterized protein LOC111023967 [Momordica charantia][more]
BLAST of Moc05g11890 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc05g11890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DR603.7e-2248.91uncharacterized protein LOC111023488 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DSR01.0e-0868.00uncharacterized protein LOC111023967 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
BLAST of Moc05g11890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g11890.1Moc05g11890.1mRNA