Moc05g11820 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g11820
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr5: 9203553 .. 9204764 (-)
RNA-Seq ExpressionMoc05g11820
SyntenyMoc05g11820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATCGGCGCTCCAGAGTCCTCATGGATGGACCCGATTGTGGACTTTATTGGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAGGTTGGCTAGGCAAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCGTTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAAATGCCTAACCCCTGAAGAGGGCCTATACGTCCTCAGGGAAATCCACGAAGGAGTGTGCGGCAATCACTCAGGCGCCCGGTCGCTGTCAGCCAAAGTGATCCGACAAGGATACTATTGGCCGACCCTCAACCAGGACGCCAAGAAGTTCGTTAGAACTTGCGACAATTGCCAACGCTACGGAAACATAATCCACCAACCTTCCGAGCTGCTCACCCCCATCTCGGCCCCGTGGCCATTCGCGCAGTGGGGGGTAGATATCATTGGTCCTTTCCCTTTGGGCAAAGGCCAGACCAAGTTCGCTGTGGTTGCTGTGGACTATTTCACAAAGTGGGCCGAGGCCGAGGCACTCTCCCACATAACGGAATCCAGAGTCACGTCCTTTGTATGGACAAATATCGTATGTTGCTTTGGTATACCGAAGGCCATTGTGACAGATAATGGGAAGCAGTTTGACAACGCGAAGTTCAAAAGCTTTTGCAGCGAACTTGGCATAAGTCACCTTAGCTCGTCCCCCGCACATCCGTAAGCAAATGGGCAGGTGGAGGCAGTCAACAAGATCATCAAGCGAGGCATCAAACTTAGACTGGACTCCAAGAAAGGCAGGTGGGCCGAGGAACTACCAGAGGTTCTATGGTCGTACCGGACCACCCAAAGAGAATCGACGGGTGAGACCCCGTTCTCCCTGGCCTTCGACTCCGAAGCTGTAGTCCCGGTTGAGATCGGCATGCCATCTGACAGAGTAGAGCGTTACGAGCCTGCAGCAAATGAGGAAGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACACTACAACGCCCGCGTTCGACCTCGGACCTTCCAAGTCGGACATCTGGTCTTAAGAAGGGTCCAAACCCATGTGGGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAGTAATCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTAGAGCACCCGTGA

mRNA sequence

ATGGAGATCGGCGCTCCAGAGTCCTCATGGATGGACCCGATTGTGGACTTTATTGGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAGGTTGGCTAGGCAAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCGTTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAAATGCCTAACCCCTGAAGAGGGCCTATACGGCAGAATGGCCAGACACTACAACGCCCGCGTTCGACCTCGGACCTTCCAAGTCGGACATCTGGTCTTAAGAAGGGTCCAAACCCATGTGGGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAGTAATCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTAGAGCACCCGTGA

Coding sequence (CDS)

ATGGAGATCGGCGCTCCAGAGTCCTCATGGATGGACCCGATTGTGGACTTTATTGGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAGGTTGGCTAGGCAAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCGTTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAAATGCCTAACCCCTGAAGAGGGCCTATACGGCAGAATGGCCAGACACTACAACGCCCGCGTTCGACCTCGGACCTTCCAAGTCGGACATCTGGTCTTAAGAAGGGTCCAAACCCATGTGGGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAGTAATCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTAGAGCACCCGTGA

Protein sequence

MEIGAPESSWMDPIVDFIGGNSPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLKCLTPEEGLYGRMARHYNARVRPRTFQVGHLVLRRVQTHVGALDPTWEGPFEVKGVIRPGTYILADLKGDVLEHP
Homology
[Close]
BLAST of Moc05g11820 vs. NCBI nr
Match: XP_022143486.1 (uncharacterized protein LOC111013362 [Momordica charantia])

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-26
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIVDFIGGNSPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLKCLT 60
           MEIGAPESSWMDPI DFI GNSPQDPKERR+LAR+AARFVVR GALYRRGFSLPLL+CLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLY 67
           PEEGLY
Sbjct: 310 PEEGLY 315

[Close]
BLAST of Moc05g11820 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 3.8e-26
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIVDFIGGNSPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLKCLT 60
           MEIGAPESSWMDPI DFI GNSPQDPKERR+LAR+AARFVVRG ALYRRGFSLPLL+CLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEGLY 67
           PEEGLY
Sbjct: 352 PEEGLY 357

[Close]
BLAST of Moc05g11820 vs. NCBI nr
Match: XP_022142324.1 (uncharacterized protein LOC111012466 [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-25
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIVDFIGGNSPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLKCLT 60
           MEIGAPESSWMDPI DFI GNSPQDP E R+LAR+AARFVVRGGALYRRGFSLPLL+CLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPNEHRKLARRAARFVVRGGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLY 67
           P+EGLY
Sbjct: 310 PKEGLY 315

[Close]
BLAST of Moc05g11820 vs. NCBI nr
Match: XP_022158520.1 (uncharacterized protein LOC111024991 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIVDFIGGNSPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLKCLT 60
           MEIGAPESSWM+PI DFI GNSPQDPKERR+LAR+AARFV+R GALYRRGFSLPLLKCLT
Sbjct: 240 MEIGAPESSWMEPITDFIKGNSPQDPKERRKLARRAARFVIRDGALYRRGFSLPLLKCLT 299

Query: 61  PEEGL 66
           PEEGL
Sbjct: 300 PEEGL 304

[Close]
BLAST of Moc05g11820 vs. NCBI nr
Match: XP_022156575.1 (uncharacterized protein LOC111023451 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-25
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIVDFIGGNSPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLKCLT 60
           ME+GAPESSWMDPI DFI GNSPQDPKERR+LAR+ AR VVR GALYRRGFSLPLLKCLT
Sbjct: 250 MEVGAPESSWMDPITDFIRGNSPQDPKERRKLARRTARLVVRDGALYRRGFSLPLLKCLT 309

Query: 61  PEEGLY 67
           PEEGLY
Sbjct: 310 PEEGLY 315

[Close]
BLAST of Moc05g11820 vs. ExPASy TrEMBL
Match: A0A6J1CQD7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIVDFIGGNSPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLKCLT 60
           MEIGAPESSWMDPI DFI GNSPQDPKERR+LAR+AARFVVR GALYRRGFSLPLL+CLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLY 67
           PEEGLY
Sbjct: 310 PEEGLY 315

[Close]
BLAST of Moc05g11820 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIVDFIGGNSPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLKCLT 60
           MEIGAPESSWMDPI DFI GNSPQDPKERR+LAR+AARFVVRG ALYRRGFSLPLL+CLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEGLY 67
           PEEGLY
Sbjct: 352 PEEGLY 357

[Close]
BLAST of Moc05g11820 vs. ExPASy TrEMBL
Match: A0A6J1CL97 (uncharacterized protein LOC111012466 OS=Momordica charantia OX=3673 GN=LOC111012466 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 9.2e-26
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIVDFIGGNSPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLKCLT 60
           MEIGAPESSWMDPI DFI GNSPQDP E R+LAR+AARFVVRGGALYRRGFSLPLL+CLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPNEHRKLARRAARFVVRGGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLY 67
           P+EGLY
Sbjct: 310 PKEGLY 315

[Close]
BLAST of Moc05g11820 vs. ExPASy TrEMBL
Match: A0A6J1DW30 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIVDFIGGNSPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLKCLT 60
           MEIGAPESSWM+PI DFI GNSPQDPKERR+LAR+AARFV+R GALYRRGFSLPLLKCLT
Sbjct: 240 MEIGAPESSWMEPITDFIKGNSPQDPKERRKLARRAARFVIRDGALYRRGFSLPLLKCLT 299

Query: 61  PEEGL 66
           PEEGL
Sbjct: 300 PEEGL 304

[Close]
BLAST of Moc05g11820 vs. ExPASy TrEMBL
Match: A0A6J1DQP4 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023451 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIVDFIGGNSPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLKCLT 60
           ME+GAPESSWMDPI DFI GNSPQDPKERR+LAR+ AR VVR GALYRRGFSLPLLKCLT
Sbjct: 250 MEVGAPESSWMDPITDFIRGNSPQDPKERRKLARRTARLVVRDGALYRRGFSLPLLKCLT 309

Query: 61  PEEGLY 67
           PEEGLY
Sbjct: 310 PEEGLY 315

The following BLAST results are available for this feature:
BLAST of Moc05g11820 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143486.12.9e-2690.91uncharacterized protein LOC111013362 [Momordica charantia][more]
XP_022136647.13.8e-2690.91uncharacterized protein LOC111008302 [Momordica charantia][more]
XP_022142324.11.9e-2587.88uncharacterized protein LOC111012466 [Momordica charantia][more]
XP_022158520.12.5e-2589.23uncharacterized protein LOC111024991 [Momordica charantia][more]
XP_022156575.12.5e-2587.88uncharacterized protein LOC111023451 [Momordica charantia][more]
BLAST of Moc05g11820 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc05g11820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CQD71.4e-2690.91Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1[more]
A0A6J1C6171.9e-2690.91Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1[more]
A0A6J1CL979.2e-2687.88uncharacterized protein LOC111012466 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A6J1DW301.2e-2589.23Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1[more]
A0A6J1DQP41.2e-2587.88Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023451 PE=4 SV=1[more]
BLAST of Moc05g11820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g11820.1Moc05g11820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0030430 host cell cytoplasm
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity