Moc05g11770 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g11770
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr5: 9173614 .. 9175756 (+)
RNA-Seq Expression	Moc05g11770
Synteny	Moc05g11770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTTTTGTGACGTGGGGAGTTACCCCACGTCACCCTTCTTCTTCTTCTTCAAGAGTTGGGGAATGTGAAGAATGGTAGGTTATAGAACAGAACCAAGAAAAAAAAAACCCACCAATTCTCTCAAGAACTCTTTCAATCTCTCCCTCTCTTCGATCAAGGTGCTACCACAAGCACGATCTCGAGACCCAAGAGGATAGCGAGGAAGACGTAGTGGTGGTGTTCGTGGGAAACCGTAGAAGAAAAGTTCTTCAAAGGTATTTGGTTTTCCTGTTTTTTTTCTTCTTTCTATTTTGGTTTTGTGTCCCAAAAATCAGCAACGAAGATCTGCTTCCGCTCCGGGATTCACATCCCTTCATATACATCGAGGGAAATGGGGCTAAAACGTATGAAATGAAGTATCTGGTGGTAACCTAACCTGGTTGACTGGAGATCCCAAGATCTAGATTCAATAGACAAACTGGCTGGATAATTCATAGTTGACACACTAAGAAACTTATAGTTTCTTCCCGTTTCTATAATGTTATGTGTGTAATCTGTTGATATTAAGGTCATATTGATATATTGATTACGAGAAAAGTAGTGGCAGAATACTCTTAATCAATAGCACCTATGTGAGATTTGGGTCGGTTCTATGAGAACTTTTCAAATAGCTTATGTTCTCTAAAGTTCTCATGAATTCAGGATCTTGTCCATGACCAAAATGGACACAACCGTATAGAACTCAAAGATAGAAAATAAGATATGTTTGATATTTGTTGTCTCAATTTATAATGAGAAGAATAGTTCCGAGCTAGTTTTCACTATTTCTTTGGTAAATTCGATAGATATTCACTAAGGAAGATTCAAGTCCAAAAGATTCCTCTCCTGATGCATAACTTATTTATTTGCTTTCAACGTCTTGGTCGTGTCTTGTCTGTCTCACTTTCTTTCATGTGGGGGATTGTTGGATTTAAAAGTGTGAAAGAAAGTGTAATTTAAAGAAACTTATTCACATATACGTTGTGAATATGTTTGTGGTTTTGTTTCTTTATTTTATTGCTTTCTTTAAATTTCTCAGTTATTTTCTGCTTATTCCTGTGGTAGAAGTAGGGGATTTTTTCCTAACAAGTGGTTTCAGAGCTTTAGGTTTGTAGTTTCTAGAATTTCTGAGTATGCTCTGTGGTTGCAGAATTGTCTGAACTTCCACATCAGAAAAGATTTCTTGAAACGAGCTACGGTTCTGTGAATAGTGTGGATTGTTCACTATTTGTAGATTTGCTAGGAGTGTGAAGCAGATGTGTCATTCTTTATGAGTCCAGTGAAGATTGACGTGGAGAAATTTGACGGAAGGATCAACTTTGACTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTGGGTTACACAAGGCGTTGAAGGGAAGACCGAGTGAAGGTGCTTCGGAAAAACTAAGCGGTGATGGTGGTCCAATGGAGTCCAGTGGTGGTTCCAGCAGAGGTTCTAAGAAGTCTAGCATGAGTGATGAAGATTGGGAGGAAATGGATTTGAGAGCTGCAAGCGCGATACAAACAAGTTTGGCTAAGAATATTCTTGCGAATGTGCATGGAATTTCGACAGCCAAAGAACTTTGGGAGAAGCTCGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGCTGTACCTGAAGGAGCAGTTTCACACGCTGCAAATGGAGGAAGGTATGAAAATTTCAGATCACCTGAGTAATCTCAATAGCATCATCTTTGAGCTAGAGGCGATCGAAGTGAAGATAGATGACGAAGATAAAGCACTCAGGCTCATCTTATCACTTCCACCTTCTTATGAACACATGAAGCCGATCTTGATGTATGGGAAGGATACTTTGAATTTTGCTGAGGTTACTAGTAAACTCTTGTTAGAGGAAAGAAGGTTGAAGAGTGAAGGGCGTATTTCACATGAAGATTCGGTACTGGTAGCTCGCAATTGGAAGAAAAAGAAAGACTCCGTACAAAAGAAAGCTTGTTGCTGGGGATGGGGACAGTCTGGACACATGAAGAAAGATTGTCCCAACAGAGCCGGTTCGTCAAAGGGCTTTGGGCGGGATGCTGACAATGTTTCTCTCATCAGGGGAGACGATGATCATATCCTTTGA

mRNA sequence

ATGAGAGGTTTTGTGACGTGGGGAGTTACCCCACGTCACCCTTCTTCTTCTTCTTCAAGAGTTGGGGAATGTGAAGAATGGTGCTACCACAAGCACGATCTCGAGACCCAAGAGGATAGCGAGGAAGACGTAGTGGTGGTGTTCGTGGGAAACCGTAGAAGAAAAGTTCTTCAAAGTTATTTTCTGCTTATTCCTGTGGTAGAAGTAGGGGATTTTTTCCTAACAAGTGGTTTCAGAGCTTTAGTGAAGATTGACGTGGAGAAATTTGACGGAAGGATCAACTTTGACTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTGGGTTACACAAGGCGTTGAAGGGAAGACCGAGTGAAGGTGCTTCGGAAAAACTAAGCGGTGATGGTGGTCCAATGGAGTCCAGTGGTGGTTCCAGCAGAGGTTCTAAGAAGTCTAGCATGAGTGATGAAGATTGGGAGGAAATGGATTTGAGAGCTGCAAGCGCGATACAAACAAGTTTGGCTAAGAATATTCTTGCGAATGTGCATGGAATTTCGACAGCCAAAGAACTTTGGGAGAAGCTCGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGCTGTACCTGAAGGAGCAGTTTCACACGCTGCAAATGGAGGAAGGTATGAAAATTTCAGATCACCTGAGTAATCTCAATAGCATCATCTTTGAGCTAGAGGCGATCGAAGTGAAGATAGATGACGAAGATAAAGCACTCAGGCTCATCTTATCACTTCCACCTTCTTATGAACACATGAAGCCGATCTTGATGTATGGGAAGGATACTTTGAATTTTGCTGAGGTTACTAGTAAACTCTTGTTAGAGGAAAGAAGGTTGAAGAGTGAAGGGCGTATTTCACATGAAGATTCGGTACTGGTAGCTCGCAATTGGAAGAAAAAGAAAGACTCCGTACAAAAGAAAGCTTGTTGCTGGGGATGGGGACAGTCTGGACACATGAAGAAAGATTGTCCCAACAGAGCCGGTTCGTCAAAGGGCTTTGGGCGGGATGCTGACAATGTTTCTCTCATCAGGGGAGACGATGATCATATCCTTTGA

Coding sequence (CDS)

ATGAGAGGTTTTGTGACGTGGGGAGTTACCCCACGTCACCCTTCTTCTTCTTCTTCAAGAGTTGGGGAATGTGAAGAATGGTGCTACCACAAGCACGATCTCGAGACCCAAGAGGATAGCGAGGAAGACGTAGTGGTGGTGTTCGTGGGAAACCGTAGAAGAAAAGTTCTTCAAAGTTATTTTCTGCTTATTCCTGTGGTAGAAGTAGGGGATTTTTTCCTAACAAGTGGTTTCAGAGCTTTAGTGAAGATTGACGTGGAGAAATTTGACGGAAGGATCAACTTTGACTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTGGGTTACACAAGGCGTTGAAGGGAAGACCGAGTGAAGGTGCTTCGGAAAAACTAAGCGGTGATGGTGGTCCAATGGAGTCCAGTGGTGGTTCCAGCAGAGGTTCTAAGAAGTCTAGCATGAGTGATGAAGATTGGGAGGAAATGGATTTGAGAGCTGCAAGCGCGATACAAACAAGTTTGGCTAAGAATATTCTTGCGAATGTGCATGGAATTTCGACAGCCAAAGAACTTTGGGAGAAGCTCGAAGCGTTGTATCAGGCAAAGGGCATCTCAAATCGGCTGTACCTGAAGGAGCAGTTTCACACGCTGCAAATGGAGGAAGGTATGAAAATTTCAGATCACCTGAGTAATCTCAATAGCATCATCTTTGAGCTAGAGGCGATCGAAGTGAAGATAGATGACGAAGATAAAGCACTCAGGCTCATCTTATCACTTCCACCTTCTTATGAACACATGAAGCCGATCTTGATGTATGGGAAGGATACTTTGAATTTTGCTGAGGTTACTAGTAAACTCTTGTTAGAGGAAAGAAGGTTGAAGAGTGAAGGGCGTATTTCACATGAAGATTCGGTACTGGTAGCTCGCAATTGGAAGAAAAAGAAAGACTCCGTACAAAAGAAAGCTTGTTGCTGGGGATGGGGACAGTCTGGACACATGAAGAAAGATTGTCCCAACAGAGCCGGTTCGTCAAAGGGCTTTGGGCGGGATGCTGACAATGTTTCTCTCATCAGGGGAGACGATGATCATATCCTTTGA

Protein sequence

MRGFVTWGVTPRHPSSSSSRVGECEEWCYHKHDLETQEDSEEDVVVVFVGNRRRKVLQSYFLLIPVVEVGDFFLTSGFRALVKIDVEKFDGRINFDLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPMESSGGSSRGSKKSSMSDEDWEEMDLRAASAIQTSLAKNILANVHGISTAKELWEKLEALYQAKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMKPILMYGKDTLNFAEVTSKLLLEERRLKSEGRISHEDSVLVARNWKKKKDSVQKKACCWGWGQSGHMKKDCPNRAGSSKGFGRDADNVSLIRGDDDHIL

Homology

[Close]

BLAST of Moc05g11770 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 462.2 bits (1188), Expect = 4.0e-126
Identity = 242/260 (93.08%), Postives = 244/260 (93.85%), Query Frame = 0


Query: 76  SGFRALVKIDVEKFDGRINFDLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPME 135
           S F + VKIDVEKFDG INF LWQVQVKDVLIQS LHKALKGRPSEGASEKLS DGGPME
Sbjct: 296 SFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPME 355

Query: 136 SSGGSSRGSKKSSMSDEDWEEMDLRAASAIQTSLAKNILANVHGISTAKELWEKLEALYQ 195
           SSGGSSRGSKKSSMS EDWEEMDLRAASAI+TSLAKNILANVH ISTAKELWEKLEALYQ
Sbjct: 356 SSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQ 415

Query: 196 AKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLP 255
           AKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLP
Sbjct: 416 AKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLP 475

Query: 256 PSYEHMKPILMYGKDTLNFAEVTSKLLLEERRLKSEGRISHEDSVLVARNWKKKKDSVQK 315
            SYEHMKPILMYGKDTLNFAEVTSKLL EERRLKSEGR SHEDS LV  NWKKKKDSVQK
Sbjct: 476 XSYEHMKPILMYGKDTLNFAEVTSKLLSEERRLKSEGRTSHEDSALVVSNWKKKKDSVQK 535

Query: 316 KACCWGWGQSGHMKKDCPNR 336
           KACCWG GQSGHMKKDCPNR
Sbjct: 536 KACCWGCGQSGHMKKDCPNR 555

[Close]

BLAST of Moc05g11770 vs. NCBI nr
Match: KAF5765959.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 315.1 bits (806), Expect = 7.9e-82
Identity = 171/275 (62.18%), Postives = 206/275 (74.91%), Query Frame = 0


Query: 82  VKIDVEKFDGRINFDLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPMESSGGSS 141
           ++ DVEK+DGRINF LWQVQVKDVLIQSGLHKAL+G+P+  +S+  SG            
Sbjct: 7   MRFDVEKYDGRINFGLWQVQVKDVLIQSGLHKALRGKPTPVSSKDSSG------------ 66

Query: 142 RGSKKSSMSDEDWEEMDLRAASAIQTSLAKNILANVHGISTAKELWEKLEALYQAKGISN 201
                S   DE+WE++DLRAASAI+  LAKN+LANVHGISTAK+LWEKLE LYQ KGI N
Sbjct: 67  ----TSKDDDEEWEDLDLRAASAIRLCLAKNVLANVHGISTAKDLWEKLEQLYQGKGIPN 126

Query: 202 RLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHM 261
           RLYLKEQFHTL+M+   KISDHLS LN+I+ ELEAI VK++DEDKALRLILSL  SYEHM
Sbjct: 127 RLYLKEQFHTLRMDGDTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILSLTSSYEHM 186

Query: 262 KPILMYGKDTLNFAEVTSKLLLEERRLKSEGRISHEDSVLVARNWKKKKDSVQKKACCWG 321
           KPILMYGK+TL +A+VT KLL EE+RL S G  S E +VL+  N KKK    QK   CW 
Sbjct: 187 KPILMYGKETLKYADVTEKLLSEEKRLGSSGHTSSEGTVLICGNGKKKHP--QKIPVCWK 246

Query: 322 WGQSGHMKKDCPNRAGSSKGFGRDADNVSLIRGDD 357
            GQSGH+K++CP  A S+    + A+NV+++ GDD
Sbjct: 247 CGQSGHVKRNCPGGADSASS-SKTANNVAVVDGDD 262

[Close]

BLAST of Moc05g11770 vs. NCBI nr
Match: KAF5758504.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 313.9 bits (803), Expect = 1.8e-81
Identity = 171/271 (63.10%), Postives = 204/271 (75.28%), Query Frame = 0


Query: 86  VEKFDGRINFDLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPMESSGGSSRGSK 145
           VEK+DGRINF LWQVQVKDVLIQSGLHKAL+G+P+  +S+  SG                
Sbjct: 11  VEKYDGRINFGLWQVQVKDVLIQSGLHKALRGKPTPVSSKDSSG---------------- 70

Query: 146 KSSMSDEDWEEMDLRAASAIQTSLAKNILANVHGISTAKELWEKLEALYQAKGISNRLYL 205
            S   DE+WE++DLRAASAI+  LAKN+LANVHGISTAK+LWEKLE LYQ KGISNRLYL
Sbjct: 71  TSKDDDEEWEDLDLRAASAIRLCLAKNVLANVHGISTAKDLWEKLEQLYQGKGISNRLYL 130

Query: 206 KEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMKPIL 265
           KEQFHTL+M+   KISDHLS LN+I+ ELEAI VK++DEDKALRLILSL  SYEHMKPIL
Sbjct: 131 KEQFHTLRMDGDTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILSLTSSYEHMKPIL 190

Query: 266 MYGKDTLNFAEVTSKLLLEERRLKSEGRISHEDSVLVARNWKKKKDSVQKKACCWGWGQS 325
           MYGK+TL +A+VT KLL EE+RL S G  S E +VL+  N KKK    QK   CW  GQS
Sbjct: 191 MYGKETLKYADVTEKLLSEEKRLGSSGHTSSEGTVLICGNGKKKHP--QKIPVCWKCGQS 250

Query: 326 GHMKKDCPNRAGSSKGFGRDADNVSLIRGDD 357
           GH+K++CP  A S+    + A+NV+++ GDD
Sbjct: 251 GHVKRNCPGGADSASN-SKTANNVAVVDGDD 262

[Close]

BLAST of Moc05g11770 vs. NCBI nr
Match: QHN81458.1 (Retrovirus-related Pol polyprotein [Arachis hypogaea])

HSP 1 Score: 309.3 bits (791), Expect = 4.4e-80
Identity = 167/282 (59.22%), Postives = 203/282 (71.99%), Query Frame = 0


Query: 76  SGFRALVKIDVEKFDGRINFDLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPME 135
           SG+ + VK+++EKFDGRINF LWQ+QVKDVLIQSGLHKALK        E++SG      
Sbjct: 2   SGYSSAVKLEIEKFDGRINFGLWQIQVKDVLIQSGLHKALK--------ERISG------ 61

Query: 136 SSGGSSRGSKKSSMSDEDWEEMDLRAASAIQTSLAKNILANVHGISTAKELWEKLEALYQ 195
                        M DE+WEE+DLRAASAI+  LAKN+LANV GI TAKELW+KLE LYQ
Sbjct: 62  -------------MKDEEWEELDLRAASAIRLCLAKNVLANVQGIKTAKELWDKLEGLYQ 121

Query: 196 AKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLP 255
           +KGISNRL LKEQFH L+M+  +KISDHLS +N I+ ELEAI VKIDDEDKALRLILSLP
Sbjct: 122 SKGISNRLLLKEQFHNLRMDHNVKISDHLSAINGIVSELEAIGVKIDDEDKALRLILSLP 181

Query: 256 PSYEHMKPILMYGKDTLNFAEVTSKLLLEERRLKSEGRISHEDSVLVARNWKKKKDSVQK 315
            SYE++KP+LMYGK+TLNF EV SKL+ EERR+K+EG  S  D  LVAR+    K +  +
Sbjct: 182 SSYEYIKPVLMYGKETLNFEEVASKLIAEERRMKNEGSTS-SDLALVARSDNYGKGNRGR 241

Query: 316 KACCWGWGQSGHMKKDCPNRAGSSKGFGRDADNVSLIRGDDD 358
              CW  G+SGH+K++CP  A S K    D  N++L   +DD
Sbjct: 242 SVTCWKCGKSGHVKRNCPGNAVSEKDSQSDTCNIALSMREDD 255

[Close]

BLAST of Moc05g11770 vs. NCBI nr
Match: KAF5463231.1 (hypothetical protein F2P56_019161 [Juglans regia])

HSP 1 Score: 306.6 bits (784), Expect = 2.8e-79
Identity = 171/283 (60.42%), Postives = 201/283 (71.02%), Query Frame = 0


Query: 82  VKIDVEKFDGRINFDLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPMESSGGSS 141
           ++ +VEKFDGRINF LWQVQVKDVLIQSGLHKALKGRP+   S   S           + 
Sbjct: 10  IRYEVEKFDGRINFGLWQVQVKDVLIQSGLHKALKGRPTPEVSSDTS----------VTD 69

Query: 142 RGSKKSSMSDEDWEEMDLRAASAIQTSLAKNILANVHGISTAKELWEKLEALYQAKGISN 201
           +   +S MSDEDWE++DLRAASAI+  LAKN+LAN+HGISTAK+LWEKLE LYQ KG+SN
Sbjct: 70  QTKSRSVMSDEDWEDLDLRAASAIRLCLAKNVLANIHGISTAKKLWEKLEELYQTKGVSN 129

Query: 202 RLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHM 261
           R+YLKEQFHTL M EG  ISDHLS LN I+ ELE+I VKIDDED+ALRLI SLP SYEHM
Sbjct: 130 RVYLKEQFHTLHMSEGTTISDHLSVLNGIVSELESIGVKIDDEDQALRLIWSLPSSYEHM 189

Query: 262 KPILMYGKDTLNFAEVTSKLLLEERRLKSEGRISHEDSVLVARNWKKKKDSVQKKACCWG 321
           KPIL++GK+ + F+EVTSKL  EERRL         +  +V     KKK+S++ K  CWG
Sbjct: 190 KPILIHGKEKIIFSEVTSKLFSEERRLGGGRNGPPVNLAMVVAGNGKKKNSMKMKVVCWG 249

Query: 322 WGQSGHMKKDCP----NRAGSSKGFGRDADN----VSLIRGDD 357
            GQSGH+KK+CP      A  SK    D DN    VSL   DD
Sbjct: 250 CGQSGHVKKNCPRTGAGSASGSKSVNGDTDNETNVVSLSMEDD 282

[Close]

BLAST of Moc05g11770 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.9e-38
Identity = 100/297 (33.67%), Postives = 155/297 (52.19%), Query Frame = 0


Query: 82  VKIDVEKFDGRINFDLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPMESSGGSS 141
           VK +V KF+G   F  WQ +++D+LIQ GLHK L                          
Sbjct: 4   VKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVL------------------------DV 63

Query: 142 RGSKKSSMSDEDWEEMDLRAASAIQTSLAKNILANVHGISTAKELWEKLEALYQAKGISN 201
              K  +M  EDW ++D RAASAI+  L+ +++ N+    TA+ +W +LE+LY +K ++N
Sbjct: 64  DSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTN 123

Query: 202 RLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHM 261
           +LYLK+Q + L M EG     HL+  N +I +L  + VKI++EDKA+ L+ SLP SY+++
Sbjct: 124 KLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNL 183

Query: 262 KPILMYGKDTLNFAEVTSKLLLEERRLK------------SEGRISHEDSVLVARN---W 321
              +++GK T+   +VTS LLL E+  K              GR     S    R+    
Sbjct: 184 ATTILHGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARG 243

Query: 322 KKKKDSVQKKACCWGWGQSGHMKKDCPN---RAGSSKGFGRDADNVSLIRGDDDHIL 361
           K K  S  +   C+   Q GH K+DCPN     G + G   D +  ++++ +D+ +L
Sbjct: 244 KSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVL 276

[Close]

BLAST of Moc05g11770 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 72.8 bits (177), Expect = 9.0e-12
Identity = 63/270 (23.33%), Postives = 124/270 (45.93%), Query Frame = 0


Query: 83  KIDVEKFDGRINFDLWQVQVKDVLIQSGLHKALKG-RPSEGASEKLSGDGGPMESSGGSS 142
           K +++ FDG   + +W+ +++ +L +  + K + G  P+E                    
Sbjct: 5   KRNIKPFDGE-KYAIWKFRIRALLAEQDVLKVVDGLMPNE-------------------- 64

Query: 143 RGSKKSSMSDEDWEEMDLRAASAIQTSLAKNILANVHGISTAKELWEKLEALYQAKGISN 202
                    D+ W++ +  A S I   L+ + L       TA+++ E L+A+Y+ K +++
Sbjct: 65  --------VDDSWKKAERCAKSTIIEYLSDSFLNFATSDITARQILENLDAVYERKSLAS 124

Query: 203 RLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEH- 262
           +L L+++  +L++   M +  H    + +I EL A   KI++ DK   L+++LP  Y+  
Sbjct: 125 QLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGI 184

Query: 263 MKPILMYGKDTLNFAEVTSKLLLEERRLKSE---------GRISHEDSVLVARNWKKK-- 322
           +  I    ++ L  A V ++LL +E ++K++           I H ++     N  K   
Sbjct: 185 ITAIETLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRV 244

Query: 323 -------KDSVQKKACCWGWGQSGHMKKDC 333
                  K + + K  C   G+ GH+KKDC
Sbjct: 245 TKPKKIFKGNSKYKVKCHHCGREGHIKKDC 245

[Close]

BLAST of Moc05g11770 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.9e-126
Identity = 242/260 (93.08%), Postives = 244/260 (93.85%), Query Frame = 0


Query: 76  SGFRALVKIDVEKFDGRINFDLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPME 135
           S F + VKIDVEKFDG INF LWQVQVKDVLIQS LHKALKGRPSEGASEKLS DGGPME
Sbjct: 296 SFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPME 355

Query: 136 SSGGSSRGSKKSSMSDEDWEEMDLRAASAIQTSLAKNILANVHGISTAKELWEKLEALYQ 195
           SSGGSSRGSKKSSMS EDWEEMDLRAASAI+TSLAKNILANVH ISTAKELWEKLEALYQ
Sbjct: 356 SSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQ 415

Query: 196 AKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLP 255
           AKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLP
Sbjct: 416 AKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLP 475

Query: 256 PSYEHMKPILMYGKDTLNFAEVTSKLLLEERRLKSEGRISHEDSVLVARNWKKKKDSVQK 315
            SYEHMKPILMYGKDTLNFAEVTSKLL EERRLKSEGR SHEDS LV  NWKKKKDSVQK
Sbjct: 476 XSYEHMKPILMYGKDTLNFAEVTSKLLSEERRLKSEGRTSHEDSALVVSNWKKKKDSVQK 535

Query: 316 KACCWGWGQSGHMKKDCPNR 336
           KACCWG GQSGHMKKDCPNR
Sbjct: 536 KACCWGCGQSGHMKKDCPNR 555

[Close]

BLAST of Moc05g11770 vs. ExPASy TrEMBL
Match: A0A6A3BK59 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110050pilonHSYRG00143 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 3.0e-79
Identity = 172/280 (61.43%), Postives = 208/280 (74.29%), Query Frame = 0


Query: 83  KIDVEKFDGRINFDLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPMESSGGSSR 142
           + D+EKFDGRINF LWQVQVKD+LIQSGL+KALKG+P+   SE    D  P +SSG    
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPA-SLSEGKEPD-KPSDSSGDKG- 63

Query: 143 GSKKSSMSDEDWEEMDLRAASAIQTSLAKNILANVHGISTAKELWEKLEALYQAKGISNR 202
              KS MS+E+WEE+D+RAAS I+  LAKN+LANV   S+ KELWEKLE +YQAK +SNR
Sbjct: 64  ---KSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNR 123

Query: 203 LYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMK 262
           LYLKE+FH LQMEEG KISDHLS LN I+ ELE+I V+IDDEDKALRLI SLP SYEHM+
Sbjct: 124 LYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLPSSYEHMQ 183

Query: 263 PILMYGKDTLNFAEVTSKLLLEERRLKS-EGRISHEDSVLVARNWKKKKDSVQKKACCWG 322
            +LMYGK+ +NF+EVTSKL+ EERRLK+ E + S   ++ V  N KK K S +KK  CWG
Sbjct: 184 TVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKGS-KKKIICWG 243

Query: 323 WGQSGHMKKDCPN-RAGSSKGFGRDADNVSLIRGDDDHIL 361
            GQ GH+KKDC N  A S+ G   DA NV +   +DD  +
Sbjct: 244 CGQPGHLKKDCKNGGANSANGSKSDATNVVVFENEDDEFV 276

[Close]

BLAST of Moc05g11770 vs. ExPASy TrEMBL
Match: A0A6A2YS90 (Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111273pilonHSYRG00172 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.5e-78
Identity = 172/282 (60.99%), Postives = 208/282 (73.76%), Query Frame = 0


Query: 81  LVKIDVEKFDGRINFDLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPMESSGGS 140
           L + D+EKFDGRINF LWQVQVKD+LIQSGL+KALKG+P+   SE    D  P +SSG  
Sbjct: 88  LKRFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPA-SLSEGKEPD-KPSDSSGDK 147

Query: 141 SRGSKKSSMSDEDWEEMDLRAASAIQTSLAKNILANVHGISTAKELWEKLEALYQAKGIS 200
                KS MS+E+WEE+D+RAAS I+  LAKN+LANV   S+ KELWEKLE +YQAK +S
Sbjct: 148 G----KSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLS 207

Query: 201 NRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEH 260
           NRLYLKE+FH LQMEEG KISDHLS LN I+ ELE+I V+IDDEDKALRLI SL  SYEH
Sbjct: 208 NRLYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLSSSYEH 267

Query: 261 MKPILMYGKDTLNFAEVTSKLLLEERRLKS-EGRISHEDSVLVARNWKKKKDSVQKKACC 320
           M+ +LMYGK+ +NF+EVTSKL+ EERRLK+ E + S   ++ V  N KK K S +KK  C
Sbjct: 268 MQTVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKGS-KKKIIC 327

Query: 321 WGWGQSGHMKKDCPN-RAGSSKGFGRDADNVSLIRGDDDHIL 361
           WG GQ GH+KKDC N  A S+ G   DA NV +   +DD  +
Sbjct: 328 WGCGQPGHLKKDCKNGGANSANGSKSDATNVVVFENEDDEFV 362

[Close]

BLAST of Moc05g11770 vs. ExPASy TrEMBL
Match: A0A6A3CWI3 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001713pilonHSYRG00162 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 2.6e-78
Identity = 171/280 (61.07%), Postives = 206/280 (73.57%), Query Frame = 0


Query: 83  KIDVEKFDGRINFDLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPMESSGGSSR 142
           + D+EKFDGRINF LWQVQVKD+LIQSGL+KALKG+P+   SE    D  P +SSG    
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPA-SLSEGKEPD-KPSDSSGDKG- 63

Query: 143 GSKKSSMSDEDWEEMDLRAASAIQTSLAKNILANVHGISTAKELWEKLEALYQAKGISNR 202
              KS MS+E+WEE+D+RAAS I+  LAKN+LANV   S+ KELWEKLE +YQAK +SNR
Sbjct: 64  ---KSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNR 123

Query: 203 LYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMK 262
           LYLKE+FH LQMEEG KISDHLS LN I+ ELE+I V IDDEDKALRLI SLP SYEHM+
Sbjct: 124 LYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVDIDDEDKALRLIWSLPSSYEHMQ 183

Query: 263 PILMYGKDTLNFAEVTSKLLLEERRLKS-EGRISHEDSVLVARNWKKKKDSVQKKACCWG 322
            +LMYGK+ +NF+EVTSKL+ EERRLK+ E + S   ++ V  N KK K S +KK  CWG
Sbjct: 184 TVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKGS-KKKIICWG 243

Query: 323 WGQSGHMKKDCPN-RAGSSKGFGRDADNVSLIRGDDDHIL 361
            GQ GH+KKDC N  A  + G   DA NV +   +DD  +
Sbjct: 244 CGQPGHLKKDCKNGGANLANGSKSDATNVVVFENEDDEFV 276

[Close]

BLAST of Moc05g11770 vs. ExPASy TrEMBL
Match: A0A6A3DA47 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000132pilonHSYRG00093 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 9.8e-78
Identity = 164/276 (59.42%), Postives = 199/276 (72.10%), Query Frame = 0


Query: 83  KIDVEKFDGRINFDLWQVQVKDVLIQSGLHKALKGRPSEGASEKLSGDGGPMESSGGSSR 142
           + D+EKFDGRINF LWQVQVKD+LIQSGL+KALKG+P+         +G   +    SS 
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPAS------LFEGKEPDKPSDSSG 63

Query: 143 GSKKSSMSDEDWEEMDLRAASAIQTSLAKNILANVHGISTAKELWEKLEALYQAKGISNR 202
              KS MS+E+WEE+D+RAAS I+  LAKN+LANV   S+ KELWEKLE +YQAK +SNR
Sbjct: 64  DKGKSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNR 123

Query: 203 LYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPPSYEHMK 262
           LYLKE+FH LQMEEG KISDHLS LN I+ ELE+I V+IDDEDKALRLI SLP SYEHM+
Sbjct: 124 LYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLPSSYEHMQ 183

Query: 263 PILMYGKDTLNFAEVTSKLLLEERRLKSEGRISHEDSVLVARNWKKKKDSVQKKACCWGW 322
            +LMYGK+ +NF+EVTSKL+ EERRLK+    S E   L     +KK    ++K  CWG 
Sbjct: 184 TVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVFGNRKKYKGSKRKIICWGC 243

Query: 323 GQSGHMKKDCPN-RAGSSKGFGRDADNVSLIRGDDD 358
           GQ GH+KKDC N  A S+ G   DA NV +   +DD
Sbjct: 244 GQPGHLKKDCKNGGANSANGSKSDATNVVVFENEDD 273

The following BLAST results are available for this feature:

BLAST of Moc05g11770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	4.0e-126	93.08	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
KAF5765959.1	7.9e-82	62.18	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
KAF5758504.1	1.8e-81	63.10	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
QHN81458.1	4.4e-80	59.22	Retrovirus-related Pol polyprotein [Arachis hypogaea]	[more]
KAF5463231.1	2.8e-79	60.42	hypothetical protein F2P56_019161 [Juglans regia]	[more]

BLAST of Moc05g11770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.9e-38	33.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	9.0e-12	23.33	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Moc05g11770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	1.9e-126	93.08	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6A3BK59	3.0e-79	61.43	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A6A2YS90	1.5e-78	60.99	Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=...	[more]
A0A6A3CWI3	2.6e-78	61.07	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A6A3DA47	9.8e-78	59.42	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]

BLAST of Moc05g11770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 154..290 e-value: 1.0E-35 score: 122.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..152
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 82..322
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 82..322

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g11770.1	Moc05g11770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044271	cellular nitrogen compound biosynthetic process
biological_process	GO:0044267	cellular protein metabolic process
biological_process	GO:0010467	gene expression
biological_process	GO:0009059	macromolecule biosynthetic process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008270	zinc ion binding