Moc05g11660 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g11660
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr5: 9065569 .. 9066667 (-)
RNA-Seq Expression	Moc05g11660
Synteny	Moc05g11660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAGCCAGCAAACTCTGCTAATACGACAGAACGGAGAGCAGTAACAACGACACTCAACGTGAGCTCGAGGCCAAACTGTCGAGGACCGGGCGCCCAGGTAGGACAGGAGGGAGATCTACCATGGAGATCTACTCGTCACGTGAACCAGGAGTTACCTCCTACCCACTGCAGAGCTGCTAAAACCAATCGAGGTCAAGGTAGGACCTCAAAAAAGACCTCCCAAAGGGCTGCCCCAGTCGCGGACCCTAAAGTTCTGGCTACCCTCAAACGAGAGTTGGACGACATGTGCAATCGAGGTGCGCACTATGGAGGAGATGTATACTGAGATGACACGGGCCAACCGGACAGGATCTCCCTCCAAAGTCTCAGGCGGGGACGATATGCCTGAAGATGGGCAGGATCAAGATCCACCACTCCACCTTGATGATCGTGAGCCCATCGCCAATAACGAATAGATTAACTATAGCCTGAGAGATCACGATCTCAGGAAGCACCTCGTCGACAAGAAGAGGAAGGCCTCAAGGGGTCTCGGGGACTCTTCGTCCTACTCTAGAGGATACTCAAACTCTGACCTCAAAGCTCAGTCCAAGTACACACATTTAACACCGGAGGCCATAATTACAAGGGAAGAGTTTGACCTGATGAAACATAGGTTTGATGAGCAGGTCGAGGCATTGAAAGCTAAATGCGAGAAAAAGGAGAGCCCGTTCGATGATGGCGAGATGGGTGAGTCGTCATTCACTTCGGATGTCTTGGAGGCCCCTATTCCTCCAAAGTTCAAAACACCCGTCATAAAGCCTGATGATGGGTCTAAGAACCCAAAGGACTATGTTGAGGTCTTTGAAGGCCTCATGGACTTCCAAGCAGCATCAGATGCCATCAAGTGCCGAGCTTTTCAGATCGCCCTCACAGGGAGTGCTCGACTTTGGTACCGTAAGCTGCCAGCAAGGTCGATCTCGACCTACAGTCAGTTGAGGAAAGAATTCATTAGTCAATTCTCTTCTCGGCATTACGACAGGAGAATAGCTACTCATCTCGCCACCATCCGACATAAAGAAGGCGAGACTTTAAGGGAATACGTGACCCGCTTCTAG

mRNA sequence

ATGGTGCAGCCAGCAAACTCTGCTAATACGACAGAACGGAGAGCAGTAACAACGACACTCAACGTGAGCTCGAGGCCAAACTGTCGAGGACCGGGCGCCCAGGTAGGACAGGAGGGAGATCTACCATGGAGATCTACTCGTCACGTGAACCAGGAGTTACCTCCTACCCACTGCAGAGCTGCTAAAACCAATCGAGGTCAAGGTAGGACCTCAAAAAAGACCTCCCAAAGGGCTGCCCCAGTCGCGGACCCTAAAGTTCTGGCTACCCTCAAACGAGAGTTGGACGACATGTGCAATCGAGGTGCGCACTATGGAGGAGATATTAACTATAGCCTGAGAGATCACGATCTCAGGAAGCACCTCGTCGACAAGAAGAGGAAGGCCTCAAGGGGTCTCGGGGACTCTTCGTCCTACTCTAGAGGATACTCAAACTCTGACCTCAAAGCTCAGTCCAAGTACACACATTTAACACCGGAGGCCATAATTACAAGGGAAGAGTTTGACCTGATGAAACATAGGTTTGATGAGCAGGTCGAGGCATTGAAAGCTAAATGCGAGAAAAAGGAGAGCCCGTTCGATGATGGCGAGATGGGTGAGTCGTCATTCACTTCGGATGTCTTGGAGGCCCCTATTCCTCCAAAGTTCAAAACACCCGTCATAAAGCCTGATGATGGGTCTAAGAACCCAAAGGACTATGTTGAGGTCTTTGAAGGCCTCATGGACTTCCAAGCAGCATCAGATGCCATCAAGTGCCGAGCTTTTCAGATCGCCCTCACAGGGAGTGCTCGACTTTGGTACCGTAAGCTGCCAGCAAGGTCGATCTCGACCTACAGTCAGTTGAGGAAAGAATTCATTAGTCAATTCTCTTCTCGGCATTACGACAGGAGAATAGCTACTCATCTCGCCACCATCCGACATAAAGAAGGCGAGACTTTAAGGGAATACGTGACCCGCTTCTAG

Coding sequence (CDS)

ATGGTGCAGCCAGCAAACTCTGCTAATACGACAGAACGGAGAGCAGTAACAACGACACTCAACGTGAGCTCGAGGCCAAACTGTCGAGGACCGGGCGCCCAGGTAGGACAGGAGGGAGATCTACCATGGAGATCTACTCGTCACGTGAACCAGGAGTTACCTCCTACCCACTGCAGAGCTGCTAAAACCAATCGAGGTCAAGGTAGGACCTCAAAAAAGACCTCCCAAAGGGCTGCCCCAGTCGCGGACCCTAAAGTTCTGGCTACCCTCAAACGAGAGTTGGACGACATGTGCAATCGAGGTGCGCACTATGGAGGAGATATTAACTATAGCCTGAGAGATCACGATCTCAGGAAGCACCTCGTCGACAAGAAGAGGAAGGCCTCAAGGGGTCTCGGGGACTCTTCGTCCTACTCTAGAGGATACTCAAACTCTGACCTCAAAGCTCAGTCCAAGTACACACATTTAACACCGGAGGCCATAATTACAAGGGAAGAGTTTGACCTGATGAAACATAGGTTTGATGAGCAGGTCGAGGCATTGAAAGCTAAATGCGAGAAAAAGGAGAGCCCGTTCGATGATGGCGAGATGGGTGAGTCGTCATTCACTTCGGATGTCTTGGAGGCCCCTATTCCTCCAAAGTTCAAAACACCCGTCATAAAGCCTGATGATGGGTCTAAGAACCCAAAGGACTATGTTGAGGTCTTTGAAGGCCTCATGGACTTCCAAGCAGCATCAGATGCCATCAAGTGCCGAGCTTTTCAGATCGCCCTCACAGGGAGTGCTCGACTTTGGTACCGTAAGCTGCCAGCAAGGTCGATCTCGACCTACAGTCAGTTGAGGAAAGAATTCATTAGTCAATTCTCTTCTCGGCATTACGACAGGAGAATAGCTACTCATCTCGCCACCATCCGACATAAAGAAGGCGAGACTTTAAGGGAATACGTGACCCGCTTCTAG

Protein sequence

MVQPANSANTTERRAVTTTLNVSSRPNCRGPGAQVGQEGDLPWRSTRHVNQELPPTHCRAAKTNRGQGRTSKKTSQRAAPVADPKVLATLKRELDDMCNRGAHYGGDINYSLRDHDLRKHLVDKKRKASRGLGDSSSYSRGYSNSDLKAQSKYTHLTPEAIITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGESSFTSDVLEAPIPPKFKTPVIKPDDGSKNPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRKLPARSISTYSQLRKEFISQFSSRHYDRRIATHLATIRHKEGETLREYVTRF

Homology

[Close]

BLAST of Moc05g11660 vs. NCBI nr
Match: XP_022155139.1 (uncharacterized protein LOC111022280 [Momordica charantia])

HSP 1 Score: 328.2 bits (840), Expect = 8.0e-86
Identity = 166/205 (80.98%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 108 INYSLRDHDLRKHLVDKKRKASRGLGDSSSYSRGYSNSDLKAQSKYTHLTPEAIITREEF 167
           ++YSLRD+DLRKHL DKK+KAS    DS SYSR +SNS+LKAQSKY  L PEA+I REEF
Sbjct: 30  VDYSLRDNDLRKHLTDKKKKASWEPEDSLSYSREFSNSNLKAQSKYKPLIPEAVINREEF 89

Query: 168 DLMKHRFDEQVEALKAKCEKKESPFDDGEMGESSFTSDVLEAPIPPKFKTPVIKPDDGSK 227
           DLMKHRFDEQVEALKA+CEKKESPFDD ++GES FTSD++EAPIPPKFKTP +KP DGSK
Sbjct: 90  DLMKHRFDEQVEALKARCEKKESPFDDDDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSK 149

Query: 228 NPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRKLPARSISTYSQLRKEFISQ 287
           +PKDYVEVFEGLMDFQAA+DAIKC AFQIALTGSARLW R+LPARSISTYSQLRKEFI Q
Sbjct: 150 DPKDYVEVFEGLMDFQAATDAIKCLAFQIALTGSARLWCRRLPARSISTYSQLRKEFIGQ 209

Query: 288 FSSRHYDRRIATHLATIRHKEGETL 313
           FS RHYDR+ ATHLATIR KE ETL
Sbjct: 210 FSFRHYDRKTATHLATIRQKEDETL 234

[Close]

BLAST of Moc05g11660 vs. NCBI nr
Match: XP_022157897.1 (uncharacterized protein LOC111024503 [Momordica charantia])

HSP 1 Score: 317.8 bits (813), Expect = 1.1e-82
Identity = 162/193 (83.94%), Postives = 173/193 (89.64%), Query Frame = 0


Query: 127 KASRGLGDSSSYSRGYSNSDLKAQSKYTHLTPEAIITREEFDLMKHRFDEQVEALKAKCE 186
           +ASR   DS SYSR +SNSD KAQSKY  LTPEA+ITREEFDLMKHRFDEQVEALKAKCE
Sbjct: 468 RASRESEDSPSYSREFSNSDFKAQSKYKPLTPEAVITREEFDLMKHRFDEQVEALKAKCE 527

Query: 187 KKESPFDDGEMGESSFTSDVLEAPIPPKFKTPVIKPDDGSKNPKDYVEVFEGLMDFQAAS 246
           KKE  FDDG++GES FTSD+LE PIPPKFKTP +K  D SK+PKDYVEVFEGLMDFQAA+
Sbjct: 528 KKECSFDDGDLGESPFTSDILEVPIPPKFKTPTMKLYDRSKDPKDYVEVFEGLMDFQAAT 587

Query: 247 DAIKCRAFQIALTGSARLWYRKLPARSISTYSQLRKEFISQFSSRHYDRRIATHLATIRH 306
           DAIKC AFQIALTGSARLWYR+LPARSISTYSQLRKEFISQF SRHYDR+ ATHLATIR 
Sbjct: 588 DAIKCSAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFFSRHYDRKTATHLATIRQ 647

Query: 307 KEGETLREYVTRF 320
           KEGETLREYVTRF
Sbjct: 648 KEGETLREYVTRF 660

[Close]

BLAST of Moc05g11660 vs. NCBI nr
Match: XP_022159327.1 (uncharacterized protein LOC111025738 [Momordica charantia])

HSP 1 Score: 298.5 bits (763), Expect = 6.8e-77
Identity = 186/342 (54.39%), Postives = 226/342 (66.08%), Query Frame = 0


Query: 1   MVQPANSANTTERRAVTTTLNVSSRPNCRGPGAQV--GQ----EGDLPW-RSTRHVNQEL 60
           MVQP +S NT +RRA+     V++  + R  GA+V  GQ     G  P+ RS R    +L
Sbjct: 1   MVQPVDSTNTGDRRAL-----VANDGHQREVGAEVVEGQIHEGLGTEPFCRSARITTPDL 60

Query: 61  PPTHCRAAKTNRGQGRTSKKTSQRAAPVADPKVLATLKRE----------LDDMCNRGAH 120
            P H +  K NRG+G  S++T+  AAP    +    L++E          +++M N    
Sbjct: 61  SPAHPKPFKANRGRGGASRRTTLGAAPAPSRENFDALQKEMEAMRTQMLTMEEMYNEMVQ 120

Query: 121 YGG----DINYSLRDH--DLRKHLVDKKRKASRGLGDSSSYSRGYSNSDLKAQSKYTHLT 180
             G      + + RD   DLR HL    RK S  L    S S  + NS+ +A+S Y  + 
Sbjct: 121 AVGAGSRSEDRAARDERGDLRDHL---SRKRSSSLRKGRSPSCSHKNSNQQAESSYNPVV 180

Query: 181 PEAIITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGESSFTSDVLEAPIPPKFKT 240
           PE +ITREEFD +K +FD QVE LKA+CE K S FDDG++GES FTSD+LEA IP KFKT
Sbjct: 181 PEGVITREEFDQLKSKFDAQVETLKARCEVKGSTFDDGDLGESPFTSDILEALIPSKFKT 240

Query: 241 PVIKPDDGSKNPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRKLPARSISTY 300
           P +KP DGSK+PKDYVEVFEGLM FQAA+DAIK RAFQIALT SARLWYR+LPARSISTY
Sbjct: 241 PTMKPYDGSKDPKDYVEVFEGLMGFQAATDAIKYRAFQIALTSSARLWYRRLPARSISTY 300

Query: 301 SQLRKEFISQFSSRHYDRRIATHLATIRHKEGETLREYVTRF 320
           SQLRKEF SQFSSRHY+R+ ATHLATIR KE ETLREYVT F
Sbjct: 301 SQLRKEFNSQFSSRHYERKTATHLATIRQKERETLREYVTWF 334

[Close]

BLAST of Moc05g11660 vs. NCBI nr
Match: XP_022151719.1 (uncharacterized protein LOC111019634 [Momordica charantia])

HSP 1 Score: 297.7 bits (761), Expect = 1.2e-76
Identity = 157/215 (73.02%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 105 GGDINYSLRDHDLRKHLVDKKRKASRGLGDSSSYSRGYSNSDLKAQSKYTHLTPEAIITR 164
           G D  Y+ +  DLR+HL ++KR +S   G S S S  + NS+ +A+S Y  +TPE +ITR
Sbjct: 53  GEDEEYTHQRGDLREHL-NRKRSSSLRKGQSPSCS--HRNSNQQAESSYNPITPEGVITR 112

Query: 165 EEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGESSFTSDVLEAPIPPKFKTPVIKPDD 224
           EEFD +K +FD QVEALKAKCEKKES FDDG++GES FTSD+LEA IP KFKTP +KP D
Sbjct: 113 EEFDQLKSKFDAQVEALKAKCEKKESSFDDGDLGESPFTSDILEALIPLKFKTPTMKPYD 172

Query: 225 GSKNPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRKLPARSISTYSQLRKEF 284
           GSK+PKDYVEVFEGLMDFQAA+DAIKCR FQIALTGSARLWYR+LPARSISTYSQLRKEF
Sbjct: 173 GSKDPKDYVEVFEGLMDFQAATDAIKCRDFQIALTGSARLWYRRLPARSISTYSQLRKEF 232

Query: 285 ISQFSSRHYDRRIATHLATIRHKEGETLREYVTRF 320
           I QFSSRHYDR+ ATHL TIR KEGETLREYVTRF
Sbjct: 233 IIQFSSRHYDRKTATHLTTIRQKEGETLREYVTRF 264

[Close]

BLAST of Moc05g11660 vs. NCBI nr
Match: XP_022155128.1 (uncharacterized protein LOC111022267 [Momordica charantia])

HSP 1 Score: 293.1 bits (749), Expect = 2.9e-75
Identity = 152/215 (70.70%), Postives = 175/215 (81.40%), Query Frame = 0


Query: 105 GGDINYSLRDHDLRKHLVDKKRKASRGLGDSSSYSRGYSNSDLKAQSKYTHLTPEAIITR 164
           G D  Y+ +  DLR+HL    RK S  L    S S  + NS+ +A+S Y  +TP+ +ITR
Sbjct: 32  GEDEEYTHQRGDLREHL---NRKRSSSLRKGQSPSSSHRNSNQQAESSYNPITPKRVITR 91

Query: 165 EEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGESSFTSDVLEAPIPPKFKTPVIKPDD 224
           EEFD +K +FD QVEALKA CEKKES FDDG++GE  FT D+LEAPI PKFKTP +KP D
Sbjct: 92  EEFDQLKSKFDAQVEALKANCEKKESSFDDGDLGELPFTLDILEAPIHPKFKTPTMKPYD 151

Query: 225 GSKNPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRKLPARSISTYSQLRKEF 284
           GSKNPKDYV+VFEGLM+FQAA+DAIKCRAFQIA TGSARLWYR+LPARSISTYSQLRKEF
Sbjct: 152 GSKNPKDYVKVFEGLMNFQAATDAIKCRAFQIAFTGSARLWYRRLPARSISTYSQLRKEF 211

Query: 285 ISQFSSRHYDRRIATHLATIRHKEGETLREYVTRF 320
           ISQFSSR+YDR+ ATHLATIR K+GETLREYVTRF
Sbjct: 212 ISQFSSRYYDRKTATHLATIRQKKGETLREYVTRF 243

[Close]

BLAST of Moc05g11660 vs. ExPASy TrEMBL
Match: A0A6J1DPC9 (uncharacterized protein LOC111022280 OS=Momordica charantia OX=3673 GN=LOC111022280 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 3.9e-86
Identity = 166/205 (80.98%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 108 INYSLRDHDLRKHLVDKKRKASRGLGDSSSYSRGYSNSDLKAQSKYTHLTPEAIITREEF 167
           ++YSLRD+DLRKHL DKK+KAS    DS SYSR +SNS+LKAQSKY  L PEA+I REEF
Sbjct: 30  VDYSLRDNDLRKHLTDKKKKASWEPEDSLSYSREFSNSNLKAQSKYKPLIPEAVINREEF 89

Query: 168 DLMKHRFDEQVEALKAKCEKKESPFDDGEMGESSFTSDVLEAPIPPKFKTPVIKPDDGSK 227
           DLMKHRFDEQVEALKA+CEKKESPFDD ++GES FTSD++EAPIPPKFKTP +KP DGSK
Sbjct: 90  DLMKHRFDEQVEALKARCEKKESPFDDDDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSK 149

Query: 228 NPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRKLPARSISTYSQLRKEFISQ 287
           +PKDYVEVFEGLMDFQAA+DAIKC AFQIALTGSARLW R+LPARSISTYSQLRKEFI Q
Sbjct: 150 DPKDYVEVFEGLMDFQAATDAIKCLAFQIALTGSARLWCRRLPARSISTYSQLRKEFIGQ 209

Query: 288 FSSRHYDRRIATHLATIRHKEGETL 313
           FS RHYDR+ ATHLATIR KE ETL
Sbjct: 210 FSFRHYDRKTATHLATIRQKEDETL 234

[Close]

BLAST of Moc05g11660 vs. ExPASy TrEMBL
Match: A0A6J1DVR0 (uncharacterized protein LOC111024503 OS=Momordica charantia OX=3673 GN=LOC111024503 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 5.3e-83
Identity = 162/193 (83.94%), Postives = 173/193 (89.64%), Query Frame = 0


Query: 127 KASRGLGDSSSYSRGYSNSDLKAQSKYTHLTPEAIITREEFDLMKHRFDEQVEALKAKCE 186
           +ASR   DS SYSR +SNSD KAQSKY  LTPEA+ITREEFDLMKHRFDEQVEALKAKCE
Sbjct: 468 RASRESEDSPSYSREFSNSDFKAQSKYKPLTPEAVITREEFDLMKHRFDEQVEALKAKCE 527

Query: 187 KKESPFDDGEMGESSFTSDVLEAPIPPKFKTPVIKPDDGSKNPKDYVEVFEGLMDFQAAS 246
           KKE  FDDG++GES FTSD+LE PIPPKFKTP +K  D SK+PKDYVEVFEGLMDFQAA+
Sbjct: 528 KKECSFDDGDLGESPFTSDILEVPIPPKFKTPTMKLYDRSKDPKDYVEVFEGLMDFQAAT 587

Query: 247 DAIKCRAFQIALTGSARLWYRKLPARSISTYSQLRKEFISQFSSRHYDRRIATHLATIRH 306
           DAIKC AFQIALTGSARLWYR+LPARSISTYSQLRKEFISQF SRHYDR+ ATHLATIR 
Sbjct: 588 DAIKCSAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFFSRHYDRKTATHLATIRQ 647

Query: 307 KEGETLREYVTRF 320
           KEGETLREYVTRF
Sbjct: 648 KEGETLREYVTRF 660

[Close]

BLAST of Moc05g11660 vs. ExPASy TrEMBL
Match: A0A6J1DZJ1 (uncharacterized protein LOC111025738 OS=Momordica charantia OX=3673 GN=LOC111025738 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 3.3e-77
Identity = 186/342 (54.39%), Postives = 226/342 (66.08%), Query Frame = 0


Query: 1   MVQPANSANTTERRAVTTTLNVSSRPNCRGPGAQV--GQ----EGDLPW-RSTRHVNQEL 60
           MVQP +S NT +RRA+     V++  + R  GA+V  GQ     G  P+ RS R    +L
Sbjct: 1   MVQPVDSTNTGDRRAL-----VANDGHQREVGAEVVEGQIHEGLGTEPFCRSARITTPDL 60

Query: 61  PPTHCRAAKTNRGQGRTSKKTSQRAAPVADPKVLATLKRE----------LDDMCNRGAH 120
            P H +  K NRG+G  S++T+  AAP    +    L++E          +++M N    
Sbjct: 61  SPAHPKPFKANRGRGGASRRTTLGAAPAPSRENFDALQKEMEAMRTQMLTMEEMYNEMVQ 120

Query: 121 YGG----DINYSLRDH--DLRKHLVDKKRKASRGLGDSSSYSRGYSNSDLKAQSKYTHLT 180
             G      + + RD   DLR HL    RK S  L    S S  + NS+ +A+S Y  + 
Sbjct: 121 AVGAGSRSEDRAARDERGDLRDHL---SRKRSSSLRKGRSPSCSHKNSNQQAESSYNPVV 180

Query: 181 PEAIITREEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGESSFTSDVLEAPIPPKFKT 240
           PE +ITREEFD +K +FD QVE LKA+CE K S FDDG++GES FTSD+LEA IP KFKT
Sbjct: 181 PEGVITREEFDQLKSKFDAQVETLKARCEVKGSTFDDGDLGESPFTSDILEALIPSKFKT 240

Query: 241 PVIKPDDGSKNPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRKLPARSISTY 300
           P +KP DGSK+PKDYVEVFEGLM FQAA+DAIK RAFQIALT SARLWYR+LPARSISTY
Sbjct: 241 PTMKPYDGSKDPKDYVEVFEGLMGFQAATDAIKYRAFQIALTSSARLWYRRLPARSISTY 300

Query: 301 SQLRKEFISQFSSRHYDRRIATHLATIRHKEGETLREYVTRF 320
           SQLRKEF SQFSSRHY+R+ ATHLATIR KE ETLREYVT F
Sbjct: 301 SQLRKEFNSQFSSRHYERKTATHLATIRQKERETLREYVTWF 334

[Close]

BLAST of Moc05g11660 vs. ExPASy TrEMBL
Match: A0A6J1DDW5 (uncharacterized protein LOC111019634 OS=Momordica charantia OX=3673 GN=LOC111019634 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 5.6e-77
Identity = 157/215 (73.02%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 105 GGDINYSLRDHDLRKHLVDKKRKASRGLGDSSSYSRGYSNSDLKAQSKYTHLTPEAIITR 164
           G D  Y+ +  DLR+HL ++KR +S   G S S S  + NS+ +A+S Y  +TPE +ITR
Sbjct: 53  GEDEEYTHQRGDLREHL-NRKRSSSLRKGQSPSCS--HRNSNQQAESSYNPITPEGVITR 112

Query: 165 EEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGESSFTSDVLEAPIPPKFKTPVIKPDD 224
           EEFD +K +FD QVEALKAKCEKKES FDDG++GES FTSD+LEA IP KFKTP +KP D
Sbjct: 113 EEFDQLKSKFDAQVEALKAKCEKKESSFDDGDLGESPFTSDILEALIPLKFKTPTMKPYD 172

Query: 225 GSKNPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRKLPARSISTYSQLRKEF 284
           GSK+PKDYVEVFEGLMDFQAA+DAIKCR FQIALTGSARLWYR+LPARSISTYSQLRKEF
Sbjct: 173 GSKDPKDYVEVFEGLMDFQAATDAIKCRDFQIALTGSARLWYRRLPARSISTYSQLRKEF 232

Query: 285 ISQFSSRHYDRRIATHLATIRHKEGETLREYVTRF 320
           I QFSSRHYDR+ ATHL TIR KEGETLREYVTRF
Sbjct: 233 IIQFSSRHYDRKTATHLTTIRQKEGETLREYVTRF 264

[Close]

BLAST of Moc05g11660 vs. ExPASy TrEMBL
Match: A0A6J1DM55 (uncharacterized protein LOC111022267 OS=Momordica charantia OX=3673 GN=LOC111022267 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.4e-75
Identity = 152/215 (70.70%), Postives = 175/215 (81.40%), Query Frame = 0


Query: 105 GGDINYSLRDHDLRKHLVDKKRKASRGLGDSSSYSRGYSNSDLKAQSKYTHLTPEAIITR 164
           G D  Y+ +  DLR+HL    RK S  L    S S  + NS+ +A+S Y  +TP+ +ITR
Sbjct: 32  GEDEEYTHQRGDLREHL---NRKRSSSLRKGQSPSSSHRNSNQQAESSYNPITPKRVITR 91

Query: 165 EEFDLMKHRFDEQVEALKAKCEKKESPFDDGEMGESSFTSDVLEAPIPPKFKTPVIKPDD 224
           EEFD +K +FD QVEALKA CEKKES FDDG++GE  FT D+LEAPI PKFKTP +KP D
Sbjct: 92  EEFDQLKSKFDAQVEALKANCEKKESSFDDGDLGELPFTLDILEAPIHPKFKTPTMKPYD 151

Query: 225 GSKNPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRKLPARSISTYSQLRKEF 284
           GSKNPKDYV+VFEGLM+FQAA+DAIKCRAFQIA TGSARLWYR+LPARSISTYSQLRKEF
Sbjct: 152 GSKNPKDYVKVFEGLMNFQAATDAIKCRAFQIAFTGSARLWYRRLPARSISTYSQLRKEF 211

Query: 285 ISQFSSRHYDRRIATHLATIRHKEGETLREYVTRF 320
           ISQFSSR+YDR+ ATHLATIR K+GETLREYVTRF
Sbjct: 212 ISQFSSRYYDRKTATHLATIRQKKGETLREYVTRF 243

The following BLAST results are available for this feature:

BLAST of Moc05g11660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155139.1	8.0e-86	80.98	uncharacterized protein LOC111022280 [Momordica charantia]	[more]
XP_022157897.1	1.1e-82	83.94	uncharacterized protein LOC111024503 [Momordica charantia]	[more]
XP_022159327.1	6.8e-77	54.39	uncharacterized protein LOC111025738 [Momordica charantia]	[more]
XP_022151719.1	1.2e-76	73.02	uncharacterized protein LOC111019634 [Momordica charantia]	[more]
XP_022155128.1	2.9e-75	70.70	uncharacterized protein LOC111022267 [Momordica charantia]	[more]

BLAST of Moc05g11660 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g11660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPC9	3.9e-86	80.98	uncharacterized protein LOC111022280 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DVR0	5.3e-83	83.94	uncharacterized protein LOC111024503 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DZJ1	3.3e-77	54.39	uncharacterized protein LOC111025738 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DDW5	5.6e-77	73.02	uncharacterized protein LOC111019634 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DM55	1.4e-75	70.70	uncharacterized protein LOC111022267 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Moc05g11660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 254..319 e-value: 1.3E-10 score: 41.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g11660.1	Moc05g11660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity