Moc05g11600 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g11600
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr5: 9040538 .. 9041782 (+)
RNA-Seq Expression	Moc05g11600
Synteny	Moc05g11600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCGGCGCTCCAGAACCCTCATGGATGGACCCGATCGCGGACTTCATTAGGGGCAACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGACGGGCAGCTCGGTTCGTGGTCCGAGATGGGGCATTGTACCGACGTGGCCTTTCCCTGCCTCTGTTGAGATGCCTAACCCCTGAAGAGGGCCTGTACGTTCTCAGAGAGATCCACGAAGGAGTGTGCGGCAATCACTCAGGCGCCCGGTCGCTGTCAGCCAAAGTGATCCGACAAGGATACTATTGGCCGACCCTCAGCCAGGACGCCAAGAAGTTCGTTAGAACTTGCGACAATTGCCAACGCTACGGAACCATAATCCACCAACCTCCCGAGCTGCTCACCCCCATCTCGGCCCCGTGGCCATTCGCGCAGTGGGGGGTAGATATCATTGGTCCTTTCCCTTTGGGCAAGGGCCAGACCAAGTTCGCTGTGGTTGCTGTGGATTACTTCACCAAGTGGGTCGAGGCCGAAGCGCTCTCCCACATAACGGAATCCAGGGTCACGTCCTTCGTATGGACGAATATCATATGTCGCTTTGGTATACCACAGGCCGTAGTGACAGACAATGGGAAGCAGTTTGACAACGCCAAGTTCAAAGACTTTTGCAGCAAAATTGGCATAAGTCATCTCAGCTCGTCCCCCGCACATCCGCAAGCAAATGGGCAGGTGGAGGCGGTCAACAAGATCGTCAAGCGAGGCATCAAACTTAGACTGGACTCCAAGAAAGGCAGGTGGGTCGAGGAGCTACCAGAAGTTCTATGGTCGTACCGGACCACCCAACGGGGGTCGACGGGTGAGACCCCGTTCTCCCTGGCCTTCGGCTCCGAAGCTGTAGTCCCGGTTGAGATCGGCATGCCATCTGACAGAGTAGAGCATTACGAGCCTTCGACAAATGAGGAAGAGCTGCTCCTCAACCTCGACTTGTTAGAAGAAAGAAGAACAATGGCCCAGCTATGTCGGGCAGAATATCAGGGCAGGATGGCCAGACATTACAATGCTTGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAAGGCCCATTTGAGATCAAGGGCATAGTCCGACCTGGGACGTATGTATTGGCCGATCTGAAAGAAGATGTCCTCGCGCACCCGTGGAACGCGGAACACCTGAAGCGTTATTATCCTTGA

mRNA sequence

ATGGAGATCGGCGCTCCAGAACCCTCATGGATGGACCCGATCGCGGACTTCATTAGGGGCAACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGACGGGCAGCTCGGTTCGTGGTCCGAGATGGGGCATTGTACCGACGTGGCCTTTCCCTGCCTCTGTTGAGATGCCTAACCCCTGAAGAGGGCCTGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAAGGCCCATTTGAGATCAAGGGCATAGTCCGACCTGGGACGTATGTATTGGCCGATCTGAAAGAAGATGTCCTCGCGCACCCGTGGAACGCGGAACACCTGAAGCGTTATTATCCTTGA

Coding sequence (CDS)

ATGGAGATCGGCGCTCCAGAACCCTCATGGATGGACCCGATCGCGGACTTCATTAGGGGCAACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGACGGGCAGCTCGGTTCGTGGTCCGAGATGGGGCATTGTACCGACGTGGCCTTTCCCTGCCTCTGTTGAGATGCCTAACCCCTGAAGAGGGCCTGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAAGGCCCATTTGAGATCAAGGGCATAGTCCGACCTGGGACGTATGTATTGGCCGATCTGAAAGAAGATGTCCTCGCGCACCCGTGGAACGCGGAACACCTGAAGCGTTATTATCCTTGA

Protein sequence

MEIGAPEPSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGLSLPLLRCLTPEEGLRVQTHVGALDPAWEGPFEIKGIVRPGTYVLADLKEDVLAHPWNAEHLKRYYP

Homology

[Close]

BLAST of Moc05g11600 vs. NCBI nr
Match: XP_022143486.1 (uncharacterized protein LOC111013362 [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 2.8e-28
Identity = 73/117 (62.39%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGLSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRG SLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLRV--QTHVGALDPAWEGPFEIKGIVRPGTYVLADLKEDVLAHPWNAEHLKRY 116
           PEEGL V  + H G              ++R G Y    L +D        ++ +RY
Sbjct: 310 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQG-YYWPTLSQDAKKFVRTCDNCQRY 365

[Close]

BLAST of Moc05g11600 vs. NCBI nr
Match: XP_022158219.1 (protein NYNRIN-like [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 5.3e-27
Identity = 71/117 (60.68%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGLSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRGNSPQDPKERRKLA R ARFVVRDGALYRRG SLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEEGLRV--QTHVGALDPAWEGPFEIKGIVRPGTYVLADLKEDVLAHPWNAEHLKRY 116
           PEEGL V  + H G              ++R G Y    L +D        ++ +RY
Sbjct: 256 PEEGLYVLREVHEGVCGNHSGARSLSAKVIRQG-YYWPTLSQDAKKFVRTCDNCQRY 311

[Close]

BLAST of Moc05g11600 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 5.3e-27
Identity = 72/117 (61.54%), Postives = 79/117 (67.52%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGLSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRGNSPQDPKERRKLARRAARFVVR  ALYRRG SLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEGLRV--QTHVGALDPAWEGPFEIKGIVRPGTYVLADLKEDVLAHPWNAEHLKRY 116
           PEEGL V  + H G              ++R G Y    L +DV       ++ +RY
Sbjct: 352 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQG-YYWPTLSQDVKKFVRTCDNCQRY 407

[Close]

BLAST of Moc05g11600 vs. NCBI nr
Match: XP_022142324.1 (uncharacterized protein LOC111012466 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-26
Identity = 70/117 (59.83%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGLSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRGNSPQDP E RKLARRAARFVVR GALYRRG SLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPNEHRKLARRAARFVVRGGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLRV--QTHVGALDPAWEGPFEIKGIVRPGTYVLADLKEDVLAHPWNAEHLKRY 116
           P+EGL V  + H G       G   +   V P  Y    L +D        ++ +RY
Sbjct: 310 PKEGLYVLREIHEGVCG-NHSGARSLSAKVIPQGYYWPTLSQDANKFVRTCDNCQRY 365

[Close]

BLAST of Moc05g11600 vs. NCBI nr
Match: XP_022156575.1 (uncharacterized protein LOC111023451 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 3.4e-26
Identity = 68/117 (58.12%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGLSLPLLRCLT 60
           ME+GAPE SWMDPI DFIRGNSPQDPKERRKLARR AR VVRDGALYRRG SLPLL+CLT
Sbjct: 250 MEVGAPESSWMDPITDFIRGNSPQDPKERRKLARRTARLVVRDGALYRRGFSLPLLKCLT 309

Query: 61  PEEGLRV--QTHVGALDPAWEGPFEIKGIVRPGTYVLADLKEDVLAHPWNAEHLKRY 116
           PEEGL V  + H G              ++R G Y    L +D        ++ +RY
Sbjct: 310 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQG-YYWPTLSQDAKQFVRTCDNCQRY 365

[Close]

BLAST of Moc05g11600 vs. ExPASy TrEMBL
Match: A0A6J1CQD7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-28
Identity = 73/117 (62.39%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGLSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRG SLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLRV--QTHVGALDPAWEGPFEIKGIVRPGTYVLADLKEDVLAHPWNAEHLKRY 116
           PEEGL V  + H G              ++R G Y    L +D        ++ +RY
Sbjct: 310 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQG-YYWPTLSQDAKKFVRTCDNCQRY 365

[Close]

BLAST of Moc05g11600 vs. ExPASy TrEMBL
Match: A0A6J1DYS0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.6e-27
Identity = 71/117 (60.68%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGLSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRGNSPQDPKERRKLA R ARFVVRDGALYRRG SLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEEGLRV--QTHVGALDPAWEGPFEIKGIVRPGTYVLADLKEDVLAHPWNAEHLKRY 116
           PEEGL V  + H G              ++R G Y    L +D        ++ +RY
Sbjct: 256 PEEGLYVLREVHEGVCGNHSGARSLSAKVIRQG-YYWPTLSQDAKKFVRTCDNCQRY 311

[Close]

BLAST of Moc05g11600 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.6e-27
Identity = 72/117 (61.54%), Postives = 79/117 (67.52%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGLSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRGNSPQDPKERRKLARRAARFVVR  ALYRRG SLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEGLRV--QTHVGALDPAWEGPFEIKGIVRPGTYVLADLKEDVLAHPWNAEHLKRY 116
           PEEGL V  + H G              ++R G Y    L +DV       ++ +RY
Sbjct: 352 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQG-YYWPTLSQDVKKFVRTCDNCQRY 407

[Close]

BLAST of Moc05g11600 vs. ExPASy TrEMBL
Match: A0A6J1CL97 (uncharacterized protein LOC111012466 OS=Momordica charantia OX=3673 GN=LOC111012466 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.4e-27
Identity = 70/117 (59.83%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGLSLPLLRCLT 60
           MEIGAPE SWMDPIADFIRGNSPQDP E RKLARRAARFVVR GALYRRG SLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPNEHRKLARRAARFVVRGGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLRV--QTHVGALDPAWEGPFEIKGIVRPGTYVLADLKEDVLAHPWNAEHLKRY 116
           P+EGL V  + H G       G   +   V P  Y    L +D        ++ +RY
Sbjct: 310 PKEGLYVLREIHEGVCG-NHSGARSLSAKVIPQGYYWPTLSQDANKFVRTCDNCQRY 365

[Close]

BLAST of Moc05g11600 vs. ExPASy TrEMBL
Match: A0A6J1DQP4 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023451 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.7e-26
Identity = 68/117 (58.12%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 1   MEIGAPEPSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGLSLPLLRCLT 60
           ME+GAPE SWMDPI DFIRGNSPQDPKERRKLARR AR VVRDGALYRRG SLPLL+CLT
Sbjct: 250 MEVGAPESSWMDPITDFIRGNSPQDPKERRKLARRTARLVVRDGALYRRGFSLPLLKCLT 309

Query: 61  PEEGLRV--QTHVGALDPAWEGPFEIKGIVRPGTYVLADLKEDVLAHPWNAEHLKRY 116
           PEEGL V  + H G              ++R G Y    L +D        ++ +RY
Sbjct: 310 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQG-YYWPTLSQDAKQFVRTCDNCQRY 365

The following BLAST results are available for this feature:

BLAST of Moc05g11600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143486.1	2.8e-28	62.39	uncharacterized protein LOC111013362 [Momordica charantia]	[more]
XP_022158219.1	5.3e-27	60.68	protein NYNRIN-like [Momordica charantia]	[more]
XP_022136647.1	5.3e-27	61.54	uncharacterized protein LOC111008302 [Momordica charantia]	[more]
XP_022142324.1	1.5e-26	59.83	uncharacterized protein LOC111012466 [Momordica charantia]	[more]
XP_022156575.1	3.4e-26	58.12	uncharacterized protein LOC111023451 [Momordica charantia]	[more]

BLAST of Moc05g11600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g11600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQD7	1.4e-28	62.39	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1	[more]
A0A6J1DYS0	2.6e-27	60.68	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1	[more]
A0A6J1C617	2.6e-27	61.54	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1	[more]
A0A6J1CL97	7.4e-27	59.83	uncharacterized protein LOC111012466 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1DQP4	1.7e-26	58.12	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023451 PE=4 SV=1	[more]

BLAST of Moc05g11600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g11600.1	Moc05g11600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity