Moc05g11520 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g11520
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr5: 8993368 .. 8993757 (+)
RNA-Seq Expression	Moc05g11520
Synteny	Moc05g11520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCAGCGTTGGACTTCTACAACACGGTTATTCAGCTGCTAGAATTAGATCGGTGGGGTCCTGACCTTGTAACGGAGCAAAATTTGGTGGATTTCGGTTTGGCACCTTTTCATCAATCTTTAGGTGATCGCCGAATACCCGTTCAAGTCTTTATTCCCTAACTAATATTTCCTAATTCTATTGCTTCTTTTGTAGAGATGTCGAGACGCGCTACTTCCTTGTTCGAGAGGGAACGATGGCGCAGTATCCGAAGATTTGGTGCCGGGTCGAGTCAAGCTTCAGACGTTGACATGACTGATCTGATGGAGGATGATCCTCCCTCTCGACCATTCCAAGCCCGATCTTCGATGCCTCCAGTTGCTCCTCGTCGATCCGCTTTCCTCTAG

mRNA sequence

ATGGATGCAGCGTTGGACTTCTACAACACGGTTATTCAGCTGCTAGAATTAGATCGGTGGGGTCCTGACCTTGTAACGGAGCAAAATTTGGTGGATTTCGGTTTGGCACCTTTTCATCAATCTTTAGAGATGTCGAGACGCGCTACTTCCTTGTTCGAGAGGGAACGATGGCGCAGTATCCGAAGATTTGGTGCCGGGTCGAGTCAAGCTTCAGACGTTGACATGACTGATCTGATGGAGGATGATCCTCCCTCTCGACCATTCCAAGCCCGATCTTCGATGCCTCCAGTTGCTCCTCGTCGATCCGCTTTCCTCTAG

Coding sequence (CDS)

ATGGATGCAGCGTTGGACTTCTACAACACGGTTATTCAGCTGCTAGAATTAGATCGGTGGGGTCCTGACCTTGTAACGGAGCAAAATTTGGTGGATTTCGGTTTGGCACCTTTTCATCAATCTTTAGAGATGTCGAGACGCGCTACTTCCTTGTTCGAGAGGGAACGATGGCGCAGTATCCGAAGATTTGGTGCCGGGTCGAGTCAAGCTTCAGACGTTGACATGACTGATCTGATGGAGGATGATCCTCCCTCTCGACCATTCCAAGCCCGATCTTCGATGCCTCCAGTTGCTCCTCGTCGATCCGCTTTCCTCTAG

Protein sequence

MDAALDFYNTVIQLLELDRWGPDLVTEQNLVDFGLAPFHQSLEMSRRATSLFERERWRSIRRFGAGSSQASDVDMTDLMEDDPPSRPFQARSSMPPVAPRRSAFL

Homology

[Close]

BLAST of Moc05g11520 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 4    ALDFYNTVIQLLELDRWGPDLVTEQNLVDFGLAPFHQSLEMSRRATSLFERERWRSIRRF 63
            A  FY+TVIQL +++RWGPDLVTEQNLVDFGLA  H   EM RR+ SL+ERE  R  R  
Sbjct: 1015 ASTFYHTVIQLPDIERWGPDLVTEQNLVDFGLALPHNPPEMLRRSASLYEREHRRDARSL 1074

Query: 64   GAGSSQASDVDMTD 78
             AGS +ASD++  D
Sbjct: 1075 EAGSGRASDIEGLD 1088

[Close]

BLAST of Moc05g11520 vs. ExPASy TrEMBL
Match: A0A6J1DSS1 (uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023586 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 4    ALDFYNTVIQLLELDRWGPDLVTEQNLVDFGLAPFHQSLEMSRRATSLFERERWRSIRRF 63
            A  FY+TVIQL +++RWGPDLVTEQNLVDFGLA  H   EM RR+ SL+ERE  R  R  
Sbjct: 1015 ASTFYHTVIQLPDIERWGPDLVTEQNLVDFGLALPHNPPEMLRRSASLYEREHRRDARSL 1074

Query: 64   GAGSSQASDVDMTD 78
             AGS +ASD++  D
Sbjct: 1075 EAGSGRASDIEGLD 1088

The following BLAST results are available for this feature:

BLAST of Moc05g11520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156747.1	2.1e-14	60.81	uncharacterized protein LOC111023586 [Momordica charantia]	[more]

BLAST of Moc05g11520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g11520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSS1	1.0e-14	60.81	uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Moc05g11520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g11520.1	Moc05g11520.1	mRNA