Moc05g11280 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g11280
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr5: 8803032 .. 8804559 (-)
RNA-Seq Expression	Moc05g11280
Synteny	Moc05g11280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGCGAATATTATGTCGCGGCATTAAAAGGCTTCACTACCCATGCAGCTATCACAGCTGAGGTCCCACCGCGGGATGACCCGACCCGCGGGACACCAACCGAAGAACTTGAGCTTGTGCCACTACTGAGCCCAGATAGACAATTCAGCATCGACACCAAGTTAAGGGCAGAGACTAGGATGAAGCTCGTCAACTTATTGCGAGCCAACGCAACGTATTTGCATGAATGCATGAGGACATGCCAAGGATCGACCCGAGCATCATGATACATAGGTTAAATGTGGACCCCTCTTTTAGACCTCTAAAGCAAAAGCGTCGGCCTATCGACGTTGAGCGTAGCCTTGTAATAGGTAGTGAGGTTAATAAGCTCTTACGAACTGATTTTATAAATGACATTCACTACCCTGTGTGGCTCTCTAATGTAGTACTAGTTAAAAAAGCTAACGGTAAATGGCGAGTTTGCATTGACTTCACGAGTCTGAACAAACCTTGTCCGAAGGATAGCTTTCCTCTACCTCAGATCGATCAGCTCGTCGATGCCACCACCGGTCACGAGCTACTTACTTTCGTGGACGCGTACTTAGGCTACAACCAAATTAAAATGCACGTACCTGACCAAGAGCACACCTCGTTCGTGACAGACCAGGGGCTCTATTACTATAAAGTCATGCCCTTTGGTCCTAAGAACGTTGGAGCCACATATCAGGGTATGGTGAACATGATGTTTGCCAAGCAGATCGATTGGAACATGGAAGTATATATGGATGACATGCTGGTAAAGAGCAAACAGGTCGGCTCACACATAGCCGACCTAACCGAAGCGTTTGATGTCATCCGTCGTTACAAGATGAAGCTGAACCCAGATGAGTGTGCCTTCGGCGTGGCTTCGGATAAATTTCTCAACTTCATGGTAAACCAATGAGGGATCGTAGATAACCCAGATAAAATTCGAGCTGCCCTAGAGATGGAGCCACCGAAGAATCTGAAGCATTTCCAACGCCTAAACGACAGAGTAGCCGCACTGAACTGTTTTGTTTCAAGGTCCATTGACAAGTATCCCTCATTCTTCAAGGTCTTGAGGAAAAGAGAGAAGCTTGAATGGACACCTGATTTCTCAGCTCACATGTGGCATGAGGTAATTAGATCATATGAGATGCACGTGTCTTATACTGCCAAAACACAACTTTCATCACCTCGGCCATGATTTCTTTGACCGAGCCAATCTTTTGACTAGCTGAACCGACCAAGCTGTATTAAGTATCGTTCCCCAAGTCATTGGTTGAATCGCTTGCTTTACTTCGACTCAGCCTCTTCTTCGACAAACTCCACGACAACACAAAGAGTTTCGCAGTAACCTTAAAGAGTCGTTCAGGCCTTGTCGGGAACATGGTCAGGGATTTTGCCTATAAAAAGGACCCATTTGCTCCATTTAAAAGTACGGGAATCCTAAATTCTTTCTTGAGTTTAGTTCGGCCAGCTACTGACTTTAGCATCGGAGTGTATTCTATCTTGCTGGTCACCTGA

mRNA sequence

ATGTCAAGCGAATATTATGTCGCGGCATTAAAAGGCTTCACTACCCATGCAGCTATCACAGCTGAGGTCCCACCGCGGGATGACCCGACCCGCGGGACACCAACCGAAGAACTTGAGCTTGTGCCACTACTGAGCCCAGATAGACAATTCAGCATCGACACCAAGTTAAGGGCAGAGACTAGGATGAAGCTCGTCAACTTATTGCGAGCCAACGCAACCCTCTTCTTCGACAAACTCCACGACAACACAAAGAGTTTCGCAGTAACCTTAAAGAGTCGTTCAGGCCTTGTCGGGAACATGGTCAGGGATTTTGCCTATAAAAAGGACCCATTTGCTCCATTTAAAAGTACGGGAATCCTAAATTCTTTCTTGAGTTTAGTTCGGCCAGCTACTGACTTTAGCATCGGAGTGTATTCTATCTTGCTGGTCACCTGA

Coding sequence (CDS)

ATGTCAAGCGAATATTATGTCGCGGCATTAAAAGGCTTCACTACCCATGCAGCTATCACAGCTGAGGTCCCACCGCGGGATGACCCGACCCGCGGGACACCAACCGAAGAACTTGAGCTTGTGCCACTACTGAGCCCAGATAGACAATTCAGCATCGACACCAAGTTAAGGGCAGAGACTAGGATGAAGCTCGTCAACTTATTGCGAGCCAACGCAACCCTCTTCTTCGACAAACTCCACGACAACACAAAGAGTTTCGCAGTAACCTTAAAGAGTCGTTCAGGCCTTGTCGGGAACATGGTCAGGGATTTTGCCTATAAAAAGGACCCATTTGCTCCATTTAAAAGTACGGGAATCCTAAATTCTTTCTTGAGTTTAGTTCGGCCAGCTACTGACTTTAGCATCGGAGTGTATTCTATCTTGCTGGTCACCTGA

Protein sequence

MSSEYYVAALKGFTTHAAITAEVPPRDDPTRGTPTEELELVPLLSPDRQFSIDTKLRAETRMKLVNLLRANATLFFDKLHDNTKSFAVTLKSRSGLVGNMVRDFAYKKDPFAPFKSTGILNSFLSLVRPATDFSIGVYSILLVT

Homology

[Close]

BLAST of Moc05g11280 vs. NCBI nr
Match: XP_022159205.1 (uncharacterized protein LOC111025624 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-12
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 1   MSSEYYVAALKGFTTHAAITAEVPP---RDDPTRGTPTEELELVPLLSPDRQFSIDTKLR 60
           MS E Y AA+KG TT AA+T    P     DP+RGTP EELELVPLL P++Q SI ++LR
Sbjct: 129 MSRECYAAAMKGTTTCAAVTGAAEPCADEPDPSRGTPAEELELVPLLGPEKQVSIGSRLR 188

Query: 61  AETRMKLVNLLRANATLF 76
           AE + +LV+ L+ANA +F
Sbjct: 189 AEVKEELVSFLKANADVF 206

[Close]

BLAST of Moc05g11280 vs. NCBI nr
Match: XP_022157402.1 (uncharacterized protein LOC111024109 [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-07
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 2   SSEYYVAALKGFTTHAAITAEVPP---RDDPTRGTPTEELELVPLLSPDRQFSIDTKLRA 61
           S E Y  A+KG TT AA+T    P     +P RGTP EELELVPLL  + Q SID+ L  
Sbjct: 86  SRECYATAMKGTTTCAAVTDAAEPCADEPEPNRGTPAEELELVPLLGLENQVSIDSGLWV 145

Query: 62  ETRMKLVNLLRANAT 74
           E + +LV  L+AN T
Sbjct: 146 EVKEELVGFLQANLT 160

[Close]

BLAST of Moc05g11280 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 21  AEVPPRDDPTRGTPTEELELVPLLSPDRQFSIDTKLRAETRMKLVNLLRANATLFFDKLH 80
           A++P R+      PTEELELVPLLSP++Q SI TKL A  R +L++ LR+N+ +F    H
Sbjct: 13  ADLPRRES---AAPTEELELVPLLSPEKQVSIGTKLGATDREELIHFLRSNSDVFAWS-H 72

Query: 81  DNTKSFAVTLKSRSGLVGNMVRDFAYKKDPFAPFKSTGILNSF 124
           ++  S    + +    +    R    K+ P    +S  I+  F
Sbjct: 73  EDMPSIDPKIMTHRLSIDPSFRPVKQKRRPINKERSDVIVEEF 111

[Close]

BLAST of Moc05g11280 vs. NCBI nr
Match: XP_022154846.1 (uncharacterized protein LOC111022006 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-04
Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 2   SSEYYVAALKGFTTHA-----------AITAEVPPRDDPTRGTPTEELELVPLLSPDRQF 61
           S + Y + LKGF                  A++P +       PTEELELVPLLSP++  
Sbjct: 377 SRKCYASTLKGFAVCTLEEQTNRGKLQGSEADLPKKSKRQFSPPTEELELVPLLSPEKHV 436

Query: 62  SIDTKLRAETRMKLVNLLRANATLF 76
           +I TKL A  R +L+N LR+N+ +F
Sbjct: 437 NIGTKLEATDRKELINFLRSNSDVF 461

[Close]

BLAST of Moc05g11280 vs. NCBI nr
Match: XP_022149378.1 (uncharacterized protein LOC111017809 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-04
Identity = 37/86 (43.02%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 1   MSSEYYVAALKGFTTHA-----------AITAEVPPRDDPTRGTPTEELELVPLLSPDRQ 60
           MS E Y +ALKG +  A              A++P          TEELELVPLLSP+RQ
Sbjct: 53  MSRECYASALKGLSVCALEEQAGWDKSLESKADLPQVGKREFFATTEELELVPLLSPERQ 112

Query: 61  FSIDTKLRAETRMKLVNLLRANATLF 76
            SI TKL A  R + +N LR N+ +F
Sbjct: 113 VSIGTKLGATDREEFINFLRTNSNVF 138

[Close]

BLAST of Moc05g11280 vs. ExPASy TrEMBL
Match: A0A6J1DY08 (uncharacterized protein LOC111025624 OS=Momordica charantia OX=3673 GN=LOC111025624 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 1   MSSEYYVAALKGFTTHAAITAEVPP---RDDPTRGTPTEELELVPLLSPDRQFSIDTKLR 60
           MS E Y AA+KG TT AA+T    P     DP+RGTP EELELVPLL P++Q SI ++LR
Sbjct: 129 MSRECYAAAMKGTTTCAAVTGAAEPCADEPDPSRGTPAEELELVPLLGPEKQVSIGSRLR 188

Query: 61  AETRMKLVNLLRANATLF 76
           AE + +LV+ L+ANA +F
Sbjct: 189 AEVKEELVSFLKANADVF 206

[Close]

BLAST of Moc05g11280 vs. ExPASy TrEMBL
Match: A0A6J1DUD8 (uncharacterized protein LOC111024109 OS=Momordica charantia OX=3673 GN=LOC111024109 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-07
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 2   SSEYYVAALKGFTTHAAITAEVPP---RDDPTRGTPTEELELVPLLSPDRQFSIDTKLRA 61
           S E Y  A+KG TT AA+T    P     +P RGTP EELELVPLL  + Q SID+ L  
Sbjct: 86  SRECYATAMKGTTTCAAVTDAAEPCADEPEPNRGTPAEELELVPLLGLENQVSIDSGLWV 145

Query: 62  ETRMKLVNLLRANAT 74
           E + +LV  L+AN T
Sbjct: 146 EVKEELVGFLQANLT 160

[Close]

BLAST of Moc05g11280 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.8e-05
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 21  AEVPPRDDPTRGTPTEELELVPLLSPDRQFSIDTKLRAETRMKLVNLLRANATLFFDKLH 80
           A++P R+      PTEELELVPLLSP++Q SI TKL A  R +L++ LR+N+ +F    H
Sbjct: 13  ADLPRRES---AAPTEELELVPLLSPEKQVSIGTKLGATDREELIHFLRSNSDVFAWS-H 72

Query: 81  DNTKSFAVTLKSRSGLVGNMVRDFAYKKDPFAPFKSTGILNSF 124
           ++  S    + +    +    R    K+ P    +S  I+  F
Sbjct: 73  EDMPSIDPKIMTHRLSIDPSFRPVKQKRRPINKERSDVIVEEF 111

[Close]

BLAST of Moc05g11280 vs. ExPASy TrEMBL
Match: A0A6J1DPX9 (uncharacterized protein LOC111022006 OS=Momordica charantia OX=3673 GN=LOC111022006 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 2   SSEYYVAALKGFTTHA-----------AITAEVPPRDDPTRGTPTEELELVPLLSPDRQF 61
           S + Y + LKGF                  A++P +       PTEELELVPLLSP++  
Sbjct: 377 SRKCYASTLKGFAVCTLEEQTNRGKLQGSEADLPKKSKRQFSPPTEELELVPLLSPEKHV 436

Query: 62  SIDTKLRAETRMKLVNLLRANATLF 76
           +I TKL A  R +L+N LR+N+ +F
Sbjct: 437 NIGTKLEATDRKELINFLRSNSDVF 461

[Close]

BLAST of Moc05g11280 vs. ExPASy TrEMBL
Match: A0A6J1D6M1 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111017809 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 37/86 (43.02%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 1   MSSEYYVAALKGFTTHA-----------AITAEVPPRDDPTRGTPTEELELVPLLSPDRQ 60
           MS E Y +ALKG +  A              A++P          TEELELVPLLSP+RQ
Sbjct: 53  MSRECYASALKGLSVCALEEQAGWDKSLESKADLPQVGKREFFATTEELELVPLLSPERQ 112

Query: 61  FSIDTKLRAETRMKLVNLLRANATLF 76
            SI TKL A  R + +N LR N+ +F
Sbjct: 113 VSIGTKLGATDREEFINFLRTNSNVF 138

The following BLAST results are available for this feature:

BLAST of Moc05g11280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159205.1	2.7e-12	56.41	uncharacterized protein LOC111025624 [Momordica charantia]	[more]
XP_022157402.1	4.4e-07	50.67	uncharacterized protein LOC111024109 [Momordica charantia]	[more]
XP_022136647.1	1.2e-04	35.92	uncharacterized protein LOC111008302 [Momordica charantia]	[more]
XP_022154846.1	2.7e-04	38.82	uncharacterized protein LOC111022006 [Momordica charantia]	[more]
XP_022149378.1	3.5e-04	43.02	uncharacterized protein LOC111017809 [Momordica charantia]	[more]

BLAST of Moc05g11280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g11280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DY08	1.3e-12	56.41	uncharacterized protein LOC111025624 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DUD8	2.1e-07	50.67	uncharacterized protein LOC111024109 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1C617	5.8e-05	35.92	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1	[more]
A0A6J1DPX9	1.3e-04	38.82	uncharacterized protein LOC111022006 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1D6M1	1.7e-04	43.02	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111017809 PE=4 SV=1	[more]

BLAST of Moc05g11280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g11280.1	Moc05g11280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0016787	hydrolase activity