Moc05g10890 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g10890
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionLINE-1 reverse transcriptase-like
Locationchr5: 8580161 .. 8581462 (+)
RNA-Seq ExpressionMoc05g10890
SyntenyMoc05g10890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAAGGGGTTTGAGGTGGGGACTAAAAAGGTGATGATTTCCCATTTGCAATATGCTGATGACACTATTCTATTTTGTCTTGATGAGAATGACTTTCTGTTTAAATGGTGGATTGTGGTAAATTGGTTTTTAAGGGCTTCAGGCCTCTCCTTAAATCTAGACAAGACCTCTCTTGTGGGATTAAATATCAGTGATGAAAGATTGGAGGATAAAGCTTTAAGCTTGGGCTACAGAGGGGAAACTTTTCCTTTATCCTATCTTGGGCTTCCATTAGGGGGAAACTACAAAGCTGCTACCCTGTGGCAGCCTTTGGTAGAGAAAATGAAGCAAAAGCTTAACAAATGGCACAACCTAGTTCTCTCAAAATGAGGTAGATTGACTCTAGCCCAATCGGTATTGAACAGTATGCCCATATATTATCTCTCTTTTAAAAGCTCCTGTGGGAATTGCTAAAACTCTTGATAAGCTTGTGAGAGATTTTTTTTTGGAAATCAGACAGATTACACCCCACAGAAATTTGGTTAATTGAGAAACTACTTCTCTGCCCTTGAAAGAGGGAGGCCTTTGGCATATAGGGGCTTTTCACCTCCGAAATAATGTGCTATTGTTGAAGTGGTTATGGAGATTCACTCAAGAGGAAGATGCCCTATGGAGAAGAGTTAAAAGTATTTACGGGATTGAGCCTCTCAGGTGGATGTCAAAAAAGCCTAAAAGAAAAGCAGTTGGTAAACCTTGGTTTGAAATAGCAAAGAACAGCATCCTCTTCCTCAAATTCTTGTCTTTCAAAGTAAAGCATGGTGATAGAGTTCGCTTTTGGTTGGATAGATGGACTGAAAATTCCACCCTTGCTCATGACTTTCCAGAAATTTTTGCTTTATCTTTGACGTAAAAGGCCGCAATTGCTGACTGTTGGAATGATGAGCAGCTCGCTTGGGATCTTGGCCTAAGGAGGGGTCTTTTTGACAGAGAAGTAGGGGTTGGGTTGACATAATGAGTAGATTAGATACTACTTGGATTGGAGAAGGAGCTGATAAAGTGGTATGGTTTCTAGACTCTTCTGGTGCTTACACGGTGAAATCAGGCTTAAAAATTCTGTTGGAAGACACTCCACACTTGAGTCCGCTTGTTACCTCTCTTCTTTGGAAATACTCAATCCTTAAGAAGGTAAAAGTCTTCCTTTGGACCCTAGCCAACAGAGCGGTTAACATAGCCGACAGACTCCACTCCAGAGAAGATGTCCAAATTGGACTCTTTCCCCTCCTGTTTGTGTTCTTTGCAAACAAAATGAGCAAACCATAG

mRNA sequence

ATGATTAAGGGGTTTGAGGTGGGGACTAAAAAGGTGATGATTTCCCATTTGCAATATGCTGATGACACTATTCTATTTTGTCTTGATGAGAATGACTTTCTGTTTAAATGGTGGATTGTGGTAAATTGGTTTTTAAGGGCTTCAGGCCTCTCCTTAAATCTAGACAAGACCTCTCTTGTGGGATTAAATATCAGTGATGAAAGATTGGAGGATAAAGCTTTAAGCTTGGGCTACAGAGGGGAAACTTTTCCTTTATCCTATCTTGGGCTTCCATTAGGGGGAAACTACAAAGCTGCTACCCTGTGGCAGCCTTTGGTAGAGAAAATGAAGCAAAAGCTTAACAAATGGCACAACCTATGGTTATGGAGATTCACTCAAGAGGAAGATGCCCTATGGAGAAGAGTTAAAAGTATTTACGGGATTGAGCCTCTCAGGTGGATGTCAAAAAAGCCTAAAAGAAAAGCAGTTGGTAAACCTTGGTTTGAAATAGCAAAGAACAGCATCCTCTTCCTCAAATTCTTGTCTTTCAAAGTAAAGCATGGTGATAGAGTTCGCTTTTGGTTGGATAGATGGACTGAAAATTCCACCCTTGCTCATGACTTTCCAGAAATTTTTGCTTTATCTTTGACATTAGATACTACTTGGATTGGAGAAGGAGCTGATAAAGTGGTATGGTTTCTAGACTCTTCTGGTGCTTACACGGTGAAATCAGGCTTAAAAATTCTGTTGGAAGACACTCCACACTTGAGTCCGCTTGTTACCTCTCTTCTTTGGAAATACTCAATCCTTAAGAAGGTAAAAGTCTTCCTTTGGACCCTAGCCAACAGAGCGGTTAACATAGCCGACAGACTCCACTCCAGAGAAGATGTCCAAATTGGACTCTTTCCCCTCCTGTTTGTGTTCTTTGCAAACAAAATGAGCAAACCATAG

Coding sequence (CDS)

ATGATTAAGGGGTTTGAGGTGGGGACTAAAAAGGTGATGATTTCCCATTTGCAATATGCTGATGACACTATTCTATTTTGTCTTGATGAGAATGACTTTCTGTTTAAATGGTGGATTGTGGTAAATTGGTTTTTAAGGGCTTCAGGCCTCTCCTTAAATCTAGACAAGACCTCTCTTGTGGGATTAAATATCAGTGATGAAAGATTGGAGGATAAAGCTTTAAGCTTGGGCTACAGAGGGGAAACTTTTCCTTTATCCTATCTTGGGCTTCCATTAGGGGGAAACTACAAAGCTGCTACCCTGTGGCAGCCTTTGGTAGAGAAAATGAAGCAAAAGCTTAACAAATGGCACAACCTATGGTTATGGAGATTCACTCAAGAGGAAGATGCCCTATGGAGAAGAGTTAAAAGTATTTACGGGATTGAGCCTCTCAGGTGGATGTCAAAAAAGCCTAAAAGAAAAGCAGTTGGTAAACCTTGGTTTGAAATAGCAAAGAACAGCATCCTCTTCCTCAAATTCTTGTCTTTCAAAGTAAAGCATGGTGATAGAGTTCGCTTTTGGTTGGATAGATGGACTGAAAATTCCACCCTTGCTCATGACTTTCCAGAAATTTTTGCTTTATCTTTGACATTAGATACTACTTGGATTGGAGAAGGAGCTGATAAAGTGGTATGGTTTCTAGACTCTTCTGGTGCTTACACGGTGAAATCAGGCTTAAAAATTCTGTTGGAAGACACTCCACACTTGAGTCCGCTTGTTACCTCTCTTCTTTGGAAATACTCAATCCTTAAGAAGGTAAAAGTCTTCCTTTGGACCCTAGCCAACAGAGCGGTTAACATAGCCGACAGACTCCACTCCAGAGAAGATGTCCAAATTGGACTCTTTCCCCTCCTGTTTGTGTTCTTTGCAAACAAAATGAGCAAACCATAG

Protein sequence

MIKGFEVGTKKVMISHLQYADDTILFCLDENDFLFKWWIVVNWFLRASGLSLNLDKTSLVGLNISDERLEDKALSLGYRGETFPLSYLGLPLGGNYKAATLWQPLVEKMKQKLNKWHNLWLWRFTQEEDALWRRVKSIYGIEPLRWMSKKPKRKAVGKPWFEIAKNSILFLKFLSFKVKHGDRVRFWLDRWTENSTLAHDFPEIFALSLTLDTTWIGEGADKVVWFLDSSGAYTVKSGLKILLEDTPHLSPLVTSLLWKYSILKKVKVFLWTLANRAVNIADRLHSREDVQIGLFPLLFVFFANKMSKP
Homology
BLAST of Moc05g10890 vs. NCBI nr
Match: XP_022158566.1 (uncharacterized protein LOC111025019 [Momordica charantia])

HSP 1 Score: 204.1 bits (518), Expect = 1.7e-48
Identity = 102/258 (39.53%), Postives = 142/258 (55.04%), Query Frame = 0

Query: 1   MIKGFEVGTKKVMISHLQYADDTILFCLDENDFLFKWWIVVNWFLRASGLSLNLDKTSLV 60
           +I+GF VG +++++SHL+YADDTI+FC      L +WW +++ F++ SGL +NL KTSL+
Sbjct: 81  IIQGFAVGRERIVVSHLRYADDTIIFCPAYKGNLDRWWALISLFIKGSGLRINLAKTSLI 140

Query: 61  GLNISDERLEDKALSLGYRGETFPLSYLGLPLGGNYKAATLWQPLVEKMKQKLNKWHN-- 120
           G+NI +     K   +G R E     YLGLPLGGN++    W+ LVEK    + K  N  
Sbjct: 141 GINIGENEATSKVDKIGCRVERMSFRYLGLPLGGNHRVIVFWRHLVEKAPVSITKEMNKI 200

Query: 121 ----------------------------------------------LWLWRFTQEEDALW 180
                                                          WLW FT+EE+ALW
Sbjct: 201 VRDLFWSGATSHGCKNLVKWDISSLPMKLGGLGIGAFPPKNNALLMKWLWHFTREENALW 260

Query: 181 RRV-KSIYGIEPLRWMSKKPKRKAVGKPWFEIAKNSILFLKFLSFKVKHGDRVRFWLDRW 210
           RRV  SIYG++   W++K PK KA G+PWF+IAKN   F + + FK   GDR+ FW+D+W
Sbjct: 261 RRVIASIYGVDKYGWLTKAPKGKAKGRPWFDIAKNLSAFQEMVVFKANQGDRLSFWMDKW 320

BLAST of Moc05g10890 vs. NCBI nr
Match: CAN83561.1 (hypothetical protein VITISV_024106 [Vitis vinifera])

HSP 1 Score: 156.0 bits (393), Expect = 5.3e-34
Identity = 103/342 (30.12%), Postives = 151/342 (44.15%), Query Frame = 0

Query: 1    MIKGFEVGTKKVMISHLQYADDTILFCLDENDFLFKWWIVVNWFLRASGLSLNLDKTSLV 60
            M++GF VG  +  +SHLQ+ADDTI F     + L     ++  F   SGL +NL+K+S+ 
Sbjct: 1270 MLEGFRVGRNRTRVSHLQFADDTIFFSNSREEELQTLKSLLLVFGHISGLKVNLNKSSIY 1329

Query: 61   GLNISDERLEDKALSLGYRGETFPLSYLGLPLGGNYKAATLWQPLVEKMKQKLN------ 120
            G+N+    L   A  L  +   +P+ YLGLPLGGN KA   W P+VE++ +         
Sbjct: 1330 GINLDQAHLSRLAEMLDCKASGWPILYLGLPLGGNPKACGFWDPVVERISKPKTIGGLGL 1389

Query: 121  ---KWHNL-----WLWRFTQEEDALWRRV-KSIYGIEPLRWMSKKPKRKAVGKPWFEIAK 180
                W NL     WLWR+ +E   LW +V  SIYG     W +    R +    W  IA+
Sbjct: 1390 GNISWRNLALLGKWLWRYPREGSXLWHQVILSIYGSHSNGWDANTVVRWSXRCXWKAIAQ 1449

Query: 181  NSILFLKFLSFKVKHGDRVRFWLDRWTENSTLAHDFPEIF-------------------- 240
                F     + V +GDR+RFW D W  +  L   +P +F                    
Sbjct: 1450 VFQEFSLITRYVVGNGDRIRFWEDLWRXDQPLGTQYPRLFRVVVDKNISISSVLGPSRPF 1509

Query: 241  -------------------ALSLTLDTTWIGEGA-DKVVWFLDSSGAYTVKSGLKILLED 288
                                L  +LD  ++     D  +W L SSG ++VKS    L + 
Sbjct: 1510 LWNLNFRRNLSDSEIEDLEGLMRSLDDLYLSPSVPDARLWPLSSSGLFSVKSFFLALSQS 1569

BLAST of Moc05g10890 vs. NCBI nr
Match: RVW90400.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 153.7 bits (387), Expect = 2.6e-33
Identity = 81/215 (37.67%), Postives = 117/215 (54.42%), Query Frame = 0

Query: 1   MIKGFEVGTKKVMISHLQYADDTILFCLDENDFLFKWWIVVNWFLRASGLSLNLDKTSLV 60
           +++GF VG  +  +SHLQ+ADDTI F     + L     V+  F   SGL +NLDK+++ 
Sbjct: 681 VLEGFRVGRNRTRVSHLQFADDTIFFSSTREEDLMTLKSVLLVFGHISGLKVNLDKSNIY 740

Query: 61  GLNISDERLEDKALSLGYRGETFPLSYLGLPLGGNYKAATLWQPLVEKMKQKLNKWHNL- 120
           G+N+    L   A+ L  +   +P+ YLGLPLGGN KA+  W P++E++ ++L+ W    
Sbjct: 741 GINLEQNHLSRLAVMLDCKASGWPILYLGLPLGGNPKASGFWDPVIERISRRLDGWQKAY 800

Query: 121 ------WLWRFTQEEDALWRRV-KSIYGIEPLRWMSKKPKRKAVGKPWFEIAKNSILFLK 180
                 WLWR+ +E  ALW +V  SIYG     W      R +   PW  IA     F K
Sbjct: 801 LSFGGKWLWRYPREGSALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSK 860

Query: 181 FLSFKVKHGDRVRFWLDRWTENSTLAHDFPEIFAL 208
           F  F V  GDR+RFW D W  + TL   +P + ++
Sbjct: 861 FTRFVVGDGDRIRFWDDLWWGDQTLGTQYPRLLSV 895

BLAST of Moc05g10890 vs. NCBI nr
Match: XP_009335445.1 (PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri])

HSP 1 Score: 153.7 bits (387), Expect = 2.6e-33
Identity = 115/422 (27.25%), Postives = 170/422 (40.28%), Query Frame = 0

Query: 1   MIKGFEVGTKKVMISHLQYADDTILFCLDENDFLFKWWIVVNWFLRASGLSLNLDKTSLV 60
           +IKG  +G ++V ISHLQ+ADDTI F  ++ D       V+N F   SGL +N  K S+ 
Sbjct: 488 LIKGLGIGQERVEISHLQFADDTIFFLAEDEDVWNNLLEVLNLFCTISGLKINKAKCSMA 547

Query: 61  GLNISDERLEDKALSLGYRGETFPLSYLGLPLGGNYKAATLWQPLVEKMKQKLNKWH--- 120
           G+N   E+L+  A S G    ++P+ YLGLPLGG  KA   W P+VEKM+++L  W    
Sbjct: 548 GINSDCEKLKGMADSWGCEVGSWPIKYLGLPLGGRPKALMFWDPVVEKMEKRLQSWKKAF 607

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 608 LSKGGRLTLIQFVLGSLPIYYMSLFKIPCGVIGRLEKLMKGFLWEGVEEGKKNHLVKWEI 667

Query: 181 -------------NL----------WLWRFTQEEDALWRRV-KSIYGIEPLRWMSKKPKR 240
                        NL          WLWRF +E ++LW +V +S YG++   W +  P R
Sbjct: 668 VIKSKEEGGLCVGNLRNQKEALLAKWLWRFPKEPNSLWHKVIRSKYGLQDNGWNANPPLR 727

Query: 241 KAVGKPWFEIAKNSILFLKFLSFKVKHGDRVRFWLDRWTENSTLAHDFPEIFALS----- 293
            +   PW +I+     FL+   F+V +G+RVRFW D W E   L   +P +F LS     
Sbjct: 728 GSSRSPWKDISCGLQSFLQCCKFEVGNGERVRFWEDGWLEGGPLKEQYPRLFLLSRMHNQ 787

BLAST of Moc05g10890 vs. NCBI nr
Match: RVX05136.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 153.3 bits (386), Expect = 3.4e-33
Identity = 105/337 (31.16%), Postives = 152/337 (45.10%), Query Frame = 0

Query: 1   MIKGFEVGTKKVMISHLQYADDTILFCLDENDFLFKWWIVVNWFLRASGLSLNLDKTSLV 60
           +++GF+VG  +  +SHLQ+ADDTI F     + +     V+  F   SGL +NLDK+++ 
Sbjct: 138 VLEGFKVGRNRTRVSHLQFADDTIFFSSSREEDMMTLKNVLLVFGHISGLKVNLDKSNIY 197

Query: 61  GLNISDERLEDKALSLGYRGETFPLSYLGLPLGGNYKAATLWQPLVEKMKQKLNKWHNLW 120
           G+N+    L   A  L  +   +P+ YLGLPLGGN K +  W P++E++ ++L+ W   +
Sbjct: 198 GINLEQNHLSRLAEMLDCKASGWPILYLGLPLGGNPKTSGFWDPVIERISRRLDGWQKAY 257

Query: 121 L---WRFT-----------------------------QEEDALWRRV------------- 180
           L    R T                              + D LW  V             
Sbjct: 258 LSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQRDFLWSGVGEGKRDHLVNWDV 317

Query: 181 ---KSIYGIEPLRWMSKKPKRKAVGKPWFEIAKNSILFLKFLSFKVKHGDRVRFWLDRWT 240
               SIYG     W      R +   PW  IA     F KF  F V +GDR+RFW D W 
Sbjct: 318 CVILSIYGSHSNGWDVNNIVRWSHRCPWKAIALVYQEFSKFTRFVVGNGDRIRFWDDLWW 377

Query: 241 ENSTLAHDFPEIFALSLTLDTTWIGEGADKVVWFLDSSGAYTVKSGLKILLE--DTPHLS 288
               L   +P +  + +T     I    DK  W L  SG +TVKS    L +  ++P + 
Sbjct: 378 GEQPLGVQYPRLLRV-VTDKNAPISSILDKRSWSLSPSGLFTVKSFFLALSQYSESPPIF 437

BLAST of Moc05g10890 vs. ExPASy TrEMBL
Match: A0A6J1E196 (uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025019 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 8.2e-49
Identity = 102/258 (39.53%), Postives = 142/258 (55.04%), Query Frame = 0

Query: 1   MIKGFEVGTKKVMISHLQYADDTILFCLDENDFLFKWWIVVNWFLRASGLSLNLDKTSLV 60
           +I+GF VG +++++SHL+YADDTI+FC      L +WW +++ F++ SGL +NL KTSL+
Sbjct: 81  IIQGFAVGRERIVVSHLRYADDTIIFCPAYKGNLDRWWALISLFIKGSGLRINLAKTSLI 140

Query: 61  GLNISDERLEDKALSLGYRGETFPLSYLGLPLGGNYKAATLWQPLVEKMKQKLNKWHN-- 120
           G+NI +     K   +G R E     YLGLPLGGN++    W+ LVEK    + K  N  
Sbjct: 141 GINIGENEATSKVDKIGCRVERMSFRYLGLPLGGNHRVIVFWRHLVEKAPVSITKEMNKI 200

Query: 121 ----------------------------------------------LWLWRFTQEEDALW 180
                                                          WLW FT+EE+ALW
Sbjct: 201 VRDLFWSGATSHGCKNLVKWDISSLPMKLGGLGIGAFPPKNNALLMKWLWHFTREENALW 260

Query: 181 RRV-KSIYGIEPLRWMSKKPKRKAVGKPWFEIAKNSILFLKFLSFKVKHGDRVRFWLDRW 210
           RRV  SIYG++   W++K PK KA G+PWF+IAKN   F + + FK   GDR+ FW+D+W
Sbjct: 261 RRVIASIYGVDKYGWLTKAPKGKAKGRPWFDIAKNLSAFQEMVVFKANQGDRLSFWMDKW 320

BLAST of Moc05g10890 vs. ExPASy TrEMBL
Match: A5BSZ6 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_024106 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-34
Identity = 103/342 (30.12%), Postives = 151/342 (44.15%), Query Frame = 0

Query: 1    MIKGFEVGTKKVMISHLQYADDTILFCLDENDFLFKWWIVVNWFLRASGLSLNLDKTSLV 60
            M++GF VG  +  +SHLQ+ADDTI F     + L     ++  F   SGL +NL+K+S+ 
Sbjct: 1270 MLEGFRVGRNRTRVSHLQFADDTIFFSNSREEELQTLKSLLLVFGHISGLKVNLNKSSIY 1329

Query: 61   GLNISDERLEDKALSLGYRGETFPLSYLGLPLGGNYKAATLWQPLVEKMKQKLN------ 120
            G+N+    L   A  L  +   +P+ YLGLPLGGN KA   W P+VE++ +         
Sbjct: 1330 GINLDQAHLSRLAEMLDCKASGWPILYLGLPLGGNPKACGFWDPVVERISKPKTIGGLGL 1389

Query: 121  ---KWHNL-----WLWRFTQEEDALWRRV-KSIYGIEPLRWMSKKPKRKAVGKPWFEIAK 180
                W NL     WLWR+ +E   LW +V  SIYG     W +    R +    W  IA+
Sbjct: 1390 GNISWRNLALLGKWLWRYPREGSXLWHQVILSIYGSHSNGWDANTVVRWSXRCXWKAIAQ 1449

Query: 181  NSILFLKFLSFKVKHGDRVRFWLDRWTENSTLAHDFPEIF-------------------- 240
                F     + V +GDR+RFW D W  +  L   +P +F                    
Sbjct: 1450 VFQEFSLITRYVVGNGDRIRFWEDLWRXDQPLGTQYPRLFRVVVDKNISISSVLGPSRPF 1509

Query: 241  -------------------ALSLTLDTTWIGEGA-DKVVWFLDSSGAYTVKSGLKILLED 288
                                L  +LD  ++     D  +W L SSG ++VKS    L + 
Sbjct: 1510 LWNLNFRRNLSDSEIEDLEGLMRSLDDLYLSPSVPDARLWPLSSSGLFSVKSFFLALSQS 1569

BLAST of Moc05g10890 vs. ExPASy TrEMBL
Match: A0A438I181 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_280 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-33
Identity = 81/215 (37.67%), Postives = 117/215 (54.42%), Query Frame = 0

Query: 1   MIKGFEVGTKKVMISHLQYADDTILFCLDENDFLFKWWIVVNWFLRASGLSLNLDKTSLV 60
           +++GF VG  +  +SHLQ+ADDTI F     + L     V+  F   SGL +NLDK+++ 
Sbjct: 681 VLEGFRVGRNRTRVSHLQFADDTIFFSSTREEDLMTLKSVLLVFGHISGLKVNLDKSNIY 740

Query: 61  GLNISDERLEDKALSLGYRGETFPLSYLGLPLGGNYKAATLWQPLVEKMKQKLNKWHNL- 120
           G+N+    L   A+ L  +   +P+ YLGLPLGGN KA+  W P++E++ ++L+ W    
Sbjct: 741 GINLEQNHLSRLAVMLDCKASGWPILYLGLPLGGNPKASGFWDPVIERISRRLDGWQKAY 800

Query: 121 ------WLWRFTQEEDALWRRV-KSIYGIEPLRWMSKKPKRKAVGKPWFEIAKNSILFLK 180
                 WLWR+ +E  ALW +V  SIYG     W      R +   PW  IA     F K
Sbjct: 801 LSFGGKWLWRYPREGSALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSK 860

Query: 181 FLSFKVKHGDRVRFWLDRWTENSTLAHDFPEIFAL 208
           F  F V  GDR+RFW D W  + TL   +P + ++
Sbjct: 861 FTRFVVGDGDRIRFWDDLWWGDQTLGTQYPRLLSV 895

BLAST of Moc05g10890 vs. ExPASy TrEMBL
Match: A0A438J8A4 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_60 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-33
Identity = 105/337 (31.16%), Postives = 152/337 (45.10%), Query Frame = 0

Query: 1   MIKGFEVGTKKVMISHLQYADDTILFCLDENDFLFKWWIVVNWFLRASGLSLNLDKTSLV 60
           +++GF+VG  +  +SHLQ+ADDTI F     + +     V+  F   SGL +NLDK+++ 
Sbjct: 138 VLEGFKVGRNRTRVSHLQFADDTIFFSSSREEDMMTLKNVLLVFGHISGLKVNLDKSNIY 197

Query: 61  GLNISDERLEDKALSLGYRGETFPLSYLGLPLGGNYKAATLWQPLVEKMKQKLNKWHNLW 120
           G+N+    L   A  L  +   +P+ YLGLPLGGN K +  W P++E++ ++L+ W   +
Sbjct: 198 GINLEQNHLSRLAEMLDCKASGWPILYLGLPLGGNPKTSGFWDPVIERISRRLDGWQKAY 257

Query: 121 L---WRFT-----------------------------QEEDALWRRV------------- 180
           L    R T                              + D LW  V             
Sbjct: 258 LSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQRDFLWSGVGEGKRDHLVNWDV 317

Query: 181 ---KSIYGIEPLRWMSKKPKRKAVGKPWFEIAKNSILFLKFLSFKVKHGDRVRFWLDRWT 240
               SIYG     W      R +   PW  IA     F KF  F V +GDR+RFW D W 
Sbjct: 318 CVILSIYGSHSNGWDVNNIVRWSHRCPWKAIALVYQEFSKFTRFVVGNGDRIRFWDDLWW 377

Query: 241 ENSTLAHDFPEIFALSLTLDTTWIGEGADKVVWFLDSSGAYTVKSGLKILLE--DTPHLS 288
               L   +P +  + +T     I    DK  W L  SG +TVKS    L +  ++P + 
Sbjct: 378 GEQPLGVQYPRLLRV-VTDKNAPISSILDKRSWSLSPSGLFTVKSFFLALSQYSESPPIF 437

BLAST of Moc05g10890 vs. ExPASy TrEMBL
Match: A5BSZ3 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_035610 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-33
Identity = 110/360 (30.56%), Postives = 153/360 (42.50%), Query Frame = 0

Query: 1    MIKGFEVGTKKVMISHLQYADDTILFCLDENDFLFKWWIVVNWFLRASGLSLNLDKTSLV 60
            + +GF VG  +  +SHLQ+ADDTI F     + L     V+  F   SGL +NLDK+++ 
Sbjct: 1124 VFEGFRVGRNRTRVSHLQFADDTIFFXSTREEDLLTLKSVLVVFGHISGLKVNLDKSNIY 1183

Query: 61   GLNISDERLEDKALSLGYRGETFPLSYLGLPLGGNYKAAT--------LWQPLVEKMKQK 120
            G+N+  + L   A  L  +   +P+ YLGLPLGGN K+          LW  + E  +  
Sbjct: 1184 GINLGQDHLHRLAKLLDCKASGWPILYLGLPLGGNPKSGRIERLQRDFLWSGVGEGKRDH 1243

Query: 121  LNKWH------------------------NLWLWRFTQEEDALWRRV-KSIYGIEPLRWM 180
            L  W                           WLWR+ +E  ALW +V  SIYG     W 
Sbjct: 1244 LVSWDVVCKSKMKGGLGLGRISLRNSALLGKWLWRYPKEGSALWHQVILSIYGSHSNGWD 1303

Query: 181  SKKPKRKAVGKPWFEIAKNSILFLKFLSFKVKHGDRVRFWLDRWTENSTLAHDFP----- 240
            +    R +   PW  IA+    F KF  F V  GDR+RFW D W  + +L   FP     
Sbjct: 1304 ANTVVRWSHRCPWKAIAQVFQDFSKFTRFMVGDGDRIRFWEDLWWGDQSLGVRFPRLLRV 1363

Query: 241  ----------------------------------EIFALSLTLDTTWIGEGA-DKVVWFL 288
                                              E+ +L  +LD   +     DK  W L
Sbjct: 1364 VMDKNIPISSILGSTRPFSWNFNFRRNLSDSEIEEVESLMQSLDHIHLSPSVPDKRSWSL 1423

BLAST of Moc05g10890 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.1e-05
Identity = 25/76 (32.89%), Postives = 42/76 (55.26%), Query Frame = 0

Query: 221 DKVVWFLDSSGAYTVKSGLKILLED---------TPHLSPLVTSLLWKYSILKKVKVFLW 280
           DK++W  +++G YTV+SG  +L  D          PH S  + + +W   I+ K+K FLW
Sbjct: 117 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLW 176

Query: 281 TLANRAVNIADRLHSR 288
              ++A+   +RL +R
Sbjct: 177 RALSQALATTERLTTR 192

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158566.11.7e-4839.53uncharacterized protein LOC111025019 [Momordica charantia][more]
CAN83561.15.3e-3430.12hypothetical protein VITISV_024106 [Vitis vinifera][more]
RVW90400.12.6e-3337.67Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
XP_009335445.12.6e-3327.25PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri][more]
RVX05136.13.4e-3331.16LINE-1 retrotransposable element ORF2 protein [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E1968.2e-4939.53uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A5BSZ62.6e-3430.12Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
A0A438I1811.3e-3337.67Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... [more]
A0A438J8A41.7e-3331.16LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF... [more]
A5BSZ32.8e-3330.56Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
Match NameE-valueIdentityDescription
AT3G09510.11.1e-0532.89Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116:SF47REVERSE TRANSCRIPTASE DOMAIN, ZINC FINGER, CCHC-TYPE-RELATEDcoord: 13..138
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 13..138
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..92
score: 9.593082

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g10890.1Moc05g10890.1mRNA