Moc05g10880 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g10880
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr5: 8571916 .. 8572776 (-)
RNA-Seq Expression	Moc05g10880
Synteny	Moc05g10880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTCTTTATGAGTCTAGTGAAGATTGATGTGGAGAAATTTGACGGAATGATCAACTTCGACTTGTGGCAAATGCAAGTCAAGGATGTGCTGATACAATCTGGGATACACAAGACATTGAAGGGAAGACCGAATGAAGGTGCTTCTCAAAAGCTAAGCGGTTATGGTGGTCCAATCGAGTCCAGTGGTGGTTCTAGCAGAGGTTCTAGAAAGTTCAACATGAGTGATGAAGATTGGGAGGAAATGAATTTGAGGGCTGCAAGTGCAATACGAACAGGTTTGCCTAAGAATATTCTTGCGAATGTGCATGGAATTTCGACAACCAAAGAACTTTGGGAGAAGCTCAAAGTGTTGTATCAGGCAAAGGGCATCTCAAATCGGTTGTACCTGAAGGAGCAGTTTTACACGCTGCAAATGGAGGAAGGTACGAAAATTTCAAATCATCTTAGTAATCTCAATAGCATCATCTTTGAGTTGGAGGCGATCGAAGTGAAGATAGATGACGAAGATAAAACACTCAAACTCATCTTATCACTTCCACCTCCTTATGAACACATGAAGCGGATCTTGATGTATGAGAAGGATACTTTGAATTTTCCCGAGGCTACTAGTAAACTGTTGTCAGAGGAAAGAAGGCTGAAAAGTGAAGGGCGTACTTCACATGAAGATTCGACATTGGAAGCTAGCAATTGGAAGAAGAAGAAAGACTCCATAGAAAAGAAAGCTTGTTGCTGGGGATGCGGACAATCTGGGCACATGAAGAAAGATTGTCCCAGTAGAGCCGATTCGTCAAAGAGCTCTGGACCGGATGCTGACAATGTTTCTCTCATTAGGGGAGACGATGATCAGTGTCTTTGA

mRNA sequence

ATGTCATTCTTTATGAGTCTAGTGAAGATTGATGTGGAGAAATTTGACGGAATGATCAACTTCGACTTGTGGCAAATGCAAGTCAAGGATGTGCTGATACAATCTGGGATACACAAGACATTGAAGGGAAGACCGAATGAAGGTGCTTCTCAAAAGCTAAGCGGTTATGGTGGTCCAATCGAGTCCAGTGGTGGTTCTAGCAGAGGTTCTAGAAAGTTCAACATGAGTGATGAAGATTGGGAGGAAATGAATTTGAGGGCTGCAAGTGCAATACGAACAGGTTTGCCTAAGAATATTCTTGCGAATGTGCATGGAATTTCGACAACCAAAGAACTTTGGGAGAAGCTCAAAGTGTTGTATCAGGCAAAGGGCATCTCAAATCGGTTGTACCTGAAGGAGCAGTTTTACACGCTGCAAATGGAGGAAGGTACGAAAATTTCAAATCATCTTAGTAATCTCAATAGCATCATCTTTGAGTTGGAGGCGATCGAAGTGAAGATAGATGACGAAGATAAAACACTCAAACTCATCTTATCACTTCCACCTCCTTATGAACACATGAAGCGGATCTTGATGTATGAGAAGGATACTTTGAATTTTCCCGAGGCTACTAGTAAACTGTTGTCAGAGGAAAGAAGGCTGAAAAGTGAAGGGCGTACTTCACATGAAGATTCGACATTGGAAGCTAGCAATTGGAAGAAGAAGAAAGACTCCATAGAAAAGAAAGCTTGTTGCTGGGGATGCGGACAATCTGGGCACATGAAGAAAGATTGTCCCAGTAGAGCCGATTCGTCAAAGAGCTCTGGACCGGATGCTGACAATGTTTCTCTCATTAGGGGAGACGATGATCAGTGTCTTTGA

Coding sequence (CDS)

ATGTCATTCTTTATGAGTCTAGTGAAGATTGATGTGGAGAAATTTGACGGAATGATCAACTTCGACTTGTGGCAAATGCAAGTCAAGGATGTGCTGATACAATCTGGGATACACAAGACATTGAAGGGAAGACCGAATGAAGGTGCTTCTCAAAAGCTAAGCGGTTATGGTGGTCCAATCGAGTCCAGTGGTGGTTCTAGCAGAGGTTCTAGAAAGTTCAACATGAGTGATGAAGATTGGGAGGAAATGAATTTGAGGGCTGCAAGTGCAATACGAACAGGTTTGCCTAAGAATATTCTTGCGAATGTGCATGGAATTTCGACAACCAAAGAACTTTGGGAGAAGCTCAAAGTGTTGTATCAGGCAAAGGGCATCTCAAATCGGTTGTACCTGAAGGAGCAGTTTTACACGCTGCAAATGGAGGAAGGTACGAAAATTTCAAATCATCTTAGTAATCTCAATAGCATCATCTTTGAGTTGGAGGCGATCGAAGTGAAGATAGATGACGAAGATAAAACACTCAAACTCATCTTATCACTTCCACCTCCTTATGAACACATGAAGCGGATCTTGATGTATGAGAAGGATACTTTGAATTTTCCCGAGGCTACTAGTAAACTGTTGTCAGAGGAAAGAAGGCTGAAAAGTGAAGGGCGTACTTCACATGAAGATTCGACATTGGAAGCTAGCAATTGGAAGAAGAAGAAAGACTCCATAGAAAAGAAAGCTTGTTGCTGGGGATGCGGACAATCTGGGCACATGAAGAAAGATTGTCCCAGTAGAGCCGATTCGTCAAAGAGCTCTGGACCGGATGCTGACAATGTTTCTCTCATTAGGGGAGACGATGATCAGTGTCTTTGA

Protein sequence

MSFFMSLVKIDVEKFDGMINFDLWQMQVKDVLIQSGIHKTLKGRPNEGASQKLSGYGGPIESSGGSSRGSRKFNMSDEDWEEMNLRAASAIRTGLPKNILANVHGISTTKELWEKLKVLYQAKGISNRLYLKEQFYTLQMEEGTKISNHLSNLNSIIFELEAIEVKIDDEDKTLKLILSLPPPYEHMKRILMYEKDTLNFPEATSKLLSEERRLKSEGRTSHEDSTLEASNWKKKKDSIEKKACCWGCGQSGHMKKDCPSRADSSKSSGPDADNVSLIRGDDDQCL

Homology

[Close]

BLAST of Moc05g10880 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 432.2 bits (1110), Expect = 3.5e-117
Identity = 222/261 (85.06%), Postives = 237/261 (90.80%), Query Frame = 0


Query: 1   MSFFMSLVKIDVEKFDGMINFDLWQMQVKDVLIQSGIHKTLKGRPNEGASQKLSGYGGPI 60
           MSFFMS VKIDVEKFDGMINF LWQ+QVKDVLIQS +HK LKGRP+EGAS+KLS  GGP+
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGSSRGSRKFNMSDEDWEEMNLRAASAIRTGLPKNILANVHGISTTKELWEKLKVLY 120
           ESSGGSSRGS+K +MS EDWEEM+LRAASAIRT L KNILANVH IST KELWEKL+ LY
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

Query: 121 QAKGISNRLYLKEQFYTLQMEEGTKISNHLSNLNSIIFELEAIEVKIDDEDKTLKLILSL 180
           QAKGISNRLYLKEQF+TLQMEEG KIS+HLSNLNSIIFELEAIEVKIDDEDK L+LILSL
Sbjct: 415 QAKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSL 474

Query: 181 PPPYEHMKRILMYEKDTLNFPEATSKLLSEERRLKSEGRTSHEDSTLEASNWKKKKDSIE 240
           P  YEHMK ILMY KDTLNF E TSKLLSEERRLKSEGRTSHEDS L  SNWKKKKDS++
Sbjct: 475 PXSYEHMKPILMYGKDTLNFAEVTSKLLSEERRLKSEGRTSHEDSALVVSNWKKKKDSVQ 534

Query: 241 KKACCWGCGQSGHMKKDCPSR 262
           KKACCWGCGQSGHMKKDCP+R
Sbjct: 535 KKACCWGCGQSGHMKKDCPNR 555

[Close]

BLAST of Moc05g10880 vs. NCBI nr
Match: KAF5765959.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 290.4 bits (742), Expect = 1.7e-74
Identity = 161/277 (58.12%), Postives = 202/277 (72.92%), Query Frame = 0


Query: 6   SLVKIDVEKFDGMINFDLWQMQVKDVLIQSGIHKTLKGRPNEGASQKLSGYGGPIESSGG 65
           S ++ DVEK+DG INF LWQ+QVKDVLIQSG+HK L+G+P   +S          + S G
Sbjct: 5   SPMRFDVEKYDGRINFGLWQVQVKDVLIQSGLHKALRGKPTPVSS----------KDSSG 64

Query: 66  SSRGSRKFNMSDEDWEEMNLRAASAIRTGLPKNILANVHGISTTKELWEKLKVLYQAKGI 125
           +S+        DE+WE+++LRAASAIR  L KN+LANVHGIST K+LWEKL+ LYQ KGI
Sbjct: 65  TSKD------DDEEWEDLDLRAASAIRLCLAKNVLANVHGISTAKDLWEKLEQLYQGKGI 124

Query: 126 SNRLYLKEQFYTLQMEEGTKISNHLSNLNSIIFELEAIEVKIDDEDKTLKLILSLPPPYE 185
            NRLYLKEQF+TL+M+  TKIS+HLS LN+I+ ELEAI VK++DEDK L+LILSL   YE
Sbjct: 125 PNRLYLKEQFHTLRMDGDTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILSLTSSYE 184

Query: 186 HMKRILMYEKDTLNFPEATSKLLSEERRLKSEGRTSHEDSTLEASNWKKKKDSIEKKACC 245
           HMK ILMY K+TL + + T KLLSEE+RL S G TS E + L   N KKK    +K   C
Sbjct: 185 HMKPILMYGKETLKYADVTEKLLSEEKRLGSSGHTSSEGTVLICGNGKKKHP--QKIPVC 244

Query: 246 WGCGQSGHMKKDCPSRADSSKSSGPDADNVSLIRGDD 283
           W CGQSGH+K++CP  ADS+ SS   A+NV+++ GDD
Sbjct: 245 WKCGQSGHVKRNCPGGADSA-SSSKTANNVAVVDGDD 262

[Close]

BLAST of Moc05g10880 vs. NCBI nr
Match: KAF5758504.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-73
Identity = 160/277 (57.76%), Postives = 202/277 (72.92%), Query Frame = 0


Query: 6   SLVKIDVEKFDGMINFDLWQMQVKDVLIQSGIHKTLKGRPNEGASQKLSGYGGPIESSGG 65
           S ++  VEK+DG INF LWQ+QVKDVLIQSG+HK L+G+P   +S          + S G
Sbjct: 5   SPMRFVVEKYDGRINFGLWQVQVKDVLIQSGLHKALRGKPTPVSS----------KDSSG 64

Query: 66  SSRGSRKFNMSDEDWEEMNLRAASAIRTGLPKNILANVHGISTTKELWEKLKVLYQAKGI 125
           +S+        DE+WE+++LRAASAIR  L KN+LANVHGIST K+LWEKL+ LYQ KGI
Sbjct: 65  TSKD------DDEEWEDLDLRAASAIRLCLAKNVLANVHGISTAKDLWEKLEQLYQGKGI 124

Query: 126 SNRLYLKEQFYTLQMEEGTKISNHLSNLNSIIFELEAIEVKIDDEDKTLKLILSLPPPYE 185
           SNRLYLKEQF+TL+M+  TKIS+HLS LN+I+ ELEAI VK++DEDK L+LILSL   YE
Sbjct: 125 SNRLYLKEQFHTLRMDGDTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILSLTSSYE 184

Query: 186 HMKRILMYEKDTLNFPEATSKLLSEERRLKSEGRTSHEDSTLEASNWKKKKDSIEKKACC 245
           HMK ILMY K+TL + + T KLLSEE+RL S G TS E + L   N KKK    +K   C
Sbjct: 185 HMKPILMYGKETLKYADVTEKLLSEEKRLGSSGHTSSEGTVLICGNGKKKHP--QKIPVC 244

Query: 246 WGCGQSGHMKKDCPSRADSSKSSGPDADNVSLIRGDD 283
           W CGQSGH+K++CP  ADS+ S+   A+NV+++ GDD
Sbjct: 245 WKCGQSGHVKRNCPGGADSA-SNSKTANNVAVVDGDD 262

[Close]

BLAST of Moc05g10880 vs. NCBI nr
Match: KAE8717380.1 (hypothetical protein F3Y22_tig00110050pilonHSYRG00143 [Hibiscus syriacus])

HSP 1 Score: 285.0 bits (728), Expect = 7.0e-73
Identity = 156/277 (56.32%), Postives = 197/277 (71.12%), Query Frame = 0


Query: 9   KIDVEKFDGMINFDLWQMQVKDVLIQSGIHKTLKGRPNEGASQKLSGYGGPIESSGGSSR 68
           + D+EKFDG INF LWQ+QVKD+LIQSG++K LKG+P   +  K      P +SSG    
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEP--DKPSDSSGDKG- 63

Query: 69  GSRKFNMSDEDWEEMNLRAASAIRTGLPKNILANVHGISTTKELWEKLKVLYQAKGISNR 128
              K  MS+E+WEE+++RAAS IR  L KN+LANV   S+TKELWEKL+ +YQAK +SNR
Sbjct: 64  ---KSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNR 123

Query: 129 LYLKEQFYTLQMEEGTKISNHLSNLNSIIFELEAIEVKIDDEDKTLKLILSLPPPYEHMK 188
           LYLKE+F+ LQMEEGTKIS+HLS LN I+ ELE+I V+IDDEDK L+LI SLP  YEHM+
Sbjct: 124 LYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLPSSYEHMQ 183

Query: 189 RILMYEKDTLNFPEATSKLLSEERRLKSEGRTSHEDSTLEASNWKKKKDSIEKKACCWGC 248
            +LMY K+ +NF E TSKL+SEERRLK+    S E   L     +KK    +KK  CWGC
Sbjct: 184 TVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKGSKKKIICWGC 243

Query: 249 GQSGHMKKDCPS-RADSSKSSGPDADNVSLIRGDDDQ 285
           GQ GH+KKDC +  A+S+  S  DA NV +   +DD+
Sbjct: 244 GQPGHLKKDCKNGGANSANGSKSDATNVVVFENEDDE 274

[Close]

BLAST of Moc05g10880 vs. NCBI nr
Match: KAE8682180.1 (Transcription initiation factor IIA subunit 2 [Hibiscus syriacus])

HSP 1 Score: 283.1 bits (723), Expect = 2.7e-72
Identity = 156/281 (55.52%), Postives = 198/281 (70.46%), Query Frame = 0


Query: 5   MSLVKIDVEKFDGMINFDLWQMQVKDVLIQSGIHKTLKGRPNEGASQKLSGYGGPIESSG 64
           + L + D+EKFDG INF LWQ+QVKD+LIQSG++K LKG+P   +  K      P +SSG
Sbjct: 86  LGLKRFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEP--DKPSDSSG 145

Query: 65  GSSRGSRKFNMSDEDWEEMNLRAASAIRTGLPKNILANVHGISTTKELWEKLKVLYQAKG 124
                  K  MS+E+WEE+++RAAS IR  L KN+LANV   S+TKELWEKL+ +YQAK 
Sbjct: 146 DKG----KSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKS 205

Query: 125 ISNRLYLKEQFYTLQMEEGTKISNHLSNLNSIIFELEAIEVKIDDEDKTLKLILSLPPPY 184
           +SNRLYLKE+F+ LQMEEGTKIS+HLS LN I+ ELE+I V+IDDEDK L+LI SL   Y
Sbjct: 206 LSNRLYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLSSSY 265

Query: 185 EHMKRILMYEKDTLNFPEATSKLLSEERRLKSEGRTSHEDSTLEASNWKKKKDSIEKKAC 244
           EHM+ +LMY K+ +NF E TSKL+SEERRLK+    S E   L     +KK    +KK  
Sbjct: 266 EHMQTVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKGSKKKII 325

Query: 245 CWGCGQSGHMKKDCPS-RADSSKSSGPDADNVSLIRGDDDQ 285
           CWGCGQ GH+KKDC +  A+S+  S  DA NV +   +DD+
Sbjct: 326 CWGCGQPGHLKKDCKNGGANSANGSKSDATNVVVFENEDDE 360

[Close]

BLAST of Moc05g10880 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.6e-35
Identity = 99/309 (32.04%), Postives = 158/309 (51.13%), Query Frame = 0


Query: 5   MSLVKIDVEKFDGMINFDLWQMQVKDVLIQSGIHKTLKGRPNEGASQKLSGYGGPIESSG 64
           MS VK +V KF+G   F  WQ +++D+LIQ G+HK L                  ++S  
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVL-----------------DVDS-- 60

Query: 65  GSSRGSRKFNMSDEDWEEMNLRAASAIRTGLPKNILANVHGISTTKELWEKLKVLYQAKG 124
                 +   M  EDW +++ RAASAIR  L  +++ N+    T + +W +L+ LY +K 
Sbjct: 61  -----KKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKT 120

Query: 125 ISNRLYLKEQFYTLQMEEGTKISNHLSNLNSIIFELEAIEVKIDDEDKTLKLILSLPPPY 184
           ++N+LYLK+Q Y L M EGT   +HL+  N +I +L  + VKI++EDK + L+ SLP  Y
Sbjct: 121 LTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSY 180

Query: 185 EHMKRILMYEKDTLNFPEATSKLLSEERRLK----------SEGR-----TSHEDSTLEA 244
           +++   +++ K T+   + TS LL  E+  K          +EGR      S  +     
Sbjct: 181 DNLATTILHGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSG 240

Query: 245 SNWKKKKDSIEKKACCWGCGQSGHMKKDCPS-RADSSKSSG-----------PDADNVSL 287
           +  K K  S  +   C+ C Q GH K+DCP+ R    ++SG            + DNV L
Sbjct: 241 ARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVL 285

[Close]

BLAST of Moc05g10880 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 67.4 bits (163), Expect = 3.0e-10
Identity = 60/274 (21.90%), Postives = 120/274 (43.80%), Query Frame = 0


Query: 5   MSLVKIDVEKFDGMINFDLWQMQVKDVLIQSGIHKTLKG-RPNEGASQKLSGYGGPIESS 64
           M   K +++ FDG   + +W+ +++ +L +  + K + G  PNE                
Sbjct: 1   MDKAKRNIKPFDGE-KYAIWKFRIRALLAEQDVLKVVDGLMPNE---------------- 60

Query: 65  GGSSRGSRKFNMSDEDWEEMNLRAASAIRTGLPKNILANVHGISTTKELWEKLKVLYQAK 124
                        D+ W++    A S I   L  + L       T +++ E L  +Y+ K
Sbjct: 61  ------------VDDSWKKAERCAKSTIIEYLSDSFLNFATSDITARQILENLDAVYERK 120

Query: 125 GISNRLYLKEQFYTLQMEEGTKISNHLSNLNSIIFELEAIEVKIDDEDKTLKLILSLPPP 184
            ++++L L+++  +L++     + +H    + +I EL A   KI++ DK   L+++LP  
Sbjct: 121 SLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSC 180

Query: 185 YEH-MKRILMYEKDTLNFPEATSKLLSEERRLKSEGRTS---------HEDSTLEASNWK 244
           Y+  +  I    ++ L      ++LL +E ++K++   +         H ++    +N  
Sbjct: 181 YDGIITAIETLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLF 240

Query: 245 KK---------KDSIEKKACCWGCGQSGHMKKDC 259
           K          K + + K  C  CG+ GH+KKDC
Sbjct: 241 KNRVTKPKKIFKGNSKYKVKCHHCGREGHIKKDC 245

[Close]

BLAST of Moc05g10880 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.7e-117
Identity = 222/261 (85.06%), Postives = 237/261 (90.80%), Query Frame = 0


Query: 1   MSFFMSLVKIDVEKFDGMINFDLWQMQVKDVLIQSGIHKTLKGRPNEGASQKLSGYGGPI 60
           MSFFMS VKIDVEKFDGMINF LWQ+QVKDVLIQS +HK LKGRP+EGAS+KLS  GGP+
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ESSGGSSRGSRKFNMSDEDWEEMNLRAASAIRTGLPKNILANVHGISTTKELWEKLKVLY 120
           ESSGGSSRGS+K +MS EDWEEM+LRAASAIRT L KNILANVH IST KELWEKL+ LY
Sbjct: 355 ESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALY 414

Query: 121 QAKGISNRLYLKEQFYTLQMEEGTKISNHLSNLNSIIFELEAIEVKIDDEDKTLKLILSL 180
           QAKGISNRLYLKEQF+TLQMEEG KIS+HLSNLNSIIFELEAIEVKIDDEDK L+LILSL
Sbjct: 415 QAKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSL 474

Query: 181 PPPYEHMKRILMYEKDTLNFPEATSKLLSEERRLKSEGRTSHEDSTLEASNWKKKKDSIE 240
           P  YEHMK ILMY KDTLNF E TSKLLSEERRLKSEGRTSHEDS L  SNWKKKKDS++
Sbjct: 475 PXSYEHMKPILMYGKDTLNFAEVTSKLLSEERRLKSEGRTSHEDSALVVSNWKKKKDSVQ 534

Query: 241 KKACCWGCGQSGHMKKDCPSR 262
           KKACCWGCGQSGHMKKDCP+R
Sbjct: 535 KKACCWGCGQSGHMKKDCPNR 555

[Close]

BLAST of Moc05g10880 vs. ExPASy TrEMBL
Match: A0A6A3BK59 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110050pilonHSYRG00143 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 3.4e-73
Identity = 156/277 (56.32%), Postives = 197/277 (71.12%), Query Frame = 0


Query: 9   KIDVEKFDGMINFDLWQMQVKDVLIQSGIHKTLKGRPNEGASQKLSGYGGPIESSGGSSR 68
           + D+EKFDG INF LWQ+QVKD+LIQSG++K LKG+P   +  K      P +SSG    
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEP--DKPSDSSGDKG- 63

Query: 69  GSRKFNMSDEDWEEMNLRAASAIRTGLPKNILANVHGISTTKELWEKLKVLYQAKGISNR 128
              K  MS+E+WEE+++RAAS IR  L KN+LANV   S+TKELWEKL+ +YQAK +SNR
Sbjct: 64  ---KSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNR 123

Query: 129 LYLKEQFYTLQMEEGTKISNHLSNLNSIIFELEAIEVKIDDEDKTLKLILSLPPPYEHMK 188
           LYLKE+F+ LQMEEGTKIS+HLS LN I+ ELE+I V+IDDEDK L+LI SLP  YEHM+
Sbjct: 124 LYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLPSSYEHMQ 183

Query: 189 RILMYEKDTLNFPEATSKLLSEERRLKSEGRTSHEDSTLEASNWKKKKDSIEKKACCWGC 248
            +LMY K+ +NF E TSKL+SEERRLK+    S E   L     +KK    +KK  CWGC
Sbjct: 184 TVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKGSKKKIICWGC 243

Query: 249 GQSGHMKKDCPS-RADSSKSSGPDADNVSLIRGDDDQ 285
           GQ GH+KKDC +  A+S+  S  DA NV +   +DD+
Sbjct: 244 GQPGHLKKDCKNGGANSANGSKSDATNVVVFENEDDE 274

[Close]

BLAST of Moc05g10880 vs. ExPASy TrEMBL
Match: A0A6A2YS90 (Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111273pilonHSYRG00172 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 156/281 (55.52%), Postives = 198/281 (70.46%), Query Frame = 0


Query: 5   MSLVKIDVEKFDGMINFDLWQMQVKDVLIQSGIHKTLKGRPNEGASQKLSGYGGPIESSG 64
           + L + D+EKFDG INF LWQ+QVKD+LIQSG++K LKG+P   +  K      P +SSG
Sbjct: 86  LGLKRFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEP--DKPSDSSG 145

Query: 65  GSSRGSRKFNMSDEDWEEMNLRAASAIRTGLPKNILANVHGISTTKELWEKLKVLYQAKG 124
                  K  MS+E+WEE+++RAAS IR  L KN+LANV   S+TKELWEKL+ +YQAK 
Sbjct: 146 DKG----KSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKS 205

Query: 125 ISNRLYLKEQFYTLQMEEGTKISNHLSNLNSIIFELEAIEVKIDDEDKTLKLILSLPPPY 184
           +SNRLYLKE+F+ LQMEEGTKIS+HLS LN I+ ELE+I V+IDDEDK L+LI SL   Y
Sbjct: 206 LSNRLYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLSSSY 265

Query: 185 EHMKRILMYEKDTLNFPEATSKLLSEERRLKSEGRTSHEDSTLEASNWKKKKDSIEKKAC 244
           EHM+ +LMY K+ +NF E TSKL+SEERRLK+    S E   L     +KK    +KK  
Sbjct: 266 EHMQTVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKGSKKKII 325

Query: 245 CWGCGQSGHMKKDCPS-RADSSKSSGPDADNVSLIRGDDDQ 285
           CWGCGQ GH+KKDC +  A+S+  S  DA NV +   +DD+
Sbjct: 326 CWGCGQPGHLKKDCKNGGANSANGSKSDATNVVVFENEDDE 360

[Close]

BLAST of Moc05g10880 vs. ExPASy TrEMBL
Match: A0A6A3CWI3 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001713pilonHSYRG00162 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.9e-72
Identity = 155/277 (55.96%), Postives = 195/277 (70.40%), Query Frame = 0


Query: 9   KIDVEKFDGMINFDLWQMQVKDVLIQSGIHKTLKGRPNEGASQKLSGYGGPIESSGGSSR 68
           + D+EKFDG INF LWQ+QVKD+LIQSG++K LKG+P   +  K      P +SSG    
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEP--DKPSDSSGDKG- 63

Query: 69  GSRKFNMSDEDWEEMNLRAASAIRTGLPKNILANVHGISTTKELWEKLKVLYQAKGISNR 128
              K  MS+E+WEE+++RAAS IR  L KN+LANV   S+TKELWEKL+ +YQAK +SNR
Sbjct: 64  ---KSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNR 123

Query: 129 LYLKEQFYTLQMEEGTKISNHLSNLNSIIFELEAIEVKIDDEDKTLKLILSLPPPYEHMK 188
           LYLKE+F+ LQMEEGTKIS+HLS LN I+ ELE+I V IDDEDK L+LI SLP  YEHM+
Sbjct: 124 LYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVDIDDEDKALRLIWSLPSSYEHMQ 183

Query: 189 RILMYEKDTLNFPEATSKLLSEERRLKSEGRTSHEDSTLEASNWKKKKDSIEKKACCWGC 248
            +LMY K+ +NF E TSKL+SEERRLK+    S E   L     +KK    +KK  CWGC
Sbjct: 184 TVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVCGNRKKYKGSKKKIICWGC 243

Query: 249 GQSGHMKKDCPS-RADSSKSSGPDADNVSLIRGDDDQ 285
           GQ GH+KKDC +  A+ +  S  DA NV +   +DD+
Sbjct: 244 GQPGHLKKDCKNGGANLANGSKSDATNVVVFENEDDE 274

[Close]

BLAST of Moc05g10880 vs. ExPASy TrEMBL
Match: A0A6A3DA47 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000132pilonHSYRG00093 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.9e-72
Identity = 154/278 (55.40%), Postives = 196/278 (70.50%), Query Frame = 0


Query: 9   KIDVEKFDGMINFDLWQMQVKDVLIQSGIHKTLKGRPNEGASQKLSGYGGPIESSGGSSR 68
           + D+EKFDG INF LWQ+QVKD+LIQSG++K LKG+P        S + G        S 
Sbjct: 4   RFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKP-------ASLFEGKEPDKPSDSS 63

Query: 69  GSR-KFNMSDEDWEEMNLRAASAIRTGLPKNILANVHGISTTKELWEKLKVLYQAKGISN 128
           G + K  MS+E+WEE+++RAAS IR  L KN+LANV   S+TKELWEKL+ +YQAK +SN
Sbjct: 64  GDKGKSKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSN 123

Query: 129 RLYLKEQFYTLQMEEGTKISNHLSNLNSIIFELEAIEVKIDDEDKTLKLILSLPPPYEHM 188
           RLYLKE+F+ LQMEEGTKIS+HLS LN I+ ELE+I V+IDDEDK L+LI SLP  YEHM
Sbjct: 124 RLYLKEKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLPSSYEHM 183

Query: 189 KRILMYEKDTLNFPEATSKLLSEERRLKSEGRTSHEDSTLEASNWKKKKDSIEKKACCWG 248
           + +LMY K+ +NF E TSKL+SEERRLK+    S E   L     +KK    ++K  CWG
Sbjct: 184 QTVLMYGKENVNFSEVTSKLISEERRLKNGENKSSESGALSVFGNRKKYKGSKRKIICWG 243

Query: 249 CGQSGHMKKDCPS-RADSSKSSGPDADNVSLIRGDDDQ 285
           CGQ GH+KKDC +  A+S+  S  DA NV +   +DD+
Sbjct: 244 CGQPGHLKKDCKNGGANSANGSKSDATNVVVFENEDDE 274

The following BLAST results are available for this feature:

BLAST of Moc05g10880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	3.5e-117	85.06	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
KAF5765959.1	1.7e-74	58.12	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
KAF5758504.1	1.1e-73	57.76	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
KAE8717380.1	7.0e-73	56.32	hypothetical protein F3Y22_tig00110050pilonHSYRG00143 [Hibiscus syriacus]	[more]
KAE8682180.1	2.7e-72	55.52	Transcription initiation factor IIA subunit 2 [Hibiscus syriacus]	[more]

BLAST of Moc05g10880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.6e-35	32.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.0e-10	21.90	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Moc05g10880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	1.7e-117	85.06	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6A3BK59	3.4e-73	56.32	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A6A2YS90	1.3e-72	55.52	Transcription initiation factor IIA subunit 2 OS=Hibiscus syriacus OX=106335 GN=...	[more]
A0A6A3CWI3	2.9e-72	55.96	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A6A3DA47	2.9e-72	55.40	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]

BLAST of Moc05g10880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 244..260 e-value: 0.0033 score: 26.5
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 245..260 score: 10.822997
None	No IPR available	GENE3D	4.10.60.10		coord: 237..279 e-value: 7.9E-6 score: 28.1
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 80..216 e-value: 4.4E-33 score: 114.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..73
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 5..249
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 5..249
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 238..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g10880.1	Moc05g10880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008270	zinc ion binding