Moc05g10780 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g10780
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr5: 8498515 .. 8498772 (+)
RNA-Seq Expression	Moc05g10780
Synteny	Moc05g10780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCACAGGTTCGACGAGCAGGTCGAGGCGCTCAAAGCCAGGTGCGAGAAGAAAGAGTGCTCGTTTGACGATGGCGACCTGGGAGAATCACCATTCACCTCGGACATCCTGGAGGCTCCAATCCCTCCAAAGTTTAAAACTCCCGCCATGAAACCTTATGATGGGTCTAAAGACCCAAAGGACTATGTGGAGGTCTTCAAGGGCCTCATGGACTTTCAGGCGGCAACAGATGCGATCAAATGTCGCGCCTTCTAG

mRNA sequence

ATGAAGCACAGGTTCGACGAGCAGGTCGAGGCGCTCAAAGCCAGGTGCGAGAAGAAAGAGTGCTCGTTTGACGATGGCGACCTGGGAGAATCACCATTCACCTCGGACATCCTGGAGGCTCCAATCCCTCCAAAGTTTAAAACTCCCGCCATGAAACCTTATGATGGGTCTAAAGACCCAAAGGACTATGTGGAGGTCTTCAAGGGCCTCATGGACTTTCAGGCGGCAACAGATGCGATCAAATGTCGCGCCTTCTAG

Coding sequence (CDS)

ATGAAGCACAGGTTCGACGAGCAGGTCGAGGCGCTCAAAGCCAGGTGCGAGAAGAAAGAGTGCTCGTTTGACGATGGCGACCTGGGAGAATCACCATTCACCTCGGACATCCTGGAGGCTCCAATCCCTCCAAAGTTTAAAACTCCCGCCATGAAACCTTATGATGGGTCTAAAGACCCAAAGGACTATGTGGAGGTCTTCAAGGGCCTCATGGACTTTCAGGCGGCAACAGATGCGATCAAATGTCGCGCCTTCTAG

Protein sequence

MKHRFDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPAMKPYDGSKDPKDYVEVFKGLMDFQAATDAIKCRAF

Homology

[Close]

BLAST of Moc05g10780 vs. NCBI nr
Match: XP_022159250.1 (uncharacterized protein LOC111025663 [Momordica charantia])

HSP 1 Score: 175.3 bits (443), Expect = 2.3e-40
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MKHRFDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPAMKPYDGSKDP 60
          MKH+FDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTP MKPYDGSKDP
Sbjct: 1  MKHKFDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPTMKPYDGSKDP 60

Query: 61 KDYVEVFKGLMDFQAATDAIKCRAF 86
          KDYVEVF+GLMDFQAATDAIKCRAF
Sbjct: 61 KDYVEVFEGLMDFQAATDAIKCRAF 85

[Close]

BLAST of Moc05g10780 vs. NCBI nr
Match: XP_022157897.1 (uncharacterized protein LOC111024503 [Momordica charantia])

HSP 1 Score: 164.5 bits (415), Expect = 4.1e-37
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1   MKHRFDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPAMKPYDGSKDP 60
           MKHRFDEQVEALKA+CEKKECSFDDGDLGESPFTSDILE PIPPKFKTP MK YD SKDP
Sbjct: 511 MKHRFDEQVEALKAKCEKKECSFDDGDLGESPFTSDILEVPIPPKFKTPTMKLYDRSKDP 570

Query: 61  KDYVEVFKGLMDFQAATDAIKCRAF 86
           KDYVEVF+GLMDFQAATDAIKC AF
Sbjct: 571 KDYVEVFEGLMDFQAATDAIKCSAF 595

[Close]

BLAST of Moc05g10780 vs. NCBI nr
Match: XP_022155139.1 (uncharacterized protein LOC111022280 [Momordica charantia])

HSP 1 Score: 164.5 bits (415), Expect = 4.1e-37
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1   MKHRFDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPAMKPYDGSKDP 60
           MKHRFDEQVEALKARCEKKE  FDD DLGESPFTSDI+EAPIPPKFKTP MKPYDGSKDP
Sbjct: 92  MKHRFDEQVEALKARCEKKESPFDDDDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDP 151

Query: 61  KDYVEVFKGLMDFQAATDAIKCRAF 86
           KDYVEVF+GLMDFQAATDAIKC AF
Sbjct: 152 KDYVEVFEGLMDFQAATDAIKCLAF 176

[Close]

BLAST of Moc05g10780 vs. NCBI nr
Match: XP_022156088.1 (uncharacterized protein LOC111023060 [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 1.9e-34
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1   MKHRFDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPAMKPYDGSKDP 60
           +K +FD QVEALK RCEKKE +FDDGDLGESPFTSDILEA IPPKFKTP MK YDGSKDP
Sbjct: 107 LKSKFDAQVEALKVRCEKKESAFDDGDLGESPFTSDILEASIPPKFKTPTMKSYDGSKDP 166

Query: 61  KDYVEVFKGLMDFQAATDAIKCRAF 86
           KDYVEVF+GLMDFQAATDAIKCRAF
Sbjct: 167 KDYVEVFEGLMDFQAATDAIKCRAF 191

[Close]

BLAST of Moc05g10780 vs. NCBI nr
Match: XP_022151719.1 (uncharacterized protein LOC111019634 [Momordica charantia])

HSP 1 Score: 153.3 bits (386), Expect = 9.4e-34
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1   MKHRFDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPAMKPYDGSKDP 60
           +K +FD QVEALKA+CEKKE SFDDGDLGESPFTSDILEA IP KFKTP MKPYDGSKDP
Sbjct: 115 LKSKFDAQVEALKAKCEKKESSFDDGDLGESPFTSDILEALIPLKFKTPTMKPYDGSKDP 174

Query: 61  KDYVEVFKGLMDFQAATDAIKCRAF 86
           KDYVEVF+GLMDFQAATDAIKCR F
Sbjct: 175 KDYVEVFEGLMDFQAATDAIKCRDF 199

[Close]

BLAST of Moc05g10780 vs. ExPASy TrEMBL
Match: A0A6J1DY58 (uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025663 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MKHRFDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPAMKPYDGSKDP 60
          MKH+FDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTP MKPYDGSKDP
Sbjct: 1  MKHKFDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPTMKPYDGSKDP 60

Query: 61 KDYVEVFKGLMDFQAATDAIKCRAF 86
          KDYVEVF+GLMDFQAATDAIKCRAF
Sbjct: 61 KDYVEVFEGLMDFQAATDAIKCRAF 85

[Close]

BLAST of Moc05g10780 vs. ExPASy TrEMBL
Match: A0A6J1DPC9 (uncharacterized protein LOC111022280 OS=Momordica charantia OX=3673 GN=LOC111022280 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1   MKHRFDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPAMKPYDGSKDP 60
           MKHRFDEQVEALKARCEKKE  FDD DLGESPFTSDI+EAPIPPKFKTP MKPYDGSKDP
Sbjct: 92  MKHRFDEQVEALKARCEKKESPFDDDDLGESPFTSDIMEAPIPPKFKTPTMKPYDGSKDP 151

Query: 61  KDYVEVFKGLMDFQAATDAIKCRAF 86
           KDYVEVF+GLMDFQAATDAIKC AF
Sbjct: 152 KDYVEVFEGLMDFQAATDAIKCLAF 176

[Close]

BLAST of Moc05g10780 vs. ExPASy TrEMBL
Match: A0A6J1DVR0 (uncharacterized protein LOC111024503 OS=Momordica charantia OX=3673 GN=LOC111024503 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1   MKHRFDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPAMKPYDGSKDP 60
           MKHRFDEQVEALKA+CEKKECSFDDGDLGESPFTSDILE PIPPKFKTP MK YD SKDP
Sbjct: 511 MKHRFDEQVEALKAKCEKKECSFDDGDLGESPFTSDILEVPIPPKFKTPTMKLYDRSKDP 570

Query: 61  KDYVEVFKGLMDFQAATDAIKCRAF 86
           KDYVEVF+GLMDFQAATDAIKC AF
Sbjct: 571 KDYVEVFEGLMDFQAATDAIKCSAF 595

[Close]

BLAST of Moc05g10780 vs. ExPASy TrEMBL
Match: A0A6J1DPN4 (uncharacterized protein LOC111023060 OS=Momordica charantia OX=3673 GN=LOC111023060 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.2e-35
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1   MKHRFDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPAMKPYDGSKDP 60
           +K +FD QVEALK RCEKKE +FDDGDLGESPFTSDILEA IPPKFKTP MK YDGSKDP
Sbjct: 107 LKSKFDAQVEALKVRCEKKESAFDDGDLGESPFTSDILEASIPPKFKTPTMKSYDGSKDP 166

Query: 61  KDYVEVFKGLMDFQAATDAIKCRAF 86
           KDYVEVF+GLMDFQAATDAIKCRAF
Sbjct: 167 KDYVEVFEGLMDFQAATDAIKCRAF 191

[Close]

BLAST of Moc05g10780 vs. ExPASy TrEMBL
Match: A0A6J1DDW5 (uncharacterized protein LOC111019634 OS=Momordica charantia OX=3673 GN=LOC111019634 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.6e-34
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1   MKHRFDEQVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPAMKPYDGSKDP 60
           +K +FD QVEALKA+CEKKE SFDDGDLGESPFTSDILEA IP KFKTP MKPYDGSKDP
Sbjct: 115 LKSKFDAQVEALKAKCEKKESSFDDGDLGESPFTSDILEALIPLKFKTPTMKPYDGSKDP 174

Query: 61  KDYVEVFKGLMDFQAATDAIKCRAF 86
           KDYVEVF+GLMDFQAATDAIKCR F
Sbjct: 175 KDYVEVFEGLMDFQAATDAIKCRDF 199

The following BLAST results are available for this feature:

BLAST of Moc05g10780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159250.1	2.3e-40	96.47	uncharacterized protein LOC111025663 [Momordica charantia]	[more]
XP_022157897.1	4.1e-37	91.76	uncharacterized protein LOC111024503 [Momordica charantia]	[more]
XP_022155139.1	4.1e-37	91.76	uncharacterized protein LOC111022280 [Momordica charantia]	[more]
XP_022156088.1	1.9e-34	87.06	uncharacterized protein LOC111023060 [Momordica charantia]	[more]
XP_022151719.1	9.4e-34	87.06	uncharacterized protein LOC111019634 [Momordica charantia]	[more]

BLAST of Moc05g10780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g10780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DY58	1.1e-40	96.47	uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DPC9	2.0e-37	91.76	uncharacterized protein LOC111022280 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DVR0	2.0e-37	91.76	uncharacterized protein LOC111024503 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DPN4	9.2e-35	87.06	uncharacterized protein LOC111023060 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DDW5	4.6e-34	87.06	uncharacterized protein LOC111019634 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]

BLAST of Moc05g10780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g10780.1	Moc05g10780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity