Moc05g08650 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g08650
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr5: 6604766 .. 6609470 (-)
RNA-Seq Expression	Moc05g08650
Synteny	Moc05g08650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTGCTACAAAGAAAAGCGAAGCCAGCAAGAGAGGAAGAAAGACAGTCGAAGAAGAGAAACAGAGGGTCGGAGAAGAGGAACAGACGGTTGGAGAAGAGGAACGGATGGTCAAAGGAAGGAAAACTGACGGTCGGAGGAAGAAATAAAAACGAGGAAGAAGAAAGGGTTGAGTTTCGAAAATGGATGGGTTTTTGGGTTTTGGGATTTTTTAATTTTTGAAAGTATCATTAGCACATTTTAAGGGATTTGATCTCTTAATTTACCAATTCTAAATTTTAATAATTATTTAAAATTGAGATGGATACTAAGGATAATTTGTGTTATGAGTACCATCGAGGATTGTTTCATGACAAAAGAGTAAATTCTATACTTTTCCTATGATTTCTAAATAGATCCTCTATGTACTAATTTCTTTTTAAAGCTTGGATTGAGGCCCAATCCATGACAAACTCAATCCAATGAAATATGCACGTGGGTATCATGAATGATTCAGCTTCATCATCGAGCCCGAAACCCAAAAGTCGGCCCATGCTCAGCCTCTACTCAATCCAAATTTGGTATAAGGTAAACGTTTGATCGGTCTGATCCAACCCAGTCTATTCATAAATTGGATTGGATATAGATCTTAGCCTTTTAAATTGGACTGGCCCATGGGCTGATCCATTTAGAACGTATTTGGATCGACTCATTGGCGGCCCAAAAGCCAAATCTAATAATATAATCACATAATATATATATATATATTTAAAACTAAAATAAATTAAGTTGTAAAAACAGGATATACCAAAATTTATTGATAACCTTTTAAAAAATAAAATAAATTACAAAAGAATAAAATAAATACACAAAGTTTGAAAAATAATTAAAAAAAAATGATTATATGGACTAATTCAAGCCCGATACAATTTTTGCCCATTAAGTTAGACTCATAGATTGAGCCATAGGCCTAAGTTTTAGTGGTTGAGCTGGGTAATCCGACCAAAACAATGTTGAGGCCTGTAAAGGTTGGACCTGGGTCGAGCTCAGGCTTTTTCTTCTTTCGACTGAGCTGGGCTGGCCTGACCCAATGAGGAAGCTGATGTAAATGTAATCGCAACATAAATCTCTTCGTAGTTATAATTAGTATAACGACCATCATTTTTTTGGAATTATTTAATTAATTTATTTTTTCTGATTTTACCTTCTATGGATTAATAGGAACCAAAAATCTTATGGTAAGTGATACCACAGAGACCAAAGAGACTACTGCATATAATCTTTAGTTTATTTAATTTTGATTATGTAACTTGATTTCCCTAATATTATGATACATATTTTTTCTATAGCATTTGTTATTTGAAAAAATTGAAAAAACCAAGTATTTATATAGGTATTTTGTTTTAAGGGTATATTTGTCCAAAATAAATTTTAGAACTCTAAAAAAAAATGACAGTTAATCATTTTTATAACAACTAATACTTTTAGCTATTTTTTTAAAAAACGTTTTTTATTTTATTTTATTTTGGTCATTCTTGCCGTTGTCCCATGATATTATTACTTTGAACCTAAGCTTACATTACTAGTTGTACCAAAAAACAACCACATATCAAAAGATATGTTATTTTTACTCTTATACTATCAACCCTCTGGTTTCCTAGAACAAAAGGACCACTGAACTTCTTCAAAATAGTTACCCGTCCATCCACTCTTAGTCAATGGTGGATCTAGAATTTAATGTCGGGGCACAAATTCATATGCATAATGAAAAAAAAAATCAAATTTAACCATGTACTTAGCAAAATGTGCATAAATTTTTTTATCATAAACTTTCAATTTCATCAAAGTACATCTTAAACAACTTAGAGTAAGTGTGTTGCAATCTTCACCTTAAACTTTAAAAAGTATCGCAATTTTTAACCTTTGATAGATTATTAGAAAATTTAAAAAAATATATTATCATACGTATCAAATAATTATAAAACATATAGTTGATATGAAATTGATAGAATTTAGACAAAAACAACAATAGAACTATTTTTTGTTGGTTGAATTTTGTAAGTGTTCATATGAGATTTTCGAAGAAATTTGTTTCGTGCAGTTGAACTTTAATTTTGGATGTTTTTGTATAGTAGTGTAAATGCAATATCTAGTCTTTATCTTCTGATTCTTTTTCTCGAACTTGATTTGAATATTAAGTTCTTATTCTTGAACTTTGATCAAAGTCTTCTGTGCTTCAAAAGTCTTCAAATCTTCGAAGTCTTCAAATCTTCCAAGAGAAAATCTTCAATCTTTTGAATTCTCAAATATTTAAACGCTTTGAAACGAGTGTGACTCTTCTATCTATAGAGTTTTGCACAATTAATGGATTTGACTTGGGTGATTTTGGACCCAACCTATAGACTTAGGCTTTATTTGGGTAATGGACCCAATTAGTAGGTAGCTTGGATGATTTTGACCTAATCCCTAAACTCGGGCTTGGGTAATTTTACACTCAACCCAATTAACGTTTCGAGGCTTTCCTAGGAATAGAATCATTTGATGATAACAAAGATGTATTTCCTTATCAGAGAGGAGCCCCAATGGAAGCAGGGATTTTTTCTTTTCTAATCAGTTTGGGGGGAAGGAGGAAAGGCACGGAAACAGGATGTTTAGGGGATCTCCTTAGTCCCAGAGTGAGAGTGTCGATGAACTCCACTTGGGAGTAGTGTCAGTATGTTCAGTCAAAATAAGAGAAGTAAGTCGCGAAAGATAAGTCTTCAATTATGTAAGTCAACTTAGATTTTTTTTTTTTGGAAAAATATGAGAGTCAATTCAATAAAAAGTACGTGAGGAATATACAAAAGGAGGCTATATGAAAGCATTCTGGTACAAATATCGTAATTACAAAAAGAGGAGGACTTGGAGGACCAAGTAGCAAGATGCTGAAACTTTAATGTCCTACAAAGATGAGTGAATGACGAATTACGATCAGAGAATATCCGGTTGTCACGCTCTAGCCAAATATGCCAAGTCTATTATTGATCCGCTAAATTTGTCTTGGATAACTTGGTGAGAAGTCCAAATTATCATCTAATAGATTTTCAGATTGATTTAATTCTGGGTCCAATTTTCACATGATCCAAATTCGATCGATTAAATCTTTTTTAGGATGTACGAAAATTTTTTTTACCCTAAATTTAATAACATATAACTTTGTCATTAATATAAATCCGACTGGAGTTCTTAAGCTTATTGGCCGTTGGGAATTAATATGGAGCCAAAATTAAAAGAAGTAATGAAGGAGCTTAATGGGCATAAGTACAAAAAGCCCAAGTGCCCAACACTTTCCGATTTTTATTAATTTGTGTGCCACCTCTTCACTTTTGCGTGCCTTTCTTTTTTATCGTGAGAGTGAGAATTTTTTTACAGAGAAGGAGGCCGTTTTCGAGGGAGCCATTCTCTGAGCTTTACAGAGAGCTCTATGAGAAAATTTCGTGAGAAATTTTTGTCCAATCAAAGAGTTTTAAAAGCTTGTAAGAGTGATTTGTGAGCATTTTTCTTTGAGAGAAAAGTGAGAGAAATAATTGTGGAGCGTTTGTAAACTCTTGAAAATTCTTCTGGCATTTAGTGGAACCTGCAACGGTAGCAGAGAACTAGATGTAGCCCACATTGGGTGAACCAGTATAATTCCGGTGTCGATTTCTCTTCTCTATATTTTATTGTTCTTGTTGCTTGAGATTTAGGTTGGTTTATCTACTCTTTGAGCATAGTTTCAATTTGATTTATTTCTATTATAATTAGAAGAAGAACCTGATCTGGGATTAGTTAGCATATATTGTATGGAATTGTGATTGAGATAATATTTGTTAGCTTGTTTTATCCCTAACAAGTGGTATTAGAGCGAGGTTGAAGAACAATGGAAGTGGACGACAAATTGGTCACTTTTAATGGGTCAGATTTTTCATTTTGGAAAAATCAGGTATTAGATTATTTGCACTCGAAAGAGTTGGAATTGCCATTAGAAGGAAAGCCGGATGATATGAGAGAAAAAGAATGGAAGAAGTTGGACATGAAAGTGTTGGGTACAACTCGCCTGACATTAACTAAAAATGTTCAGAGCAGCGTGACGAAGGAGACGACCACAATGGGGTTCATAAATGCCCTGGCCAACATGTATGAAAAACCCTAGGTAAATAACAAGGTGTATCTCGCAACTAAATTTTTTAATTTGAAAATGGCTGAAGGTACATCTATTACTGCCCATTTAAATAAGTTTGACGCATTGATTAATAAACTGGTAACTGTTGATTTAGAATTCATTGGTGAAGTTTATGCTATTTTGTTATTAAGATCTTTGCCTGTTAGTTGGGAACCCATGCGAGCTGCTATTTCTAATTCTTGTGGGAAAGAGAAATTGAAATTTGAAGATGTTAGAGATGCAGCTCTTGCAGAAAAAATTCGCAGGAAGGACTCTGGTATTGCTTCTACTTCTGGTTCAGTATTGAATGTGGACAGAAGAAGAAATAATAACAGAGGTTATGGGAATCGAGGCAAGTCGAAAAACAACAGAAGCAGGTCGAGAAACAGCAGGTTTGAGTGTTGGAATTGTGGTAAGATTGGACATTTGAACAGGAATTGCAAGGCCCCGAAGAAAAATGATGGGAACGAAGCCGGTGCTAATGTTGCTGAGCAGATACACGATGCTTTGATTCTTGCAGTTGAGAGCGCTCATGACACATGA

mRNA sequence

ATGCTCTTGCTACAAAGAAAAGCGAAGCCAGCAAGAGAGGAAGAAAGACAGTCGAAGAAGAGAAACAGAGGGTCGGAGAAGAGGAACAGACGGTTGGAGAAGAGGAACGGATGGTCAAAGGAAGGAAAACTGACGGTATTAGATTATTTGCACTCGAAAGAGTTGGAATTGCCATTAGAAGGAAAGCCGGATGATATGAGAGAAAAAGAATGGAAGAAGTTGGACATGAAAGTGTTGGGTACAACTCGCCTGACATTAACTAAAAATGTTCAGAGCAGCGTGACGAAGGAGACGACCACAATGGGGTTCATAAATGCCCTGGCCAACATATCTTTGCCTGTTAGTTGGGAACCCATGCGAGCTGCTATTTCTAATTCTTGTGGGAAAGAGAAATTGAAATTTGAAGATGTTAGAGATGCAGCTCTTGCAGAAAAAATTCGCAGGAAGGACTCTGGTATTGCTTCTACTTCTGGTTCAGTATTGAATGTGGACAGAAGAAGAAATAATAACAGAGGTTATGGGAATCGAGGCAAGTCGAAAAACAACAGAAGCAGGTCGAGAAACAGCAGGTTTGAGTGTTGGAATTGTGGTAAGATTGGACATTTGAACAGGAATTGCAAGGCCCCGAAGAAAAATGATGGGAACGAAGCCGGTGCTAATGTTGCTGAGCAGATACACGATGCTTTGATTCTTGCAGTTGAGAGCGCTCATGACACATGA

Coding sequence (CDS)

ATGCTCTTGCTACAAAGAAAAGCGAAGCCAGCAAGAGAGGAAGAAAGACAGTCGAAGAAGAGAAACAGAGGGTCGGAGAAGAGGAACAGACGGTTGGAGAAGAGGAACGGATGGTCAAAGGAAGGAAAACTGACGGTATTAGATTATTTGCACTCGAAAGAGTTGGAATTGCCATTAGAAGGAAAGCCGGATGATATGAGAGAAAAAGAATGGAAGAAGTTGGACATGAAAGTGTTGGGTACAACTCGCCTGACATTAACTAAAAATGTTCAGAGCAGCGTGACGAAGGAGACGACCACAATGGGGTTCATAAATGCCCTGGCCAACATATCTTTGCCTGTTAGTTGGGAACCCATGCGAGCTGCTATTTCTAATTCTTGTGGGAAAGAGAAATTGAAATTTGAAGATGTTAGAGATGCAGCTCTTGCAGAAAAAATTCGCAGGAAGGACTCTGGTATTGCTTCTACTTCTGGTTCAGTATTGAATGTGGACAGAAGAAGAAATAATAACAGAGGTTATGGGAATCGAGGCAAGTCGAAAAACAACAGAAGCAGGTCGAGAAACAGCAGGTTTGAGTGTTGGAATTGTGGTAAGATTGGACATTTGAACAGGAATTGCAAGGCCCCGAAGAAAAATGATGGGAACGAAGCCGGTGCTAATGTTGCTGAGCAGATACACGATGCTTTGATTCTTGCAGTTGAGAGCGCTCATGACACATGA

Protein sequence

MLLLQRKAKPAREEERQSKKRNRGSEKRNRRLEKRNGWSKEGKLTVLDYLHSKELELPLEGKPDDMREKEWKKLDMKVLGTTRLTLTKNVQSSVTKETTTMGFINALANISLPVSWEPMRAAISNSCGKEKLKFEDVRDAALAEKIRRKDSGIASTSGSVLNVDRRRNNNRGYGNRGKSKNNRSRSRNSRFECWNCGKIGHLNRNCKAPKKNDGNEAGANVAEQIHDALILAVESAHDT

Homology

[Close]

BLAST of Moc05g08650 vs. NCBI nr
Match: XP_022152845.1 (uncharacterized protein LOC111020469 [Momordica charantia])

HSP 1 Score: 304.3 bits (778), Expect = 9.3e-79
Identity = 175/265 (66.04%), Postives = 183/265 (69.06%), Query Frame = 0


Query: 34  KRNGWSKEGKLTVLDYLHSKELELPLEGKPDDMREKEWKKLDMKVLGTTRLTLTKNVQSS 93
           K+        + VLDYLHSKELE PLEGKPDDM EKEWKKLD KVLGT RLTLTKNVQSS
Sbjct: 565 KKKSNDNHPNIVVLDYLHSKELEFPLEGKPDDMGEKEWKKLDRKVLGTIRLTLTKNVQSS 624

Query: 94  VTKETTTMGFINALANI------------------------------------------- 153
           V K TTTMG +NALAN+                                           
Sbjct: 625 VAK-TTTMGLMNALANMYEKASVNNKVYLATKFFNLKMAESTPITAHLNEFDVLINKLVA 684

Query: 154 ----------------SLPVSWEPMRAAISNSCGKEKLKFEDVRDAALAEKIRRKDSGIA 213
                           SLP SWEPMRAAISNSC KEKLKFEDVRDAALAE+IRRKDSGIA
Sbjct: 685 VDLEFSHEVYAILLLRSLPDSWEPMRAAISNSCEKEKLKFEDVRDAALAEEIRRKDSGIA 744

Query: 214 STSGSVLNVDRRRNNNRGYGNRGKSKNNRSRSRNSRFECWNCGKIGHLNRNCKAPKKNDG 240
            TSGSVLNVDR RNNNRGYGNRGKSKNNRSRSRNSRFECWNCGKIGHL  NCKAPKKN+G
Sbjct: 745 PTSGSVLNVDRGRNNNRGYGNRGKSKNNRSRSRNSRFECWNCGKIGHLKSNCKAPKKNEG 804

[Close]

BLAST of Moc05g08650 vs. NCBI nr
Match: CAN65867.1 (hypothetical protein VITISV_034935 [Vitis vinifera])

HSP 1 Score: 175.3 bits (443), Expect = 6.5e-40
Identity = 102/216 (47.22%), Postives = 141/216 (65.28%), Query Frame = 0


Query: 43  KLTVLDYLHSKELELPLEG-KPDDMREKEWKKLDMKVLGTTRLTLTKNVQSSVTKETTTM 102
           ++ + DYL+ ++L LPL G KP+ M+ +EW  LD +VLG  RLTL+++V  +V KE TT 
Sbjct: 23  RMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTA 82

Query: 103 GFINALANI-------------SLPVSWEPMRAAISNSCGKEKLKFEDVRDAALAEKIRR 162
             + AL+ I             SLP SWE MR A+SNS GKEKLK+ D+RD  LAE+IRR
Sbjct: 83  DLMKALSEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRR 142

Query: 163 KDSGIASTSGSVLNVDRR-----RNNNRGYGNRGKSKNNRSRSRN-SRFECWNCGKIGHL 222
           +D+G  S SGS LN++ R     RN+N+G  N   S  NRS+SR+  + +CWNCGK GH 
Sbjct: 143 RDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHF 202

Query: 223 NRNCKAPKKNDGNEAGANVAEQIHDALILAVESAHD 239
            R CK+PKK + +++   V E++ DAL+LAV+S  D
Sbjct: 203 KRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLD 238

[Close]

BLAST of Moc05g08650 vs. NCBI nr
Match: RVX08463.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 170.2 bits (430), Expect = 2.1e-38
Identity = 100/216 (46.30%), Postives = 139/216 (64.35%), Query Frame = 0


Query: 43  KLTVLDYLHSKELELPLEG-KPDDMREKEWKKLDMKVLGTTRLTLTKNVQSSVTKETTTM 102
           ++ + DYL+ ++L LPL G KP+ M+ +EW   D +VLG  RLTL+++V  +V KE TT 
Sbjct: 23  RMQIEDYLYGRKLHLPLLGTKPESMKAEEWVLFDRQVLGVIRLTLSRSVAHNVVKEKTTA 82

Query: 103 GFINALANI-------------SLPVSWEPMRAAISNSCGKEKLKFEDVRDAALAEKIRR 162
             + AL+ I             SLP SWE MR A+SNS GKEKLK+ D+RD  LAE+IRR
Sbjct: 83  DLMKALSEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRR 142

Query: 163 KDSGIASTSGSVLNVDRR-----RNNNRGYGNRGKSKNNRSRSRN-SRFECWNCGKIGHL 222
           +D+G  S SGS LN++ R     RN+N+G  N   S  N S+SR+  + +CWNCGK GH 
Sbjct: 143 RDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNISKSRSGQQVQCWNCGKTGHF 202

Query: 223 NRNCKAPKKNDGNEAGANVAEQIHDALILAVESAHD 239
            R CK+PKK + +++   V E++ DAL+LAV+S  D
Sbjct: 203 KRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLD 238

[Close]

BLAST of Moc05g08650 vs. NCBI nr
Match: RVW87710.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 165.2 bits (417), Expect = 6.7e-37
Identity = 101/234 (43.16%), Postives = 140/234 (59.83%), Query Frame = 0


Query: 43  KLTVLDYLHSKELELPLEG-KPDDMREKEWKKLDMKVLGTTRLTLTKNVQSSVTKETTTM 102
           ++ + DYL+ ++L LPL G KP+ M+ +EW  LD +VLG  RLTL+++V  +V KE TT 
Sbjct: 23  RMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTA 82

Query: 103 GFINALA-------------------------------NISLPVSWEPMRAAISNSCGKE 162
             + AL+                                 SLP SWE MR A+SNS GKE
Sbjct: 83  DLMKALSVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKE 142

Query: 163 KLKFEDVRDAALAEKIRRKDSGIASTSGSVLNVDRR-----RNNNRGYGNRGKSKNNRSR 222
           KLK+ D+RD  LAE+IRR+D+G  S SGS LN++ R     RN+N+G  N   S  NRS+
Sbjct: 143 KLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSK 202

Query: 223 SRN-SRFECWNCGKIGHLNRNCKAPKKNDGNEAGANVAEQIHDALILAVESAHD 239
           SR+  + +CWNCGK GH  R CK+PKK + +++   V E++ DAL+LAV+S  D
Sbjct: 203 SRSGQQVQCWNCGKTGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLD 256

[Close]

BLAST of Moc05g08650 vs. NCBI nr
Match: RVW42863.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-35
Identity = 100/237 (42.19%), Postives = 141/237 (59.49%), Query Frame = 0


Query: 43  KLTVLDYLHSKELELPLEG-KPDDMREKEWKKLDMKVLGTTRLTLTKNVQSSVTKETTTM 102
           ++ + DYL+ ++L LPL G KP+ M+ +EW  LD +VLG  RLTL+++V  +V KE TT 
Sbjct: 23  RMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTA 82

Query: 103 GFI-------------------NALANI---------------SLPVSWEPMRAAISNSC 162
             +                   N L+++               SLP SWE MR A+SNS 
Sbjct: 83  NLMKMAENASVAQHLNEFNTITNQLSSVEIDFDDEICALIVLASLPNSWEAMRMAVSNST 142

Query: 163 GKEKLKFEDVRDAALAEKIRRKDSGIASTSGSVLNVDRR-----RNNNRGYGNRGKSKNN 222
           GKEKLK+ D+RD  L E+IRR+D+G  S SGS LN++ R     RN+N+G  N   S  N
Sbjct: 143 GKEKLKYNDIRDLILDEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRN 202

Query: 223 RSRSRN-SRFECWNCGKIGHLNRNCKAPKKNDGNEAGANVAEQIHDALILAVESAHD 239
           RS+SR+  + +CWNCGK GH  R CK+PKK + +++   V E++ DAL+LAV+S  D
Sbjct: 203 RSKSRSGQQVQCWNCGKTGHFKRQCKSPKKKNEDDSANVVTEEVQDALLLAVDSPLD 259

[Close]

BLAST of Moc05g08650 vs. ExPASy TrEMBL
Match: A0A6J1DF43 (uncharacterized protein LOC111020469 OS=Momordica charantia OX=3673 GN=LOC111020469 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 4.5e-79
Identity = 175/265 (66.04%), Postives = 183/265 (69.06%), Query Frame = 0


Query: 34  KRNGWSKEGKLTVLDYLHSKELELPLEGKPDDMREKEWKKLDMKVLGTTRLTLTKNVQSS 93
           K+        + VLDYLHSKELE PLEGKPDDM EKEWKKLD KVLGT RLTLTKNVQSS
Sbjct: 565 KKKSNDNHPNIVVLDYLHSKELEFPLEGKPDDMGEKEWKKLDRKVLGTIRLTLTKNVQSS 624

Query: 94  VTKETTTMGFINALANI------------------------------------------- 153
           V K TTTMG +NALAN+                                           
Sbjct: 625 VAK-TTTMGLMNALANMYEKASVNNKVYLATKFFNLKMAESTPITAHLNEFDVLINKLVA 684

Query: 154 ----------------SLPVSWEPMRAAISNSCGKEKLKFEDVRDAALAEKIRRKDSGIA 213
                           SLP SWEPMRAAISNSC KEKLKFEDVRDAALAE+IRRKDSGIA
Sbjct: 685 VDLEFSHEVYAILLLRSLPDSWEPMRAAISNSCEKEKLKFEDVRDAALAEEIRRKDSGIA 744

Query: 214 STSGSVLNVDRRRNNNRGYGNRGKSKNNRSRSRNSRFECWNCGKIGHLNRNCKAPKKNDG 240
            TSGSVLNVDR RNNNRGYGNRGKSKNNRSRSRNSRFECWNCGKIGHL  NCKAPKKN+G
Sbjct: 745 PTSGSVLNVDRGRNNNRGYGNRGKSKNNRSRSRNSRFECWNCGKIGHLKSNCKAPKKNEG 804

[Close]

BLAST of Moc05g08650 vs. ExPASy TrEMBL
Match: A5BPB3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034935 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.2e-40
Identity = 102/216 (47.22%), Postives = 141/216 (65.28%), Query Frame = 0


Query: 43  KLTVLDYLHSKELELPLEG-KPDDMREKEWKKLDMKVLGTTRLTLTKNVQSSVTKETTTM 102
           ++ + DYL+ ++L LPL G KP+ M+ +EW  LD +VLG  RLTL+++V  +V KE TT 
Sbjct: 23  RMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTA 82

Query: 103 GFINALANI-------------SLPVSWEPMRAAISNSCGKEKLKFEDVRDAALAEKIRR 162
             + AL+ I             SLP SWE MR A+SNS GKEKLK+ D+RD  LAE+IRR
Sbjct: 83  DLMKALSEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRR 142

Query: 163 KDSGIASTSGSVLNVDRR-----RNNNRGYGNRGKSKNNRSRSRN-SRFECWNCGKIGHL 222
           +D+G  S SGS LN++ R     RN+N+G  N   S  NRS+SR+  + +CWNCGK GH 
Sbjct: 143 RDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHF 202

Query: 223 NRNCKAPKKNDGNEAGANVAEQIHDALILAVESAHD 239
            R CK+PKK + +++   V E++ DAL+LAV+S  D
Sbjct: 203 KRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLD 238

[Close]

BLAST of Moc05g08650 vs. ExPASy TrEMBL
Match: A0A438JHN2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3131 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.0e-38
Identity = 100/216 (46.30%), Postives = 139/216 (64.35%), Query Frame = 0


Query: 43  KLTVLDYLHSKELELPLEG-KPDDMREKEWKKLDMKVLGTTRLTLTKNVQSSVTKETTTM 102
           ++ + DYL+ ++L LPL G KP+ M+ +EW   D +VLG  RLTL+++V  +V KE TT 
Sbjct: 23  RMQIEDYLYGRKLHLPLLGTKPESMKAEEWVLFDRQVLGVIRLTLSRSVAHNVVKEKTTA 82

Query: 103 GFINALANI-------------SLPVSWEPMRAAISNSCGKEKLKFEDVRDAALAEKIRR 162
             + AL+ I             SLP SWE MR A+SNS GKEKLK+ D+RD  LAE+IRR
Sbjct: 83  DLMKALSEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRR 142

Query: 163 KDSGIASTSGSVLNVDRR-----RNNNRGYGNRGKSKNNRSRSRN-SRFECWNCGKIGHL 222
           +D+G  S SGS LN++ R     RN+N+G  N   S  N S+SR+  + +CWNCGK GH 
Sbjct: 143 RDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNISKSRSGQQVQCWNCGKTGHF 202

Query: 223 NRNCKAPKKNDGNEAGANVAEQIHDALILAVESAHD 239
            R CK+PKK + +++   V E++ DAL+LAV+S  D
Sbjct: 203 KRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLD 238

[Close]

BLAST of Moc05g08650 vs. ExPASy TrEMBL
Match: A0A438HTJ3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3129 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.3e-37
Identity = 101/234 (43.16%), Postives = 140/234 (59.83%), Query Frame = 0


Query: 43  KLTVLDYLHSKELELPLEG-KPDDMREKEWKKLDMKVLGTTRLTLTKNVQSSVTKETTTM 102
           ++ + DYL+ ++L LPL G KP+ M+ +EW  LD +VLG  RLTL+++V  +V KE TT 
Sbjct: 23  RMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTA 82

Query: 103 GFINALA-------------------------------NISLPVSWEPMRAAISNSCGKE 162
             + AL+                                 SLP SWE MR A+SNS GKE
Sbjct: 83  DLMKALSVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKE 142

Query: 163 KLKFEDVRDAALAEKIRRKDSGIASTSGSVLNVDRR-----RNNNRGYGNRGKSKNNRSR 222
           KLK+ D+RD  LAE+IRR+D+G  S SGS LN++ R     RN+N+G  N   S  NRS+
Sbjct: 143 KLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSK 202

Query: 223 SRN-SRFECWNCGKIGHLNRNCKAPKKNDGNEAGANVAEQIHDALILAVESAHD 239
           SR+  + +CWNCGK GH  R CK+PKK + +++   V E++ DAL+LAV+S  D
Sbjct: 203 SRSGQQVQCWNCGKTGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLD 256

[Close]

BLAST of Moc05g08650 vs. ExPASy TrEMBL
Match: A0A438E5A8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2930 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.2e-36
Identity = 100/237 (42.19%), Postives = 141/237 (59.49%), Query Frame = 0


Query: 43  KLTVLDYLHSKELELPLEG-KPDDMREKEWKKLDMKVLGTTRLTLTKNVQSSVTKETTTM 102
           ++ + DYL+ ++L LPL G KP+ M+ +EW  LD +VLG  RLTL+++V  +V KE TT 
Sbjct: 23  RMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTA 82

Query: 103 GFI-------------------NALANI---------------SLPVSWEPMRAAISNSC 162
             +                   N L+++               SLP SWE MR A+SNS 
Sbjct: 83  NLMKMAENASVAQHLNEFNTITNQLSSVEIDFDDEICALIVLASLPNSWEAMRMAVSNST 142

Query: 163 GKEKLKFEDVRDAALAEKIRRKDSGIASTSGSVLNVDRR-----RNNNRGYGNRGKSKNN 222
           GKEKLK+ D+RD  L E+IRR+D+G  S SGS LN++ R     RN+N+G  N   S  N
Sbjct: 143 GKEKLKYNDIRDLILDEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRN 202

Query: 223 RSRSRN-SRFECWNCGKIGHLNRNCKAPKKNDGNEAGANVAEQIHDALILAVESAHD 239
           RS+SR+  + +CWNCGK GH  R CK+PKK + +++   V E++ DAL+LAV+S  D
Sbjct: 203 RSKSRSGQQVQCWNCGKTGHFKRQCKSPKKKNEDDSANVVTEEVQDALLLAVDSPLD 259

[Close]

BLAST of Moc05g08650 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 2.5e-05
Identity = 24/68 (35.29%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 43  KLTVLDYLHSKELELPLEGKPDDMREKEWKKLDMKVLGTTRLTLTKNVQSSVTKETTTMG 102
           ++ + DYL+ K+L  PL  K + M + +W  L  +VL   RLT++KN+  +V KE +  G
Sbjct: 18  RMKIEDYLYGKKLHQPLGKKVETMSQDDWNILYRQVLDVIRLTISKNIAHNVAKEKSPDG 77

Query: 103 FINALANI 111
            +  L++I
Sbjct: 78  LMKVLSDI 85

The following BLAST results are available for this feature:

BLAST of Moc05g08650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152845.1	9.3e-79	66.04	uncharacterized protein LOC111020469 [Momordica charantia]	[more]
CAN65867.1	6.5e-40	47.22	hypothetical protein VITISV_034935 [Vitis vinifera]	[more]
RVX08463.1	2.1e-38	46.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW87710.1	6.7e-37	43.16	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW42863.1	1.3e-35	42.19	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Moc05g08650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g08650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DF43	4.5e-79	66.04	uncharacterized protein LOC111020469 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A5BPB3	3.2e-40	47.22	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034935 PE=4 SV=1	[more]
A0A438JHN2	1.0e-38	46.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438HTJ3	3.3e-37	43.16	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438E5A8	6.2e-36	42.19	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Moc05g08650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29785.1	2.5e-05	35.29	unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 192..208 e-value: 0.0031 score: 26.7
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 193..207 score: 10.279065
None	No IPR available	GENE3D	4.10.60.10		coord: 179..222 e-value: 1.1E-5 score: 27.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 111..222
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 43..109
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 111..222
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 43..109
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 189..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g08650.1	Moc05g08650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding