Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTTCACTCTCACGCCACCTGTCCACTCTGTCGCTCGCCGGTCGAGGCCGTCCCGGAGATTCCTGTGGTGGTGGCGATTTCCGCCGCTGAATCTGAGAGCATCGAACCGGGTTCGAGTTCCTCCGGGTTCTGCGCCGAGTGCGACCGCGCGGACCGGATGGCTCTGTCTCATCCTTCGTCCTCCGCCGGGTCGAGGTCGTTTAGGGCACGGCGGAAGCCGGCGGAAGTGTCGATTGAGATCCCGAGGCGGGGCGACGGCGAGTTCGCTGCGGCGTCGCCGTCGACGACTCCGTTGACTCCGTCTTTCAAATCGCCGATTAGTCGCGTGATGTCTCTGTCGTTCAAGAGGATCATCGGCCGGGACAGGCGGGGCGGTGCGTCCCCGTCCGGCAATGCTGGGGGCTGCAGCTCCGTCGCCGGCGCCGAATCGGATATCGAACGGGGAAAGGATTGCGCTGTGTGA
mRNA sequence
ATGTGGTTTCACTCTCACGCCACCTGTCCACTCTGTCGCTCGCCGGTCGAGGCCGTCCCGGAGATTCCTGTGGTGGTGGCGATTTCCGCCGCTGAATCTGAGAGCATCGAACCGGGTTCGAGTTCCTCCGGGTTCTGCGCCGAGTGCGACCGCGCGGACCGGATGGCTCTGTCTCATCCTTCGTCCTCCGCCGGGTCGAGGTCGTTTAGGGCACGGCGGAAGCCGGCGGAAGTGTCGATTGAGATCCCGAGGCGGGGCGACGGCGAGTTCGCTGCGGCGTCGCCGTCGACGACTCCGTTGACTCCGTCTTTCAAATCGCCGATTAGTCGCGTGATGTCTCTGTCGTTCAAGAGGATCATCGGCCGGGACAGGCGGGGCGGTGCGTCCCCGTCCGGCAATGCTGGGGGCTGCAGCTCCGTCGCCGGCGCCGAATCGGATATCGAACGGGGAAAGGATTGCGCTGTGTGA
Coding sequence (CDS)
ATGTGGTTTCACTCTCACGCCACCTGTCCACTCTGTCGCTCGCCGGTCGAGGCCGTCCCGGAGATTCCTGTGGTGGTGGCGATTTCCGCCGCTGAATCTGAGAGCATCGAACCGGGTTCGAGTTCCTCCGGGTTCTGCGCCGAGTGCGACCGCGCGGACCGGATGGCTCTGTCTCATCCTTCGTCCTCCGCCGGGTCGAGGTCGTTTAGGGCACGGCGGAAGCCGGCGGAAGTGTCGATTGAGATCCCGAGGCGGGGCGACGGCGAGTTCGCTGCGGCGTCGCCGTCGACGACTCCGTTGACTCCGTCTTTCAAATCGCCGATTAGTCGCGTGATGTCTCTGTCGTTCAAGAGGATCATCGGCCGGGACAGGCGGGGCGGTGCGTCCCCGTCCGGCAATGCTGGGGGCTGCAGCTCCGTCGCCGGCGCCGAATCGGATATCGAACGGGGAAAGGATTGCGCTGTGTGA
Protein sequence
MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHPSSSAGSRSFRARRKPAEVSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFKRIIGRDRRGGASPSGNAGGCSSVAGAESDIERGKDCAV
Homology
BLAST of Moc05g06980 vs. NCBI nr
Match:
XP_022137798.1 (RING-H2 finger protein ATL2 [Momordica charantia])
HSP 1 Score: 299.7 bits (766), Expect = 1.5e-77
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
Query: 1 MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP 60
MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP
Sbjct: 142 MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP 201
Query: 61 SSSAGSRSFRARRKPAEVSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFKRII 120
SSSAGSRSFRARRKPAEVSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFKRII
Sbjct: 202 SSSAGSRSFRARRKPAEVSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFKRII 261
Query: 121 GRDRRGGASPSGNAGGCSSVAGAESDIERGKDCAV 156
GRDRRGGASPSGNAGGCSSVAGAESDIERGKDCAV
Sbjct: 262 GRDRRGGASPSGNAGGCSSVAGAESDIERGKDCAV 296
BLAST of Moc05g06980 vs. NCBI nr
Match:
KAG7018598.1 (RING-H2 finger protein ATL2, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 193.4 bits (490), Expect = 1.5e-45
Identity = 110/158 (69.62%), Postives = 118/158 (74.68%), Query Frame = 0
Query: 1 MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP 60
MWFHSH TCPLCR+PVE PE PV VA+S E EPG SSS C ECD +DRM P
Sbjct: 144 MWFHSHTTCPLCRTPVERPPETPVEVAVSIGEPAITEPGPSSSDVCVECDISDRM----P 203
Query: 61 SSSAGSRSFRARRKPAE---VSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFK 120
SSS GSRSFRARRKP E VSIEIP R DGEFAA S +P TPSFKSPISRVMSLSFK
Sbjct: 204 SSSTGSRSFRARRKPGELAGVSIEIPTRRDGEFAA---SLSPTTPSFKSPISRVMSLSFK 263
Query: 121 RIIGRDRRGGASPSGNAGGCSSVAGAESDIERGKDCAV 156
IIGR+RRGG SPSG + GCSS AG E DIE+GK+ AV
Sbjct: 264 MIIGRERRGGVSPSGTSVGCSSGAGGELDIEKGKENAV 294
BLAST of Moc05g06980 vs. NCBI nr
Match:
XP_022979893.1 (RING-H2 finger protein ATL2-like [Cucurbita maxima])
HSP 1 Score: 192.2 bits (487), Expect = 3.3e-45
Identity = 110/158 (69.62%), Postives = 118/158 (74.68%), Query Frame = 0
Query: 1 MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP 60
MWFHSH TCPLCR+PVE PE PV VA+S E EPG SSS C ECDR+DRMA
Sbjct: 142 MWFHSHTTCPLCRTPVERPPETPVEVAVSIGEPAITEPGPSSSDLCVECDRSDRMA---- 201
Query: 61 SSSAGSRSFRARRKPAE---VSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFK 120
SSS GSRSFRARRKP E VSIEIP R DGEFAA S +P TPSFKSPISRVMSLSFK
Sbjct: 202 SSSTGSRSFRARRKPGELAGVSIEIPTRRDGEFAA---SLSPTTPSFKSPISRVMSLSFK 261
Query: 121 RIIGRDRRGGASPSGNAGGCSSVAGAESDIERGKDCAV 156
IIGR+RRGG SPSG + CSS AG E DIE+GK+ AV
Sbjct: 262 MIIGRERRGGVSPSGTSVECSSGAGGELDIEKGKENAV 292
BLAST of Moc05g06980 vs. NCBI nr
Match:
XP_022956344.1 (RING-H2 finger protein ATL2 [Cucurbita moschata])
HSP 1 Score: 192.2 bits (487), Expect = 3.3e-45
Identity = 110/158 (69.62%), Postives = 118/158 (74.68%), Query Frame = 0
Query: 1 MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP 60
MWFHSH TCPLCR+PVE PE PV VA+S E EPG SSS C ECD +DRMA
Sbjct: 144 MWFHSHTTCPLCRTPVERPPETPVEVAVSIGEPAITEPGPSSSDLCVECDISDRMA---- 203
Query: 61 SSSAGSRSFRARRKPAE---VSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFK 120
SSS GSRSFRARRKP E VSIEIP R DGEFAA S +P TPSFKSPISRVMSLSFK
Sbjct: 204 SSSTGSRSFRARRKPGELAGVSIEIPTRRDGEFAA---SLSPTTPSFKSPISRVMSLSFK 263
Query: 121 RIIGRDRRGGASPSGNAGGCSSVAGAESDIERGKDCAV 156
IIGR+RRGG SPSG + GCSS AG E DIE+GK+ AV
Sbjct: 264 MIIGRERRGGVSPSGTSVGCSSGAGGELDIEKGKENAV 294
BLAST of Moc05g06980 vs. NCBI nr
Match:
KAG6582202.1 (RING-H2 finger protein ATL2, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 192.2 bits (487), Expect = 3.3e-45
Identity = 110/158 (69.62%), Postives = 118/158 (74.68%), Query Frame = 0
Query: 1 MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP 60
MWFHSH TCPLCR+PVE PE PV VA+S E EPG SSS C ECD +DRMA
Sbjct: 140 MWFHSHTTCPLCRTPVERPPETPVEVAVSIGEPAITEPGPSSSDLCVECDISDRMA---- 199
Query: 61 SSSAGSRSFRARRKPAE---VSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFK 120
SSS GSRSFRARRKP E VSIEIP R DGEFAA S +P TPSFKSPISRVMSLSFK
Sbjct: 200 SSSTGSRSFRARRKPGELAGVSIEIPTRRDGEFAA---SLSPTTPSFKSPISRVMSLSFK 259
Query: 121 RIIGRDRRGGASPSGNAGGCSSVAGAESDIERGKDCAV 156
IIGR+RRGG SPSG + GCSS AG E DIE+GK+ AV
Sbjct: 260 MIIGRERRGGVSPSGTSVGCSSGAGGELDIEKGKENAV 290
BLAST of Moc05g06980 vs. ExPASy Swiss-Prot
Match:
Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)
HSP 1 Score: 78.6 bits (192), Expect = 7.1e-14
Identity = 70/167 (41.92%), Postives = 88/167 (52.69%), Query Frame = 0
Query: 1 MWFHSHATCPLCRSPVE---------AVPEIPVVVAISAAESESIEPGSSSSGFCAECDR 60
MWFHSH+TCPLCRS VE A E VV+A+ + IEP SSSSG E
Sbjct: 149 MWFHSHSTCPLCRSLVESLAGIESTAAAREREVVIAVDSDPVLVIEP-SSSSGLTDE--- 208
Query: 61 ADRMALSHPSSSAGSRSFR--ARRKPAEVSIEIPRRGDGEFA-AASPSTTPLTPSFKSPI 120
P S S+ R + RKPA +IE+PRR EF + +P + SF+SP+
Sbjct: 209 --------PHGSGSSQMLREDSGRKPA--AIEVPRRTFSEFEDELTRRDSPASQSFRSPM 268
Query: 121 SRVMSLSFKRIIGRDRRGGASPSGNAGGCS-----SVAGAESDIERG 151
SR+ LSF R++ RDRR +SP A S + ESDIERG
Sbjct: 269 SRM--LSFTRMLSRDRRSASSPIAGAPPLSPTLSCRIQMTESDIERG 299
BLAST of Moc05g06980 vs. ExPASy TrEMBL
Match:
A0A6J1CBD8 (RING-H2 finger protein ATL2 OS=Momordica charantia OX=3673 GN=LOC111009146 PE=4 SV=1)
HSP 1 Score: 299.7 bits (766), Expect = 7.2e-78
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
Query: 1 MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP 60
MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP
Sbjct: 142 MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP 201
Query: 61 SSSAGSRSFRARRKPAEVSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFKRII 120
SSSAGSRSFRARRKPAEVSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFKRII
Sbjct: 202 SSSAGSRSFRARRKPAEVSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFKRII 261
Query: 121 GRDRRGGASPSGNAGGCSSVAGAESDIERGKDCAV 156
GRDRRGGASPSGNAGGCSSVAGAESDIERGKDCAV
Sbjct: 262 GRDRRGGASPSGNAGGCSSVAGAESDIERGKDCAV 296
BLAST of Moc05g06980 vs. ExPASy TrEMBL
Match:
A0A6J1IXL9 (RING-H2 finger protein ATL2-like OS=Cucurbita maxima OX=3661 GN=LOC111479448 PE=4 SV=1)
HSP 1 Score: 192.2 bits (487), Expect = 1.6e-45
Identity = 110/158 (69.62%), Postives = 118/158 (74.68%), Query Frame = 0
Query: 1 MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP 60
MWFHSH TCPLCR+PVE PE PV VA+S E EPG SSS C ECDR+DRMA
Sbjct: 142 MWFHSHTTCPLCRTPVERPPETPVEVAVSIGEPAITEPGPSSSDLCVECDRSDRMA---- 201
Query: 61 SSSAGSRSFRARRKPAE---VSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFK 120
SSS GSRSFRARRKP E VSIEIP R DGEFAA S +P TPSFKSPISRVMSLSFK
Sbjct: 202 SSSTGSRSFRARRKPGELAGVSIEIPTRRDGEFAA---SLSPTTPSFKSPISRVMSLSFK 261
Query: 121 RIIGRDRRGGASPSGNAGGCSSVAGAESDIERGKDCAV 156
IIGR+RRGG SPSG + CSS AG E DIE+GK+ AV
Sbjct: 262 MIIGRERRGGVSPSGTSVECSSGAGGELDIEKGKENAV 292
BLAST of Moc05g06980 vs. ExPASy TrEMBL
Match:
A0A6J1GYS2 (RING-H2 finger protein ATL2 OS=Cucurbita moschata OX=3662 GN=LOC111458072 PE=4 SV=1)
HSP 1 Score: 192.2 bits (487), Expect = 1.6e-45
Identity = 110/158 (69.62%), Postives = 118/158 (74.68%), Query Frame = 0
Query: 1 MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP 60
MWFHSH TCPLCR+PVE PE PV VA+S E EPG SSS C ECD +DRMA
Sbjct: 144 MWFHSHTTCPLCRTPVERPPETPVEVAVSIGEPAITEPGPSSSDLCVECDISDRMA---- 203
Query: 61 SSSAGSRSFRARRKPAE---VSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFK 120
SSS GSRSFRARRKP E VSIEIP R DGEFAA S +P TPSFKSPISRVMSLSFK
Sbjct: 204 SSSTGSRSFRARRKPGELAGVSIEIPTRRDGEFAA---SLSPTTPSFKSPISRVMSLSFK 263
Query: 121 RIIGRDRRGGASPSGNAGGCSSVAGAESDIERGKDCAV 156
IIGR+RRGG SPSG + GCSS AG E DIE+GK+ AV
Sbjct: 264 MIIGRERRGGVSPSGTSVGCSSGAGGELDIEKGKENAV 294
BLAST of Moc05g06980 vs. ExPASy TrEMBL
Match:
A0A5D3CWE4 (RING-H2 finger protein ATL2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001210 PE=4 SV=1)
HSP 1 Score: 191.8 bits (486), Expect = 2.1e-45
Identity = 108/155 (69.68%), Postives = 117/155 (75.48%), Query Frame = 0
Query: 1 MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP 60
MWFHSHATCPLCRSPVE E P V IS E E GSSSSGFCAECDR DRM P
Sbjct: 143 MWFHSHATCPLCRSPVEMATEAPAEVEISMEEPAIAESGSSSSGFCAECDRPDRM----P 202
Query: 61 SSSAGSRSFRARRKPAE---VSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFK 120
SS GSRSFRARRKP+E VSIEIP R +GEFA+ S +P TPSFKSPISRVMSLSFK
Sbjct: 203 PSSTGSRSFRARRKPSEMGGVSIEIPTRREGEFAS---SLSPTTPSFKSPISRVMSLSFK 262
Query: 121 RIIGRDRRGGASPSGNAGGCSSVAGAESDIERGKD 153
IIGR+RRGG SP+GN GCSS +G E DIE+GK+
Sbjct: 263 MIIGRERRGGTSPTGNGVGCSSGSGVELDIEKGKE 290
BLAST of Moc05g06980 vs. ExPASy TrEMBL
Match:
A0A1S3AY49 (RING-H2 finger protein ATL2 OS=Cucumis melo OX=3656 GN=LOC103483864 PE=4 SV=1)
HSP 1 Score: 191.8 bits (486), Expect = 2.1e-45
Identity = 108/155 (69.68%), Postives = 117/155 (75.48%), Query Frame = 0
Query: 1 MWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHP 60
MWFHSHATCPLCRSPVE E P V IS E E GSSSSGFCAECDR DRM P
Sbjct: 143 MWFHSHATCPLCRSPVEMATEAPAEVEISMEEPAIAESGSSSSGFCAECDRPDRM----P 202
Query: 61 SSSAGSRSFRARRKPAE---VSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFK 120
SS GSRSFRARRKP+E VSIEIP R +GEFA+ S +P TPSFKSPISRVMSLSFK
Sbjct: 203 PSSTGSRSFRARRKPSEMGGVSIEIPTRREGEFAS---SLSPTTPSFKSPISRVMSLSFK 262
Query: 121 RIIGRDRRGGASPSGNAGGCSSVAGAESDIERGKD 153
IIGR+RRGG SP+GN GCSS +G E DIE+GK+
Sbjct: 263 MIIGRERRGGTSPTGNGVGCSSGSGVELDIEKGKE 290
BLAST of Moc05g06980 vs. TAIR 10
Match:
AT3G16720.1 (TOXICOS EN LEVADURA 2 )
HSP 1 Score: 78.6 bits (192), Expect = 5.0e-15
Identity = 70/167 (41.92%), Postives = 88/167 (52.69%), Query Frame = 0
Query: 1 MWFHSHATCPLCRSPVE---------AVPEIPVVVAISAAESESIEPGSSSSGFCAECDR 60
MWFHSH+TCPLCRS VE A E VV+A+ + IEP SSSSG E
Sbjct: 149 MWFHSHSTCPLCRSLVESLAGIESTAAAREREVVIAVDSDPVLVIEP-SSSSGLTDE--- 208
Query: 61 ADRMALSHPSSSAGSRSFR--ARRKPAEVSIEIPRRGDGEFA-AASPSTTPLTPSFKSPI 120
P S S+ R + RKPA +IE+PRR EF + +P + SF+SP+
Sbjct: 209 --------PHGSGSSQMLREDSGRKPA--AIEVPRRTFSEFEDELTRRDSPASQSFRSPM 268
Query: 121 SRVMSLSFKRIIGRDRRGGASPSGNAGGCS-----SVAGAESDIERG 151
SR+ LSF R++ RDRR +SP A S + ESDIERG
Sbjct: 269 SRM--LSFTRMLSRDRRSASSPIAGAPPLSPTLSCRIQMTESDIERG 299
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022137798.1 | 1.5e-77 | 100.00 | RING-H2 finger protein ATL2 [Momordica charantia] | [more] |
KAG7018598.1 | 1.5e-45 | 69.62 | RING-H2 finger protein ATL2, partial [Cucurbita argyrosperma subsp. argyrosperma... | [more] |
XP_022979893.1 | 3.3e-45 | 69.62 | RING-H2 finger protein ATL2-like [Cucurbita maxima] | [more] |
XP_022956344.1 | 3.3e-45 | 69.62 | RING-H2 finger protein ATL2 [Cucurbita moschata] | [more] |
KAG6582202.1 | 3.3e-45 | 69.62 | RING-H2 finger protein ATL2, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
Match Name | E-value | Identity | Description | |
Q8L9T5 | 7.1e-14 | 41.92 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1CBD8 | 7.2e-78 | 100.00 | RING-H2 finger protein ATL2 OS=Momordica charantia OX=3673 GN=LOC111009146 PE=4 ... | [more] |
A0A6J1IXL9 | 1.6e-45 | 69.62 | RING-H2 finger protein ATL2-like OS=Cucurbita maxima OX=3661 GN=LOC111479448 PE=... | [more] |
A0A6J1GYS2 | 1.6e-45 | 69.62 | RING-H2 finger protein ATL2 OS=Cucurbita moschata OX=3662 GN=LOC111458072 PE=4 S... | [more] |
A0A5D3CWE4 | 2.1e-45 | 69.68 | RING-H2 finger protein ATL2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A1S3AY49 | 2.1e-45 | 69.68 | RING-H2 finger protein ATL2 OS=Cucumis melo OX=3656 GN=LOC103483864 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT3G16720.1 | 5.0e-15 | 41.92 | TOXICOS EN LEVADURA 2 | [more] |