Moc05g06860 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g06860
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr5: 4833817 .. 4834338 (+)
RNA-Seq ExpressionMoc05g06860
SyntenyMoc05g06860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTAAAACGAAAAGCGATGAAGCGGCAGAAGAGACAGATCTATTTTACACATTGTGGATTTCAGTCGCCGGAGTCATCGTCGCCGCCGAAGATCGAAATGCGATTGTAGAGGAGGAAGAGAATGAGGAGGAGGAAGAGAGCGACGCCGACGGGCGATCCAGTGACGCGGTGGATGGAATCGGGCTCGCCGGTGGAGAAGATGGCGGAGACGAAGGAGCCGCGGTCGGAGGAGAGGAACTGGATGGCGAGGAGGAGGATGACGGGAAGGAGGAGGAGGCCGAAGGGGCTGAGGAGGTCGGAGATGGCTTCGGTGACGGCCTCGCCTTGGTCGCCGAAGACGAACGGAACGACGATCACGACGGCGACGACGACTGCCAGCAGAATGCCGTGGGGAGCGCCGCCTTGCCGTTCTTCTATCATTTTTCGGCCTCTGCACTGCACGTTTTTCAACCTCCTCCGACGCTCTTTTTGAAAGCAGAGGAGAGAGAAAGAGAGAGAGAGGTTAAAAAAATGTGA

mRNA sequence

ATGGAAGCTAAAACGAAAAGCGATGAAGCGGCAGAAGAGACAGATCTATTTTACACATTGTGGATTTCAGTCGCCGGAGTCATCGTCGCCGCCGAAGATCGAAATGCGATTGTAGAGGAGGAAGAGAATGAGGAGGAGGAAGAGAGCGACGCCGACGGGCGATCCAGTGACGCGGTGGATGGAATCGGGCTCGCCGGTGGAGAAGATGGCGGAGACGAAGGAGCCGCGGTCGGAGGAGAGGAACTGGATGGCGAGGAGGAGGATGACGGGAAGGAGGAGGAGGCCGAAGGGGCTGAGGAGGTCGGAGATGGCTTCGGTGACGGCCTCGCCTTGGTCGCCGAAGACGAACGGAACGACGATCACGACGGCGACGACGACTGCCAGCAGAATGCCGTGGGGAGCGCCGCCTTGCCGTTCTTCTATCATTTTTCGGCCTCTGCACTGCACGTTTTTCAACCTCCTCCGACGCTCTTTTTGAAAGCAGAGGAGAGAGAAAGAGAGAGAGAGGTTAAAAAAATGTGA

Coding sequence (CDS)

ATGGAAGCTAAAACGAAAAGCGATGAAGCGGCAGAAGAGACAGATCTATTTTACACATTGTGGATTTCAGTCGCCGGAGTCATCGTCGCCGCCGAAGATCGAAATGCGATTGTAGAGGAGGAAGAGAATGAGGAGGAGGAAGAGAGCGACGCCGACGGGCGATCCAGTGACGCGGTGGATGGAATCGGGCTCGCCGGTGGAGAAGATGGCGGAGACGAAGGAGCCGCGGTCGGAGGAGAGGAACTGGATGGCGAGGAGGAGGATGACGGGAAGGAGGAGGAGGCCGAAGGGGCTGAGGAGGTCGGAGATGGCTTCGGTGACGGCCTCGCCTTGGTCGCCGAAGACGAACGGAACGACGATCACGACGGCGACGACGACTGCCAGCAGAATGCCGTGGGGAGCGCCGCCTTGCCGTTCTTCTATCATTTTTCGGCCTCTGCACTGCACGTTTTTCAACCTCCTCCGACGCTCTTTTTGAAAGCAGAGGAGAGAGAAAGAGAGAGAGAGGTTAAAAAAATGTGA

Protein sequence

MEAKTKSDEAAEETDLFYTLWISVAGVIVAAEDRNAIVEEEENEEEEESDADGRSSDAVDGIGLAGGEDGGDEGAAVGGEELDGEEEDDGKEEEAEGAEEVGDGFGDGLALVAEDERNDDHDGDDDCQQNAVGSAALPFFYHFSASALHVFQPPPTLFLKAEEREREREVKKM
Homology
BLAST of Moc05g06860 vs. NCBI nr
Match: KAF7834509.1 (condensin-2 complex subunit D3 [Senna tora])

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-33
Identity = 88/126 (69.84%), Postives = 107/126 (84.92%), Query Frame = 0

Query: 23   SVAGVIVAAEDRNAIVEEEENEEEEESDADGRSSDAVDGIGLAGGEDGGDEGAAVGGEEL 82
            SVAG+I+AAED +A+V+E+ENEEEEE DADGRS+D VDGIGLAGGE+GGDEGAA+GGE+L
Sbjct: 1335 SVAGIIIAAEDGDAVVQEDENEEEEERDADGRSADPVDGIGLAGGENGGDEGAAIGGEKL 1394

Query: 83   DGEEEDDGKEEEAEGAEEVGDGFGDGLALVAEDERNDDHDGDDDCQQNAVG------SAA 142
            DGEEE+DG++EE E AEE GDGFGDG AL+AE ERN  H+G   CQ++AVG      +AA
Sbjct: 1395 DGEEEEDGEKEETERAEEFGDGFGDGFALIAEKERNHYHNGYHYCQEDAVGRTTAAAAAA 1454

BLAST of Moc05g06860 vs. NCBI nr
Match: KAF5452335.1 (hypothetical protein F2P56_027343 [Juglans regia])

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-13
Identity = 54/96 (56.25%), Postives = 76/96 (79.17%), Query Frame = 0

Query: 26  GVIVAAEDRNAIVEEEENEEEEESDADGRSSDAVDGIGLAGGEDGGDEGAAVGGEELDGE 85
           GV+ AAEDR AIV+E++++++ ES    R ++ VDGIGLAG E+  DEGAA+GGEELDGE
Sbjct: 5   GVVTAAEDRYAIVQEKQDDDKNESHPHRRPTNPVDGIGLAGRENARDEGAALGGEELDGE 64

Query: 86  EEDDGKEEEAEGAEEVGDGFGDGLALVAEDERNDDH 122
           EE+DG+E+++  A+++G+G GDGLALVA   R+  H
Sbjct: 65  EEEDGEEQKSNRAQQLGNGLGDGLALVANKGRHHKH 100

BLAST of Moc05g06860 vs. NCBI nr
Match: KAG5144059.1 (hypothetical protein JHK82_019754 [Glycine max])

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-10
Identity = 42/72 (58.33%), Postives = 60/72 (83.33%), Query Frame = 0

Query: 22  ISVAGVIVAAEDRNAIVEEEENEEEEESDADGRSSDAVDGIGLAGGEDGGDEGAAVGGEE 81
           +SV G++ A +   A+ +EEENE+EEE DA+G +++AVDG+G AGGE+GGDEGA +GGEE
Sbjct: 911 VSVIGIVAAEDGEAAVEQEEENEDEEECDAEGGAAEAVDGVGFAGGEEGGDEGAPIGGEE 970

Query: 82  LDGEEEDDGKEE 94
           L+GE+E DG++E
Sbjct: 971 LNGEKEKDGQKE 982

BLAST of Moc05g06860 vs. ExPASy TrEMBL
Match: A0A5N6QT29 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005546 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.9e-04
Identity = 36/80 (45.00%), Postives = 56/80 (70.00%), Query Frame = 0

Query: 26  GVIVAAEDRNAIVEEEENEEEEESDADGRSSDAVDGIGLAGGEDGGDEGAAVGGEELDGE 85
           G++V+AEDR+ +V+E++NE++ E  +D R +  +DGIG+   +D  D+ A +GGEELDGE
Sbjct: 26  GIVVSAEDRHPVVQEKQNEDQNECHSDWRPTGPMDGIGITSRKDVRDKRAVLGGEELDGE 85

Query: 86  EEDDGKEEEAEGAEEVGDGF 106
                 EE+   A+E+GDGF
Sbjct: 86  ------EEKTHRAQELGDGF 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF7834509.11.9e-3369.84condensin-2 complex subunit D3 [Senna tora][more]
KAF5452335.12.2e-1356.25hypothetical protein F2P56_027343 [Juglans regia][more]
KAG5144059.13.0e-1058.33hypothetical protein JHK82_019754 [Glycine max][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5N6QT295.9e-0445.00Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005546 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 28..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g06860.1Moc05g06860.1mRNA