Moc05g04890 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g04890
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	DNA-directed RNA polymerase II subunit 1-like
Location	chr5: 3360368 .. 3362031 (+)
RNA-Seq Expression	Moc05g04890
Synteny	Moc05g04890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATCTTCCTCGGTTTGGCCGCACATGGCAACGTTTCTCTTCCCTCCCCCGCCCCGCCACTGCCTCACAACCGGAACAACTTCAGCCGGCACCAGCGCCGGCGCCGATGAATGGGCGTGAAATTTCACCCAACTCTCCGGTCACCGCCCAAGTTCTCCAAACTTCTCCAATTAGAGAAAGATCTTCTCGACTTCCATCTCCCACGAAGAAATTTGCCTCGCCGCCTTCTTCTCCAAAATATAGACCCGCCGCCGCCGCTTCGCCTCCCAAGCCACTGTCTCCAACTCCGTCGTACAACCGTTACGACGGCGAACGACGGTCTAGTGCCACCACATCTCCCAAAGCCATTAAACCCTCCTATACCTCTCCGCCGCTGTCGCCTGCCAAGCACAAATACCCAACCGCCGCCACCGCCGCACCGCTCTCTCCTCTAACTCTGCCTCGGTCGGAGGCGAAACATGAACCTGGGCCCACGATTCGATCCAGAAGCCCACCGGAGGTTAGTTAACTTTAAATATTACGATATATATTAATTTCTTTTTACGTAAATACTACTTTTATTGGTATAATTTAATTATTTTGATTATTGTGCTATCAAAATGTCAATTTTTTTTGGTCTACTTTCCATTTTTATTCGTTTTAGTTATCATAATTTTTAAAAGTCCCTTTTAATTTTTCATATTTTTTTTATAAAGGGACCATTTTAATTTTTTTTTGCTATGACTGAATAAATTACCTCCCAAATCAAAAGTTTAAACTCATGATTTTGATAAATTTAATTATATATATGGTCGAAAATTTTATTCGAGTTCTTTTCTGTCACAATTTTAGCGTCATATTTTATTTACTAATTTTAAAAAAATGTAATCATAAATTTGTATTAAAATATTTTTATTCCATAAGATATGTGTTGAAATGTTGCAACAAAGAACAAAAGATGTTCAACTTTAAAAAGTAAACTAAAACGGACCTATCAAGATTTATAAGATATATGAACTATGATACTCCTTGACCAAATGATTTTGAGATGACACTCGACGATATTAGTATTAGAGTTGAACAAGTTTAAACGACCATCCAAGCAAAAAAATGAGATTCAACCAACATTAATGTATCCATAATTTACGTGTGTATGAGTTTAACAAGATGACTTTCTCTTGTTTTGTTCCAATCAAATTATAGTTTATCATTGAATAATTCAGGTTAGTTCTGGTATATATTTAATCTTGTATACATATTCTTAATCAGGTCGAGCAGAAATCGATACATTATCCGAAGGTCGAGAAGCCGACGAAACCCGATCACCGGCCGTCAGAGTACAACTCCGGCAAGCCCCAATACAAGCAGCAGCAGCAACAGAGCGACGTGATAACCATCAAAGGCGAGAACGTAGGCGCCATCATGCACATAACTCAATCATCTGACGGCACAGAAATGGTGAAGAAAAAGCCAAGCACAGAGAGTGGAAACGATGATGAGAAAGGCAACAAATCAAGTTCTTTGCCGGCGAAATCATTCATGAACAGCAATTTTCAAGGGGTCAATAATTCCGTTCTGTACAACTCCTCCTTCAGCCACCGTGATCCAGGCCTGCACCTGTCTTTCTCCAAGAAGCCCGCCCATGGCCATGCCCAATCTGTTCTTGGTTCGACCTACTAG

mRNA sequence

ATGGCAAATCTTCCTCGGTTTGGCCGCACATGGCAACGTTTCTCTTCCCTCCCCCGCCCCGCCACTGCCTCACAACCGGAACAACTTCAGCCGGCACCAGCGCCGGCGCCGATGAATGGGCGTGAAATTTCACCCAACTCTCCGGTCACCGCCCAAGTTCTCCAAACTTCTCCAATTAGAGAAAGATCTTCTCGACTTCCATCTCCCACGAAGAAATTTGCCTCGCCGCCTTCTTCTCCAAAATATAGACCCGCCGCCGCCGCTTCGCCTCCCAAGCCACTGTCTCCAACTCCGTCGTACAACCGTTACGACGGCGAACGACGGTCTAGTGCCACCACATCTCCCAAAGCCATTAAACCCTCCTATACCTCTCCGCCGCTGTCGCCTGCCAAGCACAAATACCCAACCGCCGCCACCGCCGCACCGCTCTCTCCTCTAACTCTGCCTCGGTCGGAGGCGAAACATGAACCTGGGCCCACGATTCGATCCAGAAGCCCACCGGAGGTCGAGCAGAAATCGATACATTATCCGAAGGTCGAGAAGCCGACGAAACCCGATCACCGGCCGTCAGAGTACAACTCCGGCAAGCCCCAATACAAGCAGCAGCAGCAACAGAGCGACGTGATAACCATCAAAGGCGAGAACGTAGGCGCCATCATGCACATAACTCAATCATCTGACGGCACAGAAATGGTGAAGAAAAAGCCAAGCACAGAGAGTGGAAACGATGATGAGAAAGGCAACAAATCAAGTTCTTTGCCGGCGAAATCATTCATGAACAGCAATTTTCAAGGGGTCAATAATTCCGTTCTGTACAACTCCTCCTTCAGCCACCGTGATCCAGGCCTGCACCTGTCTTTCTCCAAGAAGCCCGCCCATGGCCATGCCCAATCTGTTCTTGGTTCGACCTACTAG

Coding sequence (CDS)

ATGGCAAATCTTCCTCGGTTTGGCCGCACATGGCAACGTTTCTCTTCCCTCCCCCGCCCCGCCACTGCCTCACAACCGGAACAACTTCAGCCGGCACCAGCGCCGGCGCCGATGAATGGGCGTGAAATTTCACCCAACTCTCCGGTCACCGCCCAAGTTCTCCAAACTTCTCCAATTAGAGAAAGATCTTCTCGACTTCCATCTCCCACGAAGAAATTTGCCTCGCCGCCTTCTTCTCCAAAATATAGACCCGCCGCCGCCGCTTCGCCTCCCAAGCCACTGTCTCCAACTCCGTCGTACAACCGTTACGACGGCGAACGACGGTCTAGTGCCACCACATCTCCCAAAGCCATTAAACCCTCCTATACCTCTCCGCCGCTGTCGCCTGCCAAGCACAAATACCCAACCGCCGCCACCGCCGCACCGCTCTCTCCTCTAACTCTGCCTCGGTCGGAGGCGAAACATGAACCTGGGCCCACGATTCGATCCAGAAGCCCACCGGAGGTCGAGCAGAAATCGATACATTATCCGAAGGTCGAGAAGCCGACGAAACCCGATCACCGGCCGTCAGAGTACAACTCCGGCAAGCCCCAATACAAGCAGCAGCAGCAACAGAGCGACGTGATAACCATCAAAGGCGAGAACGTAGGCGCCATCATGCACATAACTCAATCATCTGACGGCACAGAAATGGTGAAGAAAAAGCCAAGCACAGAGAGTGGAAACGATGATGAGAAAGGCAACAAATCAAGTTCTTTGCCGGCGAAATCATTCATGAACAGCAATTTTCAAGGGGTCAATAATTCCGTTCTGTACAACTCCTCCTTCAGCCACCGTGATCCAGGCCTGCACCTGTCTTTCTCCAAGAAGCCCGCCCATGGCCATGCCCAATCTGTTCTTGGTTCGACCTACTAG

Protein sequence

MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIRERSSRLPSPTKKFASPPSSPKYRPAAAASPPKPLSPTPSYNRYDGERRSSATTSPKAIKPSYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKVEKPTKPDHRPSEYNSGKPQYKQQQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKPSTESGNDDEKGNKSSSLPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAHGHAQSVLGSTY

Homology

[Close]

BLAST of Moc05g04890 vs. NCBI nr
Match: XP_022147442.1 (proline-rich receptor-like protein kinase PERK2 [Momordica charantia])

HSP 1 Score: 581.6 bits (1498), Expect = 3.8e-162
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 1   MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR 60
           MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR
Sbjct: 1   MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR 60

Query: 61  ERSSRLPSPTKKFASPPSSPKYRPAAAASPPKPLSPTPSYNRYDGERRSSATTSPKAIKP 120
           ERSSRLPSPTKKFASPPSSPKYRPAAAASPPKPLSPTPSYNRYDGERRSSATTSPKAIKP
Sbjct: 61  ERSSRLPSPTKKFASPPSSPKYRPAAAASPPKPLSPTPSYNRYDGERRSSATTSPKAIKP 120

Query: 121 SYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKVE 180
           SYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKVE
Sbjct: 121 SYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKVE 180

Query: 181 KPTKPDHRPSEYNSGKPQYKQQQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKPSTES 240
           KPTKPDHRPSEYNSGKPQYKQQQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKPSTES
Sbjct: 181 KPTKPDHRPSEYNSGKPQYKQQQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKPSTES 240

Query: 241 GNDDEKGNKSSSLPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAHGHAQSVL 300
           GNDDEKGNKSSSLPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAHGHAQSVL
Sbjct: 241 GNDDEKGNKSSSLPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAHGHAQSVL 300

Query: 301 GSTY 305
           GSTY
Sbjct: 301 GSTY 304

[Close]

BLAST of Moc05g04890 vs. NCBI nr
Match: XP_022945677.1 (DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata])

HSP 1 Score: 355.1 bits (910), Expect = 5.8e-94
Identity = 202/299 (67.56%), Postives = 231/299 (77.26%), Query Frame = 0


Query: 1   MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR 60
           MANLPRFGRTW RFSSLPRP TA + +     P PA  +  E+ P++P TA VLQTSPI+
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLD----VPPPAATSEPEVYPSAPRTANVLQTSPIK 60

Query: 61  ERSSRLPSPTKKFASPPSSPKYRPAA-AASPPKPLSPTPSYNRYDGERRSSATTSPKAIK 120
           ERS R+ SP +K+ SPP+SPKYR AA + SP KPLSP P+YNRYDGERRSSA  SPK  K
Sbjct: 61  ERSPRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFK 120

Query: 121 PSYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKV 180
            +YTSPP SPAKHKY T+   APLSPL LP  E +HEP P +R RSPPEV+QKS+ Y K 
Sbjct: 121 TTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKT 180

Query: 181 --EKPTKPDHRPSEYNSGKPQYKQ-QQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKP 240
             EKP K DHR SEY+SGKPQ KQ  QQQSDVI IKGENVGA+MHITQSSD TE  KKKP
Sbjct: 181 TSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKP 240

Query: 241 STESGNDDEK-GNKSSS-LPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAH 294
           +    +++EK  NKSSS +P KSFMNSNFQGVNNS+LYNSS SHRDPGLHL+F+KKP H
Sbjct: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTH 295

[Close]

BLAST of Moc05g04890 vs. NCBI nr
Match: KAG6597058.1 (hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 354.8 bits (909), Expect = 7.6e-94
Identity = 202/299 (67.56%), Postives = 231/299 (77.26%), Query Frame = 0


Query: 1   MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR 60
           MANLPRFGRTW RFSSLPRP TA + +     P PA  +  E+ P++P TA VLQTSPI+
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLD----VPPPAATSEPEVYPSAPRTANVLQTSPIK 60

Query: 61  ERSSRLPSPTKKFASPPSSPKYRPAA-AASPPKPLSPTPSYNRYDGERRSSATTSPKAIK 120
           ERS R+ SP +K+ SPP+SPKYR AA + SP KPLSP P+YNRYDGERRSSA  SPK  K
Sbjct: 61  ERSPRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFK 120

Query: 121 PSYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKV 180
            +YTSPP SPAKHKY T+   APLSPL LP  E +HEP P +R RSPPEV+QKS+ Y K 
Sbjct: 121 TTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKT 180

Query: 181 --EKPTKPDHRPSEYNSGKPQYKQ-QQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKP 240
             EKP K DHR SEY+SGKPQ KQ  QQQSDVI IKGENVGA+MHITQSSD TE  KKKP
Sbjct: 181 TSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKP 240

Query: 241 STESGNDDEK-GNKSSS-LPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAH 294
           +    +++EK  NKSSS +P KSFMNSNFQGVNNS+LYNSS SHRDPGLHL+F+KKP H
Sbjct: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTH 295

[Close]

BLAST of Moc05g04890 vs. NCBI nr
Match: XP_023538835.1 (proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 354.0 bits (907), Expect = 1.3e-93
Identity = 203/299 (67.89%), Postives = 230/299 (76.92%), Query Frame = 0


Query: 1   MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR 60
           MANLPRFGRTW RFSSLPRP TA + +   PA A  P    E+ P  P TA VLQTSPI+
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAAASEP----EVYPPPPRTANVLQTSPIK 60

Query: 61  ERSSRLPSPTKKFASPPSSPKYRPAA-AASPPKPLSPTPSYNRYDGERRSSATTSPKAIK 120
           ERS R+PSP +K+ SPP+SPKYR AA + SP KPLSP P+YNRYDGERR+SA  SPK  K
Sbjct: 61  ERSPRIPSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRTSALASPKTFK 120

Query: 121 PSYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKV 180
            +YTSPP SPAKHKY T+   APLSPL LP  E +HEP P +R RSPPEV+QKS+ Y K 
Sbjct: 121 TTYTSPPRSPAKHKYSTSTLQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKT 180

Query: 181 --EKPTKPDHRPSEYNSGKPQYKQ-QQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKP 240
             EKP K DHR SEY+SGKPQ KQ  QQQSDVI IKGENVGA+MHITQSSD TE  KKKP
Sbjct: 181 TSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKP 240

Query: 241 STESGNDDEK-GNKSSS-LPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAH 294
           +    +++EK  NKSSS +P KSFMNSNFQGVNNS+LYNSS SHRDPGLHL+F+KKP H
Sbjct: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTH 295

[Close]

BLAST of Moc05g04890 vs. NCBI nr
Match: XP_022974814.1 (DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_022974815.1 DNA-directed RNA polymerase II subunit 1-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 353.2 bits (905), Expect = 2.2e-93
Identity = 202/299 (67.56%), Postives = 231/299 (77.26%), Query Frame = 0


Query: 1   MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR 60
           MANLPRFGRTW RFSSLPRPATA + +     P PA  +  E+  ++P TA VLQTSPI+
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFD----VPPPAATSEPEVFSSAPPTANVLQTSPIK 60

Query: 61  ERSSRLPSPTKKFASPPSSPKYRPAA-AASPPKPLSPTPSYNRYDGERRSSATTSPKAIK 120
           ERS R+ SP +K+ SPP+SPKYR AA + SP KPLSP P+YNRYDGERRSSA  SPK  K
Sbjct: 61  ERSPRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFK 120

Query: 121 PSYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKV 180
            +YTSPP SPAKHKY T+   APLSPL LP  E +HEP P +R RSPPEV+QKS+ Y K 
Sbjct: 121 TTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKT 180

Query: 181 --EKPTKPDHRPSEYNSGKPQYKQ-QQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKP 240
             EKP K DHR SEY+SGKPQ KQ  QQQSDVI IKGENVGA+MHITQSSD TE  KKKP
Sbjct: 181 TSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKP 240

Query: 241 STESGNDDEK-GNKSSS-LPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAH 294
           +    +++EK  NKSSS +P KSFMNSNFQGVNNS+LYNSS SHRDPGLHL+F+KKP H
Sbjct: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTH 295

[Close]

BLAST of Moc05g04890 vs. ExPASy TrEMBL
Match: A0A6J1D2D2 (proline-rich receptor-like protein kinase PERK2 OS=Momordica charantia OX=3673 GN=LOC111016367 PE=4 SV=1)

HSP 1 Score: 581.6 bits (1498), Expect = 1.9e-162
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 1   MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR 60
           MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR
Sbjct: 1   MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR 60

Query: 61  ERSSRLPSPTKKFASPPSSPKYRPAAAASPPKPLSPTPSYNRYDGERRSSATTSPKAIKP 120
           ERSSRLPSPTKKFASPPSSPKYRPAAAASPPKPLSPTPSYNRYDGERRSSATTSPKAIKP
Sbjct: 61  ERSSRLPSPTKKFASPPSSPKYRPAAAASPPKPLSPTPSYNRYDGERRSSATTSPKAIKP 120

Query: 121 SYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKVE 180
           SYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKVE
Sbjct: 121 SYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKVE 180

Query: 181 KPTKPDHRPSEYNSGKPQYKQQQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKPSTES 240
           KPTKPDHRPSEYNSGKPQYKQQQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKPSTES
Sbjct: 181 KPTKPDHRPSEYNSGKPQYKQQQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKPSTES 240

Query: 241 GNDDEKGNKSSSLPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAHGHAQSVL 300
           GNDDEKGNKSSSLPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAHGHAQSVL
Sbjct: 241 GNDDEKGNKSSSLPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAHGHAQSVL 300

Query: 301 GSTY 305
           GSTY
Sbjct: 301 GSTY 304

[Close]

BLAST of Moc05g04890 vs. ExPASy TrEMBL
Match: A0A6J1G1L2 (DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=LOC111449836 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.8e-94
Identity = 202/299 (67.56%), Postives = 231/299 (77.26%), Query Frame = 0


Query: 1   MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR 60
           MANLPRFGRTW RFSSLPRP TA + +     P PA  +  E+ P++P TA VLQTSPI+
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLD----VPPPAATSEPEVYPSAPRTANVLQTSPIK 60

Query: 61  ERSSRLPSPTKKFASPPSSPKYRPAA-AASPPKPLSPTPSYNRYDGERRSSATTSPKAIK 120
           ERS R+ SP +K+ SPP+SPKYR AA + SP KPLSP P+YNRYDGERRSSA  SPK  K
Sbjct: 61  ERSPRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFK 120

Query: 121 PSYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKV 180
            +YTSPP SPAKHKY T+   APLSPL LP  E +HEP P +R RSPPEV+QKS+ Y K 
Sbjct: 121 TTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKT 180

Query: 181 --EKPTKPDHRPSEYNSGKPQYKQ-QQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKP 240
             EKP K DHR SEY+SGKPQ KQ  QQQSDVI IKGENVGA+MHITQSSD TE  KKKP
Sbjct: 181 TSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKP 240

Query: 241 STESGNDDEK-GNKSSS-LPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAH 294
           +    +++EK  NKSSS +P KSFMNSNFQGVNNS+LYNSS SHRDPGLHL+F+KKP H
Sbjct: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTH 295

[Close]

BLAST of Moc05g04890 vs. ExPASy TrEMBL
Match: A0A6J1IEX0 (DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 1.1e-93
Identity = 202/299 (67.56%), Postives = 231/299 (77.26%), Query Frame = 0


Query: 1   MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR 60
           MANLPRFGRTW RFSSLPRPATA + +     P PA  +  E+  ++P TA VLQTSPI+
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFD----VPPPAATSEPEVFSSAPPTANVLQTSPIK 60

Query: 61  ERSSRLPSPTKKFASPPSSPKYRPAA-AASPPKPLSPTPSYNRYDGERRSSATTSPKAIK 120
           ERS R+ SP +K+ SPP+SPKYR AA + SP KPLSP P+YNRYDGERRSSA  SPK  K
Sbjct: 61  ERSPRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFK 120

Query: 121 PSYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKV 180
            +YTSPP SPAKHKY T+   APLSPL LP  E +HEP P +R RSPPEV+QKS+ Y K 
Sbjct: 121 TTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKT 180

Query: 181 --EKPTKPDHRPSEYNSGKPQYKQ-QQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKP 240
             EKP K DHR SEY+SGKPQ KQ  QQQSDVI IKGENVGA+MHITQSSD TE  KKKP
Sbjct: 181 TSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKP 240

Query: 241 STESGNDDEK-GNKSSS-LPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAH 294
           +    +++EK  NKSSS +P KSFMNSNFQGVNNS+LYNSS SHRDPGLHL+F+KKP H
Sbjct: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTH 295

[Close]

BLAST of Moc05g04890 vs. ExPASy TrEMBL
Match: A0A6J1IHF4 (DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.4e-93
Identity = 202/299 (67.56%), Postives = 231/299 (77.26%), Query Frame = 0


Query: 1   MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR 60
           MANLPRFGRTW RFSSLPRPATA + +     P PA  +  E+  ++P TA VLQTSPI+
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFD----VPPPAATSEPEVFSSAPPTANVLQTSPIK 60

Query: 61  ERSSRLPSPTKKFASPPSSPKYRPAA-AASPPKPLSPTPSYNRYDGERRSSATTSPKAIK 120
           ERS R+ SP +K+ SPP+SPKYR AA + SP KPLSP P+YNRYDGERRSSA  SPK  K
Sbjct: 61  ERSPRITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFK 120

Query: 121 PSYTSPPLSPAKHKYPTAATAAPLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKV 180
            +YTSPP SPAKHKY T+   APLSPL LP  E +HEP P +R RSPPEV+QKS+ Y K 
Sbjct: 121 TTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKT 180

Query: 181 --EKPTKPDHRPSEYNSGKPQYKQ-QQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKP 240
             EKP K DHR SEY+SGKPQ KQ  QQQSDVI IKGENVGA+MHITQSSD TE  KKKP
Sbjct: 181 TSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKP 240

Query: 241 STESGNDDEK-GNKSSS-LPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFSKKPAH 294
           +    +++EK  NKSSS +P KSFMNSNFQGVNNS+LYNSS SHRDPGLHL+F+KKP H
Sbjct: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTH 295

[Close]

BLAST of Moc05g04890 vs. ExPASy TrEMBL
Match: A0A0A0L5T3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.5e-82
Identity = 189/304 (62.17%), Postives = 225/304 (74.01%), Query Frame = 0


Query: 1   MANLPRFGRTWQRFSSLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIR 60
           M+NLPRFGR W RFSSLPRP TA++PE      A  P    E+ P++  T    QTSPI+
Sbjct: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEP----EVFPSAVPTTNTFQTSPIK 60

Query: 61  ERSSRLPSPTKKFASPPSSPKYRPAAAASPPKPLSPTPSYNRYDGERRSSATTSPKAIKP 120
           +R+ RL SP KKF+SPPSSPKY  A   SP KPLSP P +NRY+GERR+SATTSPK  KP
Sbjct: 61  QRTPRLSSPVKKFSSPPSSPKYSGAGTVSPRKPLSPPPVHNRYEGERRTSATTSPKTFKP 120

Query: 121 SYTSPPLSPAKHKYPTAATA-APLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHY--P 180
           ++ SPP SP+K ++ T  TA APLSPL LPRS+ + EP  ++R RSPPE+EQK I Y   
Sbjct: 121 THISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTT 180

Query: 181 KVEKPTKPDH--RPSEYNSGKPQYKQQQQ--QSDVITIKGENVGAIMHITQSSDGTEMVK 240
             EKPTK DH  +  EY + KPQ KQQ Q  QSDVI IKGENVGA+MHITQSSDG+E++K
Sbjct: 181 TTEKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIK 240

Query: 241 KKPST-ESGNDDEKGNKS-SSLPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSF-SKK 295
           KKP+  +S  ++EK NKS S+ P KSFMNSNFQGVNNS+LYNSS SHRDPGLHL+F SKK
Sbjct: 241 KKPTVGQSKENEEKTNKSNSNYPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFGSKK 300

[Close]

BLAST of Moc05g04890 vs. TAIR 10
Match: AT2G46630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-11
Identity = 97/338 (28.70%), Postives = 144/338 (42.60%), Query Frame = 0


Query: 16  SLPRPATASQPEQLQPAPAPAPMNGREISPNSPVTAQVLQTSPIRERSSRLPSPTKKFAS 75
           S PR      P + Q  P+P     ++  P +P   +   TSP +ERS    SP  +  S
Sbjct: 47  SPPRQRQPRSPPRQQDPPSPP---RQQQQPLTPPRQKAPPTSPPQERSP-YHSPPSRHMS 106

Query: 76  PPSSPKYRPAAAASPPKPLS-----PTPSY----------NRYDGERRSSATTSPKAIKP 135
           PP+ PK   AA   PP P S     P+P            N       SS +T+ +++K 
Sbjct: 107 PPTPPK---AATPPPPPPRSSYTSPPSPKEVQEALPPRKPNSPPSPAHSSRSTTSESVKT 166

Query: 136 SYTSPPLSPAKHKYPTAATAAPLS-PLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHYPKV 195
              SP  S    K P+    +P S P +L  SE +      + +    +  + + H    
Sbjct: 167 --RSPSESENHRKAPSPRVLSPYSLPASLLHSERETTQKNILTAEKTSQTHETNHHNQNH 226

Query: 196 EKPTKPDHRPSEYNS--------GKPQYKQQQQQSD----------VITIKGENVGAIMH 255
                 +H  ++ +S        G    K  +Q S           VITI GEN GA+M 
Sbjct: 227 NHDYNQNHNYNQNHSYNQNQNHQGNNPKKMHRQPSSSDSENIMSTRVITIAGENKGAVME 286

Query: 256 ITQSSDGTEM------------------VKKKPSTESGNDDEKGNK----------SSSL 292
           I +S  G +                    + + S+ S +D+ +G K          +S+L
Sbjct: 287 ILRSPQGNKTGGSGTHSSRVSHGTGEKGRRLQSSSSSSSDEGEGKKKTTKNVPNKGNSNL 346

[Close]

BLAST of Moc05g04890 vs. TAIR 10
Match: AT1G63310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20362.1); Has 78 Blast hits to 77 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 4.1e-05
Identity = 30/95 (31.58%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 194 SGKPQYKQQQQQSDVITIKGENVGAIMHITQSSDGTEMVKKKPSTESGNDDEKGNKSSSL 253
           +G  QY +++    VIT+ G N+GA M            K +     G+ D+ G+     
Sbjct: 38  AGPSQYDEEEDGIRVITLSGSNLGATM------------KTELDNNHGDRDQNGDHELDF 97

Query: 254 PAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSFS 289
              +++NSNFQ VNNS++  + +   DPG+HL  S
Sbjct: 98  -LSTYVNSNFQAVNNSIMIGAKYETHDPGVHLDIS 119

The following BLAST results are available for this feature:

BLAST of Moc05g04890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147442.1	3.8e-162	100.00	proline-rich receptor-like protein kinase PERK2 [Momordica charantia]	[more]
XP_022945677.1	5.8e-94	67.56	DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata]	[more]
KAG6597058.1	7.6e-94	67.56	hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023538835.1	1.3e-93	67.89	proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo]	[more]
XP_022974814.1	2.2e-93	67.56	DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_...	[more]

BLAST of Moc05g04890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g04890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D2D2	1.9e-162	100.00	proline-rich receptor-like protein kinase PERK2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1G1L2	2.8e-94	67.56	DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IEX0	1.1e-93	67.56	DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=...	[more]
A0A6J1IHF4	1.4e-93	67.56	DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=...	[more]
A0A0A0L5T3	1.5e-82	62.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119290 PE=4 SV=1	[more]

BLAST of Moc05g04890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46630.1	1.3e-11	28.70	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXP...	[more]
AT1G63310.1	4.1e-05	31.58	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..97
None	No IPR available	PANTHER	PTHR33472:SF1	EXTENSIN-RELATED	coord: 200..293
None	No IPR available	PANTHER	PTHR33472	OS01G0106600 PROTEIN	coord: 200..293

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g04890.1	Moc05g04890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity