Moc05g02880 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g02880
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	B3 domain-containing protein Os04g0386900-like
Location	chr5: 1979909 .. 1980954 (-)
RNA-Seq Expression	Moc05g02880
Synteny	Moc05g02880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCACAAGAGAAACCTCCGTCAGAGCCTGCAGAAATGGAGCCGCGAATCGATGAAATTTTTCCACTCTCAAACAAACCGTTCCATGGTGTTATTCTTGGAAAATCGCATGTTGCTCCTGCATATCTTATGGTAAGTTGTCTAGAAATTACTCAGAAATCTAATAAGAGTTATGTACTGAATTGAATTGTGGGTGACTGTATTGCATAAACCCCCCAAAATGTCTCGAGACACCCCCTGCCTCTGAGCCGTCATTTAGGGGCCTTGGCAGGTGATCCGGACTGTTTCCCTTTTACCCATATCAATGAAGAAGGGAGAAGTTAGATGATTCTTCCATGTTGAGTTGTGGGATATCCGTTAAAGCAAAGACTCTGAAGTGCCTGAAGTAGGAAAAGATTTAATGCTTACTTGGATAAGTAAGCAAACTCATTTTTTGGAATTGCTAGTTGGCCTAGTTTATGTGTCCCAATCAATGTGCTGAGTGATTGATGATGATATCCAAGTTGCTGATTTATGGCTAAATCTGCAAAATATCTGGCTAGTTCATAGTTTTGGTCTCCTTCTTGTTATCATTATTGTTTCTTAAAGCAAGCTTTGAAGAGAAACTTGAAAGATTAGCTAGTCTGGAAACTATTACAAACACAGTTGAGAACAAAATGTTCAAATTATGCATTGTTTAGGAAAACAAAGATATGAGTTTGAATAGTGAAGAATGACAAGATTTTAATTTGCAGAGCTTGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTGTGATCCATGGGGTTGTTTACTGTGGGGGCAAGGAATGGAGGGTAGATTACTATGGAAACCGACGCGGTAGGACGCTCGATACCAGAGGCTGGAGGAAGTTTGTTGATGAAAATCATCTCAAATATGGAGATGCTTGTGTATTTGAGCTCATGGAATGTAGCAGCAGCATGGTCAAATTCAGAGTTCAAATTCTCAGAGGTGACATTCCTGTACAACTGCACGACAAGTTCAGGGGGGAGAGTAGAGACACTCCTATAAATATTGACTAG

mRNA sequence

ATGCAGTCACAAGAGAAACCTCCGTCAGAGCCTGCAGAAATGGAGCCGCGAATCGATGAAATTTTTCCACTCTCAAACAAACCGTTCCATGGTGTTATTCTTGGAAAATCGCATGTTGCTCCTGCATATCTTATGAGCTTGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTGTGATCCATGGGGTTGTTTACTGTGGGGGCAAGGAATGGAGGGTAGATTACTATGGAAACCGACGCGGTAGGACGCTCGATACCAGAGGCTGGAGGAAGTTTGTTGATGAAAATCATCTCAAATATGGAGATGCTTGTGTATTTGAGCTCATGGAATGTAGCAGCAGCATGGTCAAATTCAGAGTTCAAATTCTCAGAGGTGACATTCCTGTACAACTGCACGACAAGTTCAGGGGGGAGAGTAGAGACACTCCTATAAATATTGACTAG

Coding sequence (CDS)

ATGCAGTCACAAGAGAAACCTCCGTCAGAGCCTGCAGAAATGGAGCCGCGAATCGATGAAATTTTTCCACTCTCAAACAAACCGTTCCATGGTGTTATTCTTGGAAAATCGCATGTTGCTCCTGCATATCTTATGAGCTTGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTGTGATCCATGGGGTTGTTTACTGTGGGGGCAAGGAATGGAGGGTAGATTACTATGGAAACCGACGCGGTAGGACGCTCGATACCAGAGGCTGGAGGAAGTTTGTTGATGAAAATCATCTCAAATATGGAGATGCTTGTGTATTTGAGCTCATGGAATGTAGCAGCAGCATGGTCAAATTCAGAGTTCAAATTCTCAGAGGTGACATTCCTGTACAACTGCACGACAAGTTCAGGGGGGAGAGTAGAGACACTCCTATAAATATTGACTAG

Protein sequence

MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRVQILRGDIPVQLHDKFRGESRDTPINID

Homology

[Close]

BLAST of Moc05g02880 vs. NCBI nr
Match: XP_022146910.1 (B3 domain-containing protein Os04g0386900-like [Momordica charantia] >XP_022146911.1 B3 domain-containing protein Os04g0386900-like [Momordica charantia])

HSP 1 Score: 310.8 bits (795), Expect = 6.1e-81
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI 60
           MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI
Sbjct: 1   MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI 60

Query: 61  HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV 120
           HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV
Sbjct: 61  HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV 120

Query: 121 QILRGDIPVQLHDKFRGESRDTPINID 148
           QILRGDIPVQLHDKFRGESRDTPINID
Sbjct: 121 QILRGDIPVQLHDKFRGESRDTPINID 147

[Close]

BLAST of Moc05g02880 vs. NCBI nr
Match: XP_022147119.1 (B3 domain-containing protein Os04g0386900-like [Momordica charantia])

HSP 1 Score: 262.3 bits (669), Expect = 2.5e-66
Identity = 124/147 (84.35%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 1   MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI 60
           MQSQEKPPSE   MEPR  EIFPLS+KPFHGVIL KSHVAP Y M+LPAKFHSVLPAIVI
Sbjct: 1   MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVI 60

Query: 61  HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV 120
           HGV+YCGGKEW VDYYGNRRG++LDTR WRKFV++NHLK GDACVFELMECSSS +KFRV
Sbjct: 61  HGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKSGDACVFELMECSSSTLKFRV 120

Query: 121 QILRGDIPVQLHDKFRGESRDTPINID 148
           QILRGDIPVQLHDKF GES+DTPI ID
Sbjct: 121 QILRGDIPVQLHDKFSGESKDTPIKID 147

[Close]

BLAST of Moc05g02880 vs. NCBI nr
Match: XP_022941967.1 (B3 domain-containing protein Os04g0386900-like [Cucurbita moschata] >XP_022941973.1 B3 domain-containing protein Os04g0386900-like [Cucurbita moschata])

HSP 1 Score: 235.0 bits (598), Expect = 4.3e-58
Identity = 108/147 (73.47%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 1   MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI 60
           MQSQEKPP EP EM+P+   I PLS KP+HGVIL KSHVAP   M LPAKFHSVLPAI+I
Sbjct: 1   MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMI 60

Query: 61  HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV 120
             V+YC GK+W++DYYGNRRG+ LDT+ WRKFV++NHLK GDACVFEL+ECSSS++KFRV
Sbjct: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120

Query: 121 QILRGDIPVQLHDKFRGESRDTPINID 148
           QILRGDIP +LH+KF GESR+TPI ID
Sbjct: 121 QILRGDIPFELHEKFSGESRNTPILID 147

[Close]

BLAST of Moc05g02880 vs. NCBI nr
Match: XP_022974195.1 (B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022974196.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022974197.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022975683.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022975684.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022975685.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima])

HSP 1 Score: 235.0 bits (598), Expect = 4.3e-58
Identity = 108/147 (73.47%), Postives = 127/147 (86.39%), Query Frame = 0


Query: 1   MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI 60
           MQSQEKPP+EP EM+P+   I PLS KP+HGVIL KSHVAP   M LPAKFHSVLPAI+I
Sbjct: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMI 60

Query: 61  HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV 120
             V+YC GK+W++DYYGNRRG+ LDT+ WRKFV++NHLK GDACVFEL+ECSSS++KFRV
Sbjct: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVLKFRV 120

Query: 121 QILRGDIPVQLHDKFRGESRDTPINID 148
           QILRGDIP +LH+KF GESR+TPI ID
Sbjct: 121 QILRGDIPFELHEKFSGESRNTPILID 147

[Close]

BLAST of Moc05g02880 vs. NCBI nr
Match: XP_023539026.1 (B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo] >KAG6597214.1 B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028685.1 B3 domain-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.0 bits (598), Expect = 4.3e-58
Identity = 107/147 (72.79%), Postives = 127/147 (86.39%), Query Frame = 0


Query: 1   MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI 60
           MQSQEKPP+EP EM+P+   I PLS KP+HGVIL KSHVAP   M +PAKFHSVLPAI+I
Sbjct: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60

Query: 61  HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV 120
             V+YC GK+W++DYYGNRRG+ LDT+ WRKFV++NHLK GDACVFEL+ECSSS++KFRV
Sbjct: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120

Query: 121 QILRGDIPVQLHDKFRGESRDTPINID 148
           QILRGDIP +LH+KF GESR+TPI ID
Sbjct: 121 QILRGDIPFELHEKFSGESRNTPILID 147

[Close]

BLAST of Moc05g02880 vs. ExPASy Swiss-Prot
Match: Q7XLP4 (B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0386900 PE=2 SV=3)

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-17
Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = 0


Query: 5   EKPPSEPAEMEPR---IDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIH 64
           E  P  P E EP       + PL  KP+   I+ KSHV P + + +P  F  +LP+    
Sbjct: 65  EAAPPRPPEPEPEKVARHGVLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTP 124

Query: 65  GVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELM---ECSSSMVKF 124
             +   G+ W + + G R  + L+  GWR F  +N L+ GD CVFEL+         V+F
Sbjct: 125 ATLSWRGRSWGMRFTGGRLIQRLEA-GWRGFAVDNDLRLGDGCVFELLVGGGGEQERVEF 184

Query: 125 RVQILRGDIPVQLHDKFRGESRDTPINID 148
           RVQ+LR +IP ++  +  G +  TPI ID
Sbjct: 185 RVQVLRAEIPARIRGRAGGYTSATPIVID 212

[Close]

BLAST of Moc05g02880 vs. ExPASy Swiss-Prot
Match: Q9LHY9 (B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0112300 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-15
Identity = 46/125 (36.80%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 25  SNKPFHGVILGKSHVAPAYLMSLPAKFHSVL--PAIVIHGVVYCGGKEWRVDYYGNRRGR 84
           +  PF   ++ KSH+ P + M +P +F   L  P      V++ GGK W   Y G+ + +
Sbjct: 51  AGNPFFTALIAKSHLHPKFQMWIPPRFQHRLAEPEARTAAVLHSGGKSWATSYCGHLKMK 110

Query: 85  TLDTRGWRKFVDENHLKYGDACVFELMEC-SSSMVKFRVQILRGDIPVQLHDKFRGESRD 144
            LD  GW +F  +N L  GDACVFEL+   ++  ++F+VQILRG +P ++    +G + D
Sbjct: 111 KLDA-GWSEFAVDNRLLVGDACVFELVAMGAAGGLEFQVQILRGGLPAEVVTS-KGLTSD 170

Query: 145 TPINI 147
            PI I
Sbjct: 171 QPILI 173

[Close]

BLAST of Moc05g02880 vs. ExPASy Swiss-Prot
Match: Q8RYD1 (B3 domain-containing protein REM16 OS=Arabidopsis thaliana OX=3702 GN=REM16 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.3e-05
Identity = 30/98 (30.61%), Postives = 48/98 (48.98%), Query Frame = 0


Query: 32  VILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGK---EWRVDYYGNRRGRTLDTRG 91
           V + +SHV     +++P K+      I    VV    +   E + + +G R    + T G
Sbjct: 225 VFMKRSHVVSKCFLTIPYKWCVKNMLITRQEVVMQVDQTKWEMKFNIFGARGSGGIST-G 284

Query: 92  WRKFVDENHLKYGDACVFELMECSSSMVKFRVQILRGD 127
           W+KFV +N+L+ GD CVFE     +  +   V I RG+
Sbjct: 285 WKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFRGE 321

[Close]

BLAST of Moc05g02880 vs. ExPASy Swiss-Prot
Match: Q8L3W1 (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-04
Identity = 34/97 (35.05%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 28  PFHGVILGKSHVAPAYLMSLPAKF-HSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDT 87
           PF  V+L  S++    +M LP+ F    L  I     V    K+W V     + GR   +
Sbjct: 242 PFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVRCL-YKAGRAKFS 301

Query: 88  RGWRKFVDENHLKYGDACVFELMECSSSMVK---FRV 121
           +GW +F  EN+L  GD CVFEL+     ++K   FRV
Sbjct: 302 QGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRV 337

[Close]

BLAST of Moc05g02880 vs. ExPASy Swiss-Prot
Match: Q6AV21 (B3 domain-containing protein Os03g0619800 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0619800 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-04
Identity = 32/84 (38.10%), Postives = 41/84 (48.81%), Query Frame = 0


Query: 29  FHGVILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGKEWRVDYYGNRR----GRTL 88
           F G+ L  S  A +Y   LP K H  L       V+ C G  W+++    RR     R  
Sbjct: 441 FRGLEL-SSRYAASY---LPDKNHQTL-------VLQCKGMIWQINLVVRRRYTKGKRWF 500

Query: 89  DTRGWRKFVDENHLKYGDACVFEL 109
            T GWRKF  +N L+ GD C+FEL
Sbjct: 501 LTAGWRKFAHDNRLRVGDFCLFEL 513

[Close]

BLAST of Moc05g02880 vs. ExPASy TrEMBL
Match: A0A6J1CYN6 (B3 domain-containing protein Os04g0386900-like OS=Momordica charantia OX=3673 GN=LOC111015996 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.0e-81
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI 60
           MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI
Sbjct: 1   MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI 60

Query: 61  HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV 120
           HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV
Sbjct: 61  HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV 120

Query: 121 QILRGDIPVQLHDKFRGESRDTPINID 148
           QILRGDIPVQLHDKFRGESRDTPINID
Sbjct: 121 QILRGDIPVQLHDKFRGESRDTPINID 147

[Close]

BLAST of Moc05g02880 vs. ExPASy TrEMBL
Match: A0A6J1D033 (B3 domain-containing protein Os04g0386900-like OS=Momordica charantia OX=3673 GN=LOC111016130 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 124/147 (84.35%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 1   MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI 60
           MQSQEKPPSE   MEPR  EIFPLS+KPFHGVIL KSHVAP Y M+LPAKFHSVLPAIVI
Sbjct: 1   MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVI 60

Query: 61  HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV 120
           HGV+YCGGKEW VDYYGNRRG++LDTR WRKFV++NHLK GDACVFELMECSSS +KFRV
Sbjct: 61  HGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKSGDACVFELMECSSSTLKFRV 120

Query: 121 QILRGDIPVQLHDKFRGESRDTPINID 148
           QILRGDIPVQLHDKF GES+DTPI ID
Sbjct: 121 QILRGDIPVQLHDKFSGESKDTPIKID 147

[Close]

BLAST of Moc05g02880 vs. ExPASy TrEMBL
Match: A0A6J1IDC2 (B3 domain-containing protein Os04g0386900-like OS=Cucurbita maxima OX=3661 GN=LOC111472772 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.1e-58
Identity = 108/147 (73.47%), Postives = 127/147 (86.39%), Query Frame = 0


Query: 1   MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI 60
           MQSQEKPP+EP EM+P+   I PLS KP+HGVIL KSHVAP   M LPAKFHSVLPAI+I
Sbjct: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMI 60

Query: 61  HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV 120
             V+YC GK+W++DYYGNRRG+ LDT+ WRKFV++NHLK GDACVFEL+ECSSS++KFRV
Sbjct: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVLKFRV 120

Query: 121 QILRGDIPVQLHDKFRGESRDTPINID 148
           QILRGDIP +LH+KF GESR+TPI ID
Sbjct: 121 QILRGDIPFELHEKFSGESRNTPILID 147

[Close]

BLAST of Moc05g02880 vs. ExPASy TrEMBL
Match: A0A6J1FTK2 (B3 domain-containing protein Os04g0386900-like OS=Cucurbita moschata OX=3662 GN=LOC111447171 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.1e-58
Identity = 108/147 (73.47%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 1   MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI 60
           MQSQEKPP EP EM+P+   I PLS KP+HGVIL KSHVAP   M LPAKFHSVLPAI+I
Sbjct: 1   MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMI 60

Query: 61  HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV 120
             V+YC GK+W++DYYGNRRG+ LDT+ WRKFV++NHLK GDACVFEL+ECSSS++KFRV
Sbjct: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120

Query: 121 QILRGDIPVQLHDKFRGESRDTPINID 148
           QILRGDIP +LH+KF GESR+TPI ID
Sbjct: 121 QILRGDIPFELHEKFSGESRNTPILID 147

[Close]

BLAST of Moc05g02880 vs. ExPASy TrEMBL
Match: A0A0A0L3V3 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126890 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.1e-50
Identity = 95/147 (64.63%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 1   MQSQEKPPSEPAEMEPRIDEIFPLSNKPFHGVILGKSHVAPAYLMSLPAKFHSVLPAIVI 60
           MQS  KPP+E   MEP+  E  PLS KP+H  IL KSHVAP Y + LPAKFHS+LPAIVI
Sbjct: 1   MQSARKPPTELPTMEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI 60

Query: 61  HGVVYCGGKEWRVDYYGNRRGRTLDTRGWRKFVDENHLKYGDACVFELMECSSSMVKFRV 120
             V+ C GK+W++DY+GNRRG+ LD++ WRKFV++N LK GDA VFEL+ECSSS++KFRV
Sbjct: 61  PAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFRV 120

Query: 121 QILRGDIPVQLHDKFRGESRDTPINID 148
           QIL GDIP++LHDKF GE+++TPI++D
Sbjct: 121 QILSGDIPLELHDKFSGETKETPIHLD 147

[Close]

BLAST of Moc05g02880 vs. TAIR 10
Match: AT4G33280.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.1e-06
Identity = 30/98 (30.61%), Postives = 48/98 (48.98%), Query Frame = 0


Query: 32  VILGKSHVAPAYLMSLPAKFHSVLPAIVIHGVVYCGGK---EWRVDYYGNRRGRTLDTRG 91
           V + +SHV     +++P K+      I    VV    +   E + + +G R    + T G
Sbjct: 225 VFMKRSHVVSKCFLTIPYKWCVKNMLITRQEVVMQVDQTKWEMKFNIFGARGSGGIST-G 284

Query: 92  WRKFVDENHLKYGDACVFELMECSSSMVKFRVQILRGD 127
           W+KFV +N+L+ GD CVFE     +  +   V I RG+
Sbjct: 285 WKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFRGE 321

[Close]

BLAST of Moc05g02880 vs. TAIR 10
Match: AT3G18990.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 47.8 bits (112), Expect = 9.0e-06
Identity = 34/97 (35.05%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 28  PFHGVILGKSHVAPAYLMSLPAKF-HSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDT 87
           PF  V+L  S++    +M LP+ F    L  I     V    K+W V     + GR   +
Sbjct: 242 PFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVRCL-YKAGRAKFS 301

Query: 88  RGWRKFVDENHLKYGDACVFELMECSSSMVK---FRV 121
           +GW +F  EN+L  GD CVFEL+     ++K   FRV
Sbjct: 302 QGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRV 337

[Close]

BLAST of Moc05g02880 vs. TAIR 10
Match: AT1G49480.1 (related to vernalization1 1 )

HSP 1 Score: 44.7 bits (104), Expect = 7.6e-05
Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 0


Query: 28  PFHGVILGKSHVAPAYLMSLPAKF-HSVLPAIVIHGVVYCGGKEWRVDYYGNRRGRTLDT 87
           P+  V+L  S++    +M LP+ F    L  I     +  G K+W V     + GR   +
Sbjct: 127 PYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVRCL-YKAGRAKFS 186

Query: 88  RGWRKFVDENHLKYGDACVFELM 110
           +GW +F  EN++  GD CVFEL+
Sbjct: 187 QGWYEFTLENNIGEGDVCVFELL 208

The following BLAST results are available for this feature:

BLAST of Moc05g02880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146910.1	6.1e-81	100.00	B3 domain-containing protein Os04g0386900-like [Momordica charantia] >XP_0221469...	[more]
XP_022147119.1	2.5e-66	84.35	B3 domain-containing protein Os04g0386900-like [Momordica charantia]	[more]
XP_022941967.1	4.3e-58	73.47	B3 domain-containing protein Os04g0386900-like [Cucurbita moschata] >XP_02294197...	[more]
XP_022974195.1	4.3e-58	73.47	B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022974196....	[more]
XP_023539026.1	4.3e-58	72.79	B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo] >KAG...	[more]

BLAST of Moc05g02880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XLP4	1.0e-17	35.57	B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q9LHY9	2.1e-15	36.80	B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q8RYD1	4.3e-05	30.61	B3 domain-containing protein REM16 OS=Arabidopsis thaliana OX=3702 GN=REM16 PE=2...	[more]
Q8L3W1	1.3e-04	35.05	B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q6AV21	1.7e-04	38.10	B3 domain-containing protein Os03g0619800 OS=Oryza sativa subsp. japonica OX=399...	[more]

BLAST of Moc05g02880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYN6	3.0e-81	100.00	B3 domain-containing protein Os04g0386900-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1D033	1.2e-66	84.35	B3 domain-containing protein Os04g0386900-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1IDC2	2.1e-58	73.47	B3 domain-containing protein Os04g0386900-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FTK2	2.1e-58	73.47	B3 domain-containing protein Os04g0386900-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0L3V3	2.1e-50	64.63	TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126890 PE=4 ...	[more]

BLAST of Moc05g02880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33280.1	3.1e-06	30.61	AP2/B3-like transcriptional factor family protein	[more]
AT3G18990.1	9.0e-06	35.05	AP2/B3-like transcriptional factor family protein	[more]
AT1G49480.1	7.6e-05	33.73	related to vernalization1 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 34..122 e-value: 0.0016 score: 26.9
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 67..118 e-value: 4.2E-13 score: 49.0
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 68..126 score: 11.970002
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 33..124 e-value: 1.03527E-16 score: 68.5085
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 13..126 e-value: 2.4E-19 score: 71.3
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 26..123
None	No IPR available	PANTHER	PTHR31391:SF64	B3 DOMAIN-CONTAINING PROTEIN OS04G0386900	coord: 9..139
IPR044837	B3 domain-containing protein REM16-like	PANTHER	PTHR31391	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	coord: 9..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g02880.1	Moc05g02880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding