Moc05g01810 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g01810
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Patatin
Location	chr5: 1168130 .. 1168450 (+)
RNA-Seq Expression	Moc05g01810
Synteny	Moc05g01810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACAACTTATTCATCATCTTCAGCAAAGCTCATTACTATTTTGAGCATCGATGGCGGCGGAATTCGAGGTCTCATTCCGGCCACCATTCTCAACTTCCTCGAATCAGAACTTCAGGTGAAATTGTTGTGTTGTTTATAAATAATTATCTCCCTTTTCTTTTTGACTTGTCTCATTCCTTTTTCTCCCTTGCAATTACTTTATTTTTTGATGTAGAAATTTGATGGCAAGGAGACAAGAATTGCAGATTACTTTGATGTGATCGCTGGAACGAGTGATGGTGGATTGGTGACAGCAATTGTTGACAGCACCGGATGA

mRNA sequence

ATGGATACAACTTATTCATCATCTTCAGCAAAGCTCATTACTATTTTGAGCATCGATGGCGGCGGAATTCGAGGTCTCATTCCGGCCACCATTCTCAACTTCCTCGAATCAGAACTTCAGAAATTTGATGGCAAGGAGACAAGAATTGCAGATTACTTTGATGTGATCGCTGGAACGAGTGATGGTGGATTGGTGACAGCAATTGTTGACAGCACCGGATGA

Coding sequence (CDS)

ATGGATACAACTTATTCATCATCTTCAGCAAAGCTCATTACTATTTTGAGCATCGATGGCGGCGGAATTCGAGGTCTCATTCCGGCCACCATTCTCAACTTCCTCGAATCAGAACTTCAGAAATTTGATGGCAAGGAGACAAGAATTGCAGATTACTTTGATGTGATCGCTGGAACGAGTGATGGTGGATTGGTGACAGCAATTGTTGACAGCACCGGATGA

Protein sequence

MDTTYSSSSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTAIVDSTG

Homology

[Close]

BLAST of Moc05g01810 vs. NCBI nr
Match: XP_021833077.1 (patatin-like protein 2 [Prunus avium])

HSP 1 Score: 103.6 bits (257), Expect = 7.4e-19
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 8  SSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTA 67
          S  K+ITILSIDGGGIRGLIPATILNFLESELQK DG++ RIADYFDV+AGTS GGLVTA
Sbjct: 12 SYGKMITILSIDGGGIRGLIPATILNFLESELQKLDGEDARIADYFDVVAGTSTGGLVTA 71

Query: 68 IV 70
          ++
Sbjct: 72 ML 73

[Close]

BLAST of Moc05g01810 vs. NCBI nr
Match: KAB2619367.1 (patatin-like protein 2 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 103.2 bits (256), Expect = 9.6e-19
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 7  SSSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVT 66
          ++S KLIT+LSIDGGGIRGLIPATIL FLESELQK DG++ RIADYFDVIAGTS GGLVT
Sbjct: 3  TTSRKLITVLSIDGGGIRGLIPATILGFLESELQKLDGEDARIADYFDVIAGTSTGGLVT 62

Query: 67 AIV 70
          A++
Sbjct: 63 AML 65

[Close]

BLAST of Moc05g01810 vs. NCBI nr
Match: XP_004152794.1 (patatin-like protein 2 [Cucumis sativus] >KGN62782.2 hypothetical protein Csa_022216 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 9.6e-19
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 12 LITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTAIVDS 71
          LITILSIDGGGIRG+IP TILNFLESELQK DGKE R+ADYFDVIAGTS GGLVTA++ +
Sbjct: 16 LITILSIDGGGIRGIIPGTILNFLESELQKLDGKEVRVADYFDVIAGTSTGGLVTAMISA 75

[Close]

BLAST of Moc05g01810 vs. NCBI nr
Match: KAB2619366.1 (patatin-like protein 2 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 103.2 bits (256), Expect = 9.6e-19
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 7  SSSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVT 66
          ++S KLIT+LSIDGGGIRGLIPATIL FLESELQK DG++ RIADYFDVIAGTS GGLVT
Sbjct: 3  TTSRKLITVLSIDGGGIRGLIPATILGFLESELQKLDGEDARIADYFDVIAGTSTGGLVT 62

Query: 67 AIV 70
          A++
Sbjct: 63 AML 65

[Close]

BLAST of Moc05g01810 vs. NCBI nr
Match: TQD72148.1 (hypothetical protein C1H46_042321 [Malus baccata])

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-18
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 8  SSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTA 67
          +S KLIT+LSIDGGGIRGLIPATIL FLESELQK DG++ RIADYFDVIAGTS GGLVTA
Sbjct: 4  TSRKLITVLSIDGGGIRGLIPATILGFLESELQKLDGEDARIADYFDVIAGTSTGGLVTA 63

Query: 68 IV 70
          ++
Sbjct: 64 ML 65

[Close]

BLAST of Moc05g01810 vs. ExPASy Swiss-Prot
Match: O48723 (Patatin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=PLP2 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.3e-20
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 12 LITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTAIV 70
          L+TILSIDGGGIRGLIPA IL FLESELQK DG+E R+ADYFDVIAGTS GGLVTA++
Sbjct: 18 LVTILSIDGGGIRGLIPAVILGFLESELQKLDGEEARLADYFDVIAGTSTGGLVTAML 75

[Close]

BLAST of Moc05g01810 vs. ExPASy Swiss-Prot
Match: A2YW91 (Patatin-like protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=PLP2 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.4e-19
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 6  SSSSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLV 65
          S    K++T+LSIDGGG+RG+IPATIL FLE ELQK DG + RIADYFDV+AGTS GGL+
Sbjct: 14 SPEKVKMVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLL 73

Query: 66 TAIV 70
          TA++
Sbjct: 74 TAML 77

[Close]

BLAST of Moc05g01810 vs. ExPASy Swiss-Prot
Match: Q6ZJD3 (Patatin-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PLP2 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.4e-19
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 6  SSSSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLV 65
          S    K++T+LSIDGGG+RG+IPATIL FLE ELQK DG + RIADYFDV+AGTS GGL+
Sbjct: 14 SPEKVKMVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLL 73

Query: 66 TAIV 70
          TA++
Sbjct: 74 TAML 77

[Close]

BLAST of Moc05g01810 vs. ExPASy Swiss-Prot
Match: O23181 (Patatin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=PLP3 PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-17
Identity = 41/62 (66.13%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 8  SSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTA 67
          S  +L+TILSIDGGGIRG+IP TIL +LES+LQ+ DG+E R+ DYFDVI+GTS GGL+ A
Sbjct: 30 SYGQLVTILSIDGGGIRGIIPGTILAYLESQLQELDGEEARLVDYFDVISGTSTGGLIVA 89

Query: 68 IV 70
          ++
Sbjct: 90 ML 91

[Close]

BLAST of Moc05g01810 vs. ExPASy Swiss-Prot
Match: O23179 (Patatin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PLP1 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 4.2e-17
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 8  SSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTA 67
          S   L+TILS+DGGG+RG+I   IL FLE +LQ+ DG+E R+ADYFDVIAGTS GGLVTA
Sbjct: 14 SCGSLVTILSLDGGGVRGIIAGVILAFLEKQLQELDGEEARLADYFDVIAGTSTGGLVTA 73

Query: 68 IV---DSTG 74
          ++   D TG
Sbjct: 74 MLTVPDETG 82

[Close]

BLAST of Moc05g01810 vs. ExPASy TrEMBL
Match: A0A6P5U159 (Patatin OS=Prunus avium OX=42229 GN=LOC110772898 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.6e-19
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 8  SSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTA 67
          S  K+ITILSIDGGGIRGLIPATILNFLESELQK DG++ RIADYFDV+AGTS GGLVTA
Sbjct: 12 SYGKMITILSIDGGGIRGLIPATILNFLESELQKLDGEDARIADYFDVVAGTSTGGLVTA 71

Query: 68 IV 70
          ++
Sbjct: 72 ML 73

[Close]

BLAST of Moc05g01810 vs. ExPASy TrEMBL
Match: A0A5N5GW46 (Patatin OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_015236 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.7e-19
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 7  SSSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVT 66
          ++S KLIT+LSIDGGGIRGLIPATIL FLESELQK DG++ RIADYFDVIAGTS GGLVT
Sbjct: 3  TTSRKLITVLSIDGGGIRGLIPATILGFLESELQKLDGEDARIADYFDVIAGTSTGGLVT 62

Query: 67 AIV 70
          A++
Sbjct: 63 AML 65

[Close]

BLAST of Moc05g01810 vs. ExPASy TrEMBL
Match: A0A5N5GUT2 (Patatin OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_015235 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.7e-19
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 7  SSSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVT 66
          ++S KLIT+LSIDGGGIRGLIPATIL FLESELQK DG++ RIADYFDVIAGTS GGLVT
Sbjct: 3  TTSRKLITVLSIDGGGIRGLIPATILGFLESELQKLDGEDARIADYFDVIAGTSTGGLVT 62

Query: 67 AIV 70
          A++
Sbjct: 63 AML 65

[Close]

BLAST of Moc05g01810 vs. ExPASy TrEMBL
Match: A0A498HR33 (Patatin OS=Malus domestica OX=3750 GN=DVH24_012428 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.1e-19
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 8   SSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTA 67
           +S KLIT+LSIDGGGIRGLIPATIL FLESELQK DG++ RIADYFDVIAGTS GGLVTA
Sbjct: 69  TSRKLITVLSIDGGGIRGLIPATILGFLESELQKLDGEDARIADYFDVIAGTSTGGLVTA 128

Query: 68  IV 70
           ++
Sbjct: 129 ML 130

[Close]

BLAST of Moc05g01810 vs. ExPASy TrEMBL
Match: A0A540KD37 (Patatin OS=Malus baccata OX=106549 GN=C1H46_042321 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.1e-19
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 8  SSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTA 67
          +S KLIT+LSIDGGGIRGLIPATIL FLESELQK DG++ RIADYFDVIAGTS GGLVTA
Sbjct: 4  TSRKLITVLSIDGGGIRGLIPATILGFLESELQKLDGEDARIADYFDVIAGTSTGGLVTA 63

Query: 68 IV 70
          ++
Sbjct: 64 ML 65

[Close]

BLAST of Moc05g01810 vs. TAIR 10
Match: AT2G26560.1 (phospholipase A 2A )

HSP 1 Score: 97.8 bits (242), Expect = 3.8e-21
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 12 LITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTAIV 70
          L+TILSIDGGGIRGLIPA IL FLESELQK DG+E R+ADYFDVIAGTS GGLVTA++
Sbjct: 18 LVTILSIDGGGIRGLIPAVILGFLESELQKLDGEEARLADYFDVIAGTSTGGLVTAML 75

[Close]

BLAST of Moc05g01810 vs. TAIR 10
Match: AT4G37050.1 (PATATIN-like protein 4 )

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-18
Identity = 41/62 (66.13%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 8  SSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTA 67
          S  +L+TILSIDGGGIRG+IP TIL +LES+LQ+ DG+E R+ DYFDVI+GTS GGL+ A
Sbjct: 30 SYGQLVTILSIDGGGIRGIIPGTILAYLESQLQELDGEEARLVDYFDVISGTSTGGLIVA 89

Query: 68 IV 70
          ++
Sbjct: 90 ML 91

[Close]

BLAST of Moc05g01810 vs. TAIR 10
Match: AT4G37070.2 (Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein )

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-18
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 8  SSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTA 67
          S   L+TILS+DGGG+RG+I   IL FLE +LQ+ DG+E R+ADYFDVIAGTS GGLVTA
Sbjct: 14 SCGSLVTILSLDGGGVRGIIAGVILAFLEKQLQELDGEEARLADYFDVIAGTSTGGLVTA 73

Query: 68 IV---DSTG 74
          ++   D TG
Sbjct: 74 MLTVPDETG 82

[Close]

BLAST of Moc05g01810 vs. TAIR 10
Match: AT4G37070.3 (Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein )

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-18
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 8  SSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTA 67
          S   L+TILS+DGGG+RG+I   IL FLE +LQ+ DG+E R+ADYFDVIAGTS GGLVTA
Sbjct: 14 SCGSLVTILSLDGGGVRGIIAGVILAFLEKQLQELDGEEARLADYFDVIAGTSTGGLVTA 73

Query: 68 IV---DSTG 74
          ++   D TG
Sbjct: 74 MLTVPDETG 82

[Close]

BLAST of Moc05g01810 vs. TAIR 10
Match: AT4G37070.1 (Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein )

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-18
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 8  SSAKLITILSIDGGGIRGLIPATILNFLESELQKFDGKETRIADYFDVIAGTSDGGLVTA 67
          S   L+TILS+DGGG+RG+I   IL FLE +LQ+ DG+E R+ADYFDVIAGTS GGLVTA
Sbjct: 14 SCGSLVTILSLDGGGVRGIIAGVILAFLEKQLQELDGEEARLADYFDVIAGTSTGGLVTA 73

Query: 68 IV---DSTG 74
          ++   D TG
Sbjct: 74 MLTVPDETG 82

The following BLAST results are available for this feature:

BLAST of Moc05g01810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021833077.1	7.4e-19	82.26	patatin-like protein 2 [Prunus avium]	[more]
KAB2619367.1	9.6e-19	80.95	patatin-like protein 2 [Pyrus ussuriensis x Pyrus communis]	[more]
XP_004152794.1	9.6e-19	83.33	patatin-like protein 2 [Cucumis sativus] >KGN62782.2 hypothetical protein Csa_02...	[more]
KAB2619366.1	9.6e-19	80.95	patatin-like protein 2 [Pyrus ussuriensis x Pyrus communis]	[more]
TQD72148.1	1.3e-18	82.26	hypothetical protein C1H46_042321 [Malus baccata]	[more]

BLAST of Moc05g01810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48723	5.3e-20	82.76	Patatin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=PLP2 PE=1 SV=1	[more]
A2YW91	3.4e-19	68.75	Patatin-like protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=PLP2 PE=3 SV=1	[more]
Q6ZJD3	3.4e-19	68.75	Patatin-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PLP2 PE=3 SV=...	[more]
O23181	2.5e-17	66.13	Patatin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=PLP3 PE=2 SV=2	[more]
O23179	4.2e-17	63.77	Patatin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PLP1 PE=1 SV=2	[more]

BLAST of Moc05g01810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5U159	3.6e-19	82.26	Patatin OS=Prunus avium OX=42229 GN=LOC110772898 PE=3 SV=1	[more]
A0A5N5GW46	4.7e-19	80.95	Patatin OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_015236 PE=3 SV...	[more]
A0A5N5GUT2	4.7e-19	80.95	Patatin OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_015235 PE=3 SV...	[more]
A0A498HR33	6.1e-19	82.26	Patatin OS=Malus domestica OX=3750 GN=DVH24_012428 PE=3 SV=1	[more]
A0A540KD37	6.1e-19	82.26	Patatin OS=Malus baccata OX=106549 GN=C1H46_042321 PE=3 SV=1	[more]

BLAST of Moc05g01810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26560.1	3.8e-21	82.76	phospholipase A 2A	[more]
AT4G37050.1	1.7e-18	66.13	PATATIN-like protein 4	[more]
AT4G37070.2	3.0e-18	63.77	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein	[more]
AT4G37070.3	3.0e-18	63.77	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein	[more]
AT4G37070.1	3.0e-18	63.77	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002641	Patatin-like phospholipase domain	PFAM	PF01734	Patatin	coord: 16..68 e-value: 4.4E-8 score: 33.6
IPR002641	Patatin-like phospholipase domain	PROSITE	PS51635	PNPLA	coord: 16..73 score: 16.03088
None	No IPR available	GENE3D	3.40.1090.10	Cytosolic phospholipase A2 catalytic domain	coord: 2..72 e-value: 3.9E-22 score: 80.9
None	No IPR available	PANTHER	PTHR32176:SF69	PATATIN	coord: 9..71
None	No IPR available	PANTHER	PTHR32176	XYLOSE ISOMERASE	coord: 9..71
IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	SUPERFAMILY	52151	FabD/lysophospholipase-like	coord: 13..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g01810.1	Moc05g01810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016042	lipid catabolic process
biological_process	GO:0006629	lipid metabolic process
cellular_component	GO:0005773	vacuole
molecular_function	GO:0016298	lipase activity
molecular_function	GO:0045735	nutrient reservoir activity