Moc05g01200 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g01200
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Acidic leucine-rich nuclear phosphoprotein 32-related protein 2
Location	chr5: 781245 .. 782254 (-)
RNA-Seq Expression	Moc05g01200
Synteny	Moc05g01200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGCGATTCTAAGGACGTTAATGGCTGCCAAGAGAAGCCCGTGGATTCTGTCGCCGCCGGAGAAGTTGGGGATCACAGTAATGGAGAAGATTACAGCGAATCGAATGCCCTATTGCCGCCGCGCCGCGGTGGAATGTCGCGGAAATCGGACAAGCCGAGGATGAAAGTCCGGTGGAACGATAGTAATGGCAATAACCTAGCGGAGATTTTGGAGTTTCAACCGAGGTAGATTGGTTTTTCTCTGGTTTTCTGGTCTGTTTTATGTTATTTGGGGAAGATGAGCTTTCTGTTCTTGGTCTCATTTTTACAATCTGCTGCCTGTTTTCTCTTTACTCTTCAGCATTAGATCTAAAATGGGACATTGATCAGTTGCTGTTAATAGTTGAGATGTTGAAGAAGCTAAAATCTTCCTCACCACTGAATTTGAAACTTCAGTCCAACTCATTTTACTGTTCTTTTAGAAAGTCTGCTGTAATGCTGTCATATTAGTAGAACTGGTCTGTTCATCTGGTTTTTCTAGTACATCTAGATTGGTTTGTTAGCACAACGATCCTTCCTTATCTCATGCCTTATATCGACTGATACGCAAAAGTTAACAGATTCTTTTAAACTAGATGAATTCTGATTTTGGATGTGATGATGTTGTTGGGGACTGCAGATTTGTGTTTTTTGAACCCGTCTCTCTGTCTGTTTCTGCAGCGATGTGAGCGACTCCGGGGACGAGGAGGCCGATTCTTGCAGCTGTATAATTATGTAGATTATTACATCAAATATATTAGTGCATAATGACAAGAACCATGTGGTTGCTTTAAGACTAAACTGATAGTGTCATTAATTCTACTTTCTCTTGGTGGTGTTTCTGACTGTATACCGGATTGCTTTGATGCTACAACGACCTACAGAGAAGTTCAAAGATCGGTTGATTACTATGCCATCATCTCATTGTCCCTTGTGCCGCTGATGTGTCCCGGTGACACCTTGTACTGTTTCGGTCTTCAAATTTGA

mRNA sequence

ATGGATGGCGATTCTAAGGACGTTAATGGCTGCCAAGAGAAGCCCGTGGATTCTGTCGCCGCCGGAGAAGTTGGGGATCACAGTAATGGAGAAGATTACAGCGAATCGAATGCCCTATTGCCGCCGCGCCGCGGTGGAATGTCGCGGAAATCGGACAAGCCGAGGATGAAAGTCCGGTGGAACGATAGTAATGGCAATAACCTAGCGGAGATTTTGGAGTTTCAACCGAGCGATGTGAGCGACTCCGGGGACGAGGAGGCCGATTCTTGCAGCTTGTCATTAATTCTACTTTCTCTTGGTGGTGTTTCTGACTGTATACCGGATTGCTTTGATGCTACAACGACCTACAGAGAAGTTCAAAGATCGGTTGATTACTATGCCATCATCTCATTGTCCCTTGTGCCGCTGATGTGTCCCGGTGACACCTTGTACTGTTTCGGTCTTCAAATTTGA

Coding sequence (CDS)

ATGGATGGCGATTCTAAGGACGTTAATGGCTGCCAAGAGAAGCCCGTGGATTCTGTCGCCGCCGGAGAAGTTGGGGATCACAGTAATGGAGAAGATTACAGCGAATCGAATGCCCTATTGCCGCCGCGCCGCGGTGGAATGTCGCGGAAATCGGACAAGCCGAGGATGAAAGTCCGGTGGAACGATAGTAATGGCAATAACCTAGCGGAGATTTTGGAGTTTCAACCGAGCGATGTGAGCGACTCCGGGGACGAGGAGGCCGATTCTTGCAGCTTGTCATTAATTCTACTTTCTCTTGGTGGTGTTTCTGACTGTATACCGGATTGCTTTGATGCTACAACGACCTACAGAGAAGTTCAAAGATCGGTTGATTACTATGCCATCATCTCATTGTCCCTTGTGCCGCTGATGTGTCCCGGTGACACCTTGTACTGTTTCGGTCTTCAAATTTGA

Protein sequence

MDGDSKDVNGCQEKPVDSVAAGEVGDHSNGEDYSESNALLPPRRGGMSRKSDKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSLSLILLSLGGVSDCIPDCFDATTTYREVQRSVDYYAIISLSLVPLMCPGDTLYCFGLQI

Homology

[Close]

BLAST of Moc05g01200 vs. NCBI nr
Match: XP_008438475.1 (PREDICTED: uncharacterized protein LOC103483558 isoform X2 [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 2.2e-41
Identity = 94/123 (76.42%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 1   MDGDSKDVNGCQEKPVDSVAAGEVGDHSNGEDYSESNALLPPRRGGMSRKSDKPRMKVRW 60
           MDGDSKDVNGC+EK +DS AAGEVGDHSNGE+YSESNALLPPRRGGMSRK +KPRMKVRW
Sbjct: 1   MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61  NDSNGNNLAEILEFQPSDVSDSGDEEADSCSLSLILLSLGGVSDCIPDCFDATTTYREVQ 120
           NDSNGNNLAEILEFQPSDVSDSGDEEADSCS                 C   TTT R+VQ
Sbjct: 61  NDSNGNNLAEILEFQPSDVSDSGDEEADSCSY----------------CCATTTTARDVQ 107

Query: 121 RSV 124
           RSV
Sbjct: 121 RSV 107

[Close]

BLAST of Moc05g01200 vs. NCBI nr
Match: KAA0049218.1 (uncharacterized protein E6C27_scaffold171G004580 [Cucumis melo var. makuwa] >TYK17340.1 uncharacterized protein E5676_scaffold434G001950 [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 2.2e-41
Identity = 94/123 (76.42%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 1   MDGDSKDVNGCQEKPVDSVAAGEVGDHSNGEDYSESNALLPPRRGGMSRKSDKPRMKVRW 60
           MDGDSKDVNGC+EK +DS AAGEVGDHSNGE+YSESNALLPPRRGGMSRK +KPRMKVRW
Sbjct: 1   MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61  NDSNGNNLAEILEFQPSDVSDSGDEEADSCSLSLILLSLGGVSDCIPDCFDATTTYREVQ 120
           NDSNGNNLAEILEFQPSDVSDSGDEEADSCS                 C   TTT R+VQ
Sbjct: 61  NDSNGNNLAEILEFQPSDVSDSGDEEADSCSY----------------CCATTTTARDVQ 107

Query: 121 RSV 124
           RSV
Sbjct: 121 RSV 107

[Close]

BLAST of Moc05g01200 vs. NCBI nr
Match: XP_038897861.1 (uncharacterized protein LOC120085750 [Benincasa hispida])

HSP 1 Score: 169.9 bits (429), Expect = 1.7e-38
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MDGDSKDVNGCQEKPVDSVAAGEVGDHSNGEDYSESNALLPPRRGGMSRKSDKPRMKVRW 60
          MDGDSKDVNGC+EK +DS A GEVGDHSNGE+YSESNALLPPRRGGMSRKS+KPRMKVRW
Sbjct: 1  MDGDSKDVNGCKEKIMDSAATGEVGDHSNGEEYSESNALLPPRRGGMSRKSNKPRMKVRW 60

Query: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCS 92
          NDSNGNNLAEILEFQPSDVSDSGDEE DSCS
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEETDSCS 91

[Close]

BLAST of Moc05g01200 vs. NCBI nr
Match: XP_004134046.1 (uncharacterized protein LOC101205158 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-37
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 3  GDSKDVNGCQEKPVDSVAAGEVGDHSNGEDYSESNALLPPRRGGMSRKSDKPRMKVRWND 62
          GDSKDVNGC+EK +DS AAGEVGDHSNGE+YSESNALLPPRRGGMSRK +KPRMKVRWND
Sbjct: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63

Query: 63 SNGNNLAEILEFQPSDVSDSGDEEADSCS 92
          SNGNNLAEILEFQPSDVSDSGDEEADSCS
Sbjct: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCS 92

[Close]

BLAST of Moc05g01200 vs. NCBI nr
Match: KAG6582410.1 (hypothetical protein SDJN03_22412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-34
Identity = 79/95 (83.16%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1   MDGDSKDVNGCQEKPVDSVAAGEVGDHSNGEDYSESNALLPPRRGGMSRKSDKPRMKVRW 60
           M GDS+ VNG  E+ VDS AAGEVGDH NGED SESNALLPPRRGGMSRKS+KPRMKVRW
Sbjct: 58  MGGDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 117

Query: 61  NDSNGNNLAEILEFQPSDVSDSGDEEADSCSLSLI 96
           NDSNGNNLAEILEFQPSDVSDSGDEE+DSCS  ++
Sbjct: 118 NDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 152

[Close]

BLAST of Moc05g01200 vs. ExPASy TrEMBL
Match: A0A5A7U1V8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001950 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.1e-41
Identity = 94/123 (76.42%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 1   MDGDSKDVNGCQEKPVDSVAAGEVGDHSNGEDYSESNALLPPRRGGMSRKSDKPRMKVRW 60
           MDGDSKDVNGC+EK +DS AAGEVGDHSNGE+YSESNALLPPRRGGMSRK +KPRMKVRW
Sbjct: 1   MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61  NDSNGNNLAEILEFQPSDVSDSGDEEADSCSLSLILLSLGGVSDCIPDCFDATTTYREVQ 120
           NDSNGNNLAEILEFQPSDVSDSGDEEADSCS                 C   TTT R+VQ
Sbjct: 61  NDSNGNNLAEILEFQPSDVSDSGDEEADSCSY----------------CCATTTTARDVQ 107

Query: 121 RSV 124
           RSV
Sbjct: 121 RSV 107

[Close]

BLAST of Moc05g01200 vs. ExPASy TrEMBL
Match: A0A1S3AX40 (uncharacterized protein LOC103483558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483558 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.1e-41
Identity = 94/123 (76.42%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 1   MDGDSKDVNGCQEKPVDSVAAGEVGDHSNGEDYSESNALLPPRRGGMSRKSDKPRMKVRW 60
           MDGDSKDVNGC+EK +DS AAGEVGDHSNGE+YSESNALLPPRRGGMSRK +KPRMKVRW
Sbjct: 1   MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61  NDSNGNNLAEILEFQPSDVSDSGDEEADSCSLSLILLSLGGVSDCIPDCFDATTTYREVQ 120
           NDSNGNNLAEILEFQPSDVSDSGDEEADSCS                 C   TTT R+VQ
Sbjct: 61  NDSNGNNLAEILEFQPSDVSDSGDEEADSCSY----------------CCATTTTARDVQ 107

Query: 121 RSV 124
           RSV
Sbjct: 121 RSV 107

[Close]

BLAST of Moc05g01200 vs. ExPASy TrEMBL
Match: A0A0A0L701 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134730 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.4e-38
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 3  GDSKDVNGCQEKPVDSVAAGEVGDHSNGEDYSESNALLPPRRGGMSRKSDKPRMKVRWND 62
          GDSKDVNGC+EK +DS AAGEVGDHSNGE+YSESNALLPPRRGGMSRK +KPRMKVRWND
Sbjct: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63

Query: 63 SNGNNLAEILEFQPSDVSDSGDEEADSCS 92
          SNGNNLAEILEFQPSDVSDSGDEEADSCS
Sbjct: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCS 92

[Close]

BLAST of Moc05g01200 vs. ExPASy TrEMBL
Match: A0A6J1EBY1 (uncharacterized protein LOC111431793 OS=Cucurbita moschata OX=3662 GN=LOC111431793 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 5.6e-35
Identity = 79/95 (83.16%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MDGDSKDVNGCQEKPVDSVAAGEVGDHSNGEDYSESNALLPPRRGGMSRKSDKPRMKVRW 60
          M GDS+ VNG  E+ VDS AAGEVGDH NGED SESNALLPPRRGGMSRKS+KPRMKVRW
Sbjct: 1  MGGDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60

Query: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCSLSLI 96
          NDSNGNNLAEILEFQPSDVSDSGDEE+DSCS  ++
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 95

[Close]

BLAST of Moc05g01200 vs. ExPASy TrEMBL
Match: A0A6J1INK9 (uncharacterized protein LOC111479120 OS=Cucurbita maxima OX=3661 GN=LOC111479120 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.8e-34
Identity = 78/95 (82.11%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1   MDGDSKDVNGCQEKPVDSVAAGEVGDHSNGEDYSESNALLPPRRGGMSRKSDKPRMKVRW 60
           M GDS+ VNG  E+ VDS AAGEVGDH N ED SESNALLPPRRGGMSRKS+KPRMKVRW
Sbjct: 20  MGGDSRAVNGYDERSVDSAAAGEVGDHRNSEDDSESNALLPPRRGGMSRKSNKPRMKVRW 79

Query: 61  NDSNGNNLAEILEFQPSDVSDSGDEEADSCSLSLI 96
           NDSNGNNLAEILEFQPSDVSDSGDEE+DSCS  ++
Sbjct: 80  NDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 114

[Close]

BLAST of Moc05g01200 vs. TAIR 10
Match: AT2G33390.1 (unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-20
Identity = 44/93 (47.31%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 3  GDSKDVNGCQEKPVDSVAAGEVGDHSNGEDYSESNALLPPRRGGMSRKSDKPRMKVRWND 62
          G+ K+ NGC+ K + S+ + E+ D    E+ SES  LLPPR+GGMSR +DK +  V+WND
Sbjct: 6  GEGKEANGCENKAIVSLNSSEIEDQIFEEEESESQCLLPPRKGGMSRSTDKIKRTVQWND 65

Query: 63 SNGNNLAEILEFQPSDVSDSGDEEADSCSLSLI 96
            G+NLAE+L ++PS+VSD+ D+++DSC  +++
Sbjct: 66 IKGDNLAEVLVYEPSEVSDTEDDDSDSCICTIM 98

The following BLAST results are available for this feature:

BLAST of Moc05g01200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438475.1	2.2e-41	76.42	PREDICTED: uncharacterized protein LOC103483558 isoform X2 [Cucumis melo]	[more]
KAA0049218.1	2.2e-41	76.42	uncharacterized protein E6C27_scaffold171G004580 [Cucumis melo var. makuwa] >TYK...	[more]
XP_038897861.1	1.7e-38	91.21	uncharacterized protein LOC120085750 [Benincasa hispida]	[more]
XP_004134046.1	1.1e-37	92.13	uncharacterized protein LOC101205158 [Cucumis sativus]	[more]
KAG6582410.1	1.2e-34	83.16	hypothetical protein SDJN03_22412, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Moc05g01200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g01200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1V8	1.1e-41	76.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AX40	1.1e-41	76.42	uncharacterized protein LOC103483558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0L701	5.4e-38	92.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134730 PE=4 SV=1	[more]
A0A6J1EBY1	5.6e-35	83.16	uncharacterized protein LOC111431793 OS=Cucurbita moschata OX=3662 GN=LOC1114317...	[more]
A0A6J1INK9	2.8e-34	82.11	uncharacterized protein LOC111479120 OS=Cucurbita maxima OX=3661 GN=LOC111479120...	[more]

BLAST of Moc05g01200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33390.1	3.8e-20	47.31	unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	PANTHER	PTHR33401	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTIC	coord: 4..90
None	No IPR available	PANTHER	PTHR33401:SF2	OS03G0138400 PROTEIN	coord: 4..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g01200.1	Moc05g01200.1	mRNA