Moc05g01130 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g01130
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description50S ribosomal protein L28
Locationchr5: 741216 .. 741983 (-)
RNA-Seq ExpressionMoc05g01130
SyntenyMoc05g01130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTTCCGTTGTGTTAGGACTGTCGCCGGGGAATACCTCCGGTGTCATGGCAGCGTCGTCGACTAGACTTCACTTCAGAACTAAACTAAATTCCGAGTTAGGGTTTCTCACTTCTCAATTGGGTGGCATCAAAATCTCCTCCAACAACTCGCCGATCCCTTCCGCACCCATTTCTGCTCCTCTCAGACCCGCACTTCAACCCGTTGCTCGTAATCTCCTCTTTTCAACTCTTGTTTAATATTATGCTTTCTGGTATTTGGTCATTCGACCCCTATATCTGCTCTAATTGTATGGCTGAAAATGCAATTTGATCGGAAGCAGCTGGGTGTTTATTCTCATTCTTAATCTGAACCCTTTTATATTTGTATTAGGGATCGAAATCGCCCGATTCTGATTCCATTTGGCTATCTAAAATTGCTATACTAGTCACTGTTTAACTATTGGCTTTGAAATGTTGATTGATGGCTGCTTTCTTTGAATGGTGGGAATGGGAACTATCTCAAACTTGGTTCCGTTATTTGGTTTTTCAGGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAAAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTGTGGTGGGAAGCTGGGAAGCGTTTTGTAAAACTACGATTATCAACAAAGGCTTTGAAGACCATTGAGAAAAATGGACTTGATGCTGTTGCTAAGAAGGCCGGAATTGATCTTCGCAAGGAATGA

mRNA sequence

ATGGCAGCTTCCGTTGTGTTAGGACTGTCGCCGGGGAATACCTCCGGTGTCATGGCAGCGTCGTCGACTAGACTTCACTTCAGAACTAAACTAAATTCCGAGTTAGGGTTTCTCACTTCTCAATTGGGTGGCATCAAAATCTCCTCCAACAACTCGCCGATCCCTTCCGCACCCATTTCTGCTCCTCTCAGACCCGCACTTCAACCCGTTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAAAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTGTGGTGGGAAGCTGGGAAGCGTTTTGTAAAACTACGATTATCAACAAAGGCTTTGAAGACCATTGAGAAAAATGGACTTGATGCTGTTGCTAAGAAGGCCGGAATTGATCTTCGCAAGGAATGA

Coding sequence (CDS)

ATGGCAGCTTCCGTTGTGTTAGGACTGTCGCCGGGGAATACCTCCGGTGTCATGGCAGCGTCGTCGACTAGACTTCACTTCAGAACTAAACTAAATTCCGAGTTAGGGTTTCTCACTTCTCAATTGGGTGGCATCAAAATCTCCTCCAACAACTCGCCGATCCCTTCCGCACCCATTTCTGCTCCTCTCAGACCCGCACTTCAACCCGTTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAAAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTGTGGTGGGAAGCTGGGAAGCGTTTTGTAAAACTACGATTATCAACAAAGGCTTTGAAGACCATTGAGAAAAATGGACTTGATGCTGTTGCTAAGAAGGCCGGAATTGATCTTCGCAAGGAATGA

Protein sequence

MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Homology
[Close]
BLAST of Moc05g01130 vs. NCBI nr
Match: XP_022145908.1 (50S ribosomal protein L28, chloroplastic [Momordica charantia])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS
Sbjct: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of Moc05g01130 vs. NCBI nr
Match: XP_038885053.1 (50S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida])

HSP 1 Score: 248.4 bits (633), Expect = 3.8e-62
Identity = 132/148 (89.19%), Postives = 137/148 (92.57%), Query Frame = 0 

Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MAA VVLG +P  +SGVMAASST+L F TK NSELGFLTSQL GIKISSN+S I  +PIS
Sbjct: 1   MAAFVVLGFTPATSSGVMAASSTKLQFTTKPNSELGFLTSQLAGIKISSNHSLISPSPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of Moc05g01130 vs. NCBI nr
Match: XP_022979375.1 (50S ribosomal protein L28, chloroplastic [Cucurbita maxima])

HSP 1 Score: 247.3 bits (630), Expect = 8.4e-62
Identity = 130/148 (87.84%), Postives = 138/148 (93.24%), Query Frame = 0 

Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MA S VLG +P ++SGVMAASS++LHFRTK N ELGFL+SQL GIKISSN+S I  +PIS
Sbjct: 1   MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of Moc05g01130 vs. NCBI nr
Match: XP_023526300.1 (50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 130/148 (87.84%), Postives = 138/148 (93.24%), Query Frame = 0 

Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MA S VLG +P  +SGVMAASS++LHFRTK N ELGFL+SQL GIKISSN+S I S+PIS
Sbjct: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISSSPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKAN+KNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANRKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of Moc05g01130 vs. NCBI nr
Match: KAG7018806.1 (50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.7 bits (626), Expect = 2.4e-61
Identity = 129/148 (87.16%), Postives = 138/148 (93.24%), Query Frame = 0 

Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MA S VLG +P  +SGVMAASS++LHFR+K N ELGFL+SQL GIKISSN+S I ++PIS
Sbjct: 39  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS 98

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 99  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 158

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 159 LSTKALKTIEKNGLDAVAKKAGIDLRKE 186

[Close]
BLAST of Moc05g01130 vs. ExPASy Swiss-Prot
Match: P82245 (50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 PE=1 SV=2)

HSP 1 Score: 189.5 bits (480), Expect = 2.7e-47
Identity = 109/149 (73.15%), Postives = 120/149 (80.54%), Query Frame = 0 

Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKIS-SNNSPIPSAPI 60
           MAAS +L  +P N        S  L  +  + SELGFLTSQL GI+IS S   PI S PI
Sbjct: 1   MAASGMLISNPSNVCFRKPQFSCSLKPKATV-SELGFLTSQLSGIQISPSPLFPIISKPI 60

Query: 61  SAPLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKL 120
           SAPL+P+LQPVARR+CPFTGKK+NK N VS SNHKTK+LQFVNLQYK+VWWEAGKRFVKL
Sbjct: 61  SAPLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKL 120

Query: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           RLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 RLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of Moc05g01130 vs. ExPASy Swiss-Prot
Match: P30956 (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.7e-46
Identity = 91/121 (75.21%), Postives = 108/121 (89.26%), Query Frame = 0 

Query: 28  RTKLNSELGFLTSQLGGIKISSNNSPIPSAPISAPLRPALQPVARRVCPFTGKKANKKNL 87
           ++KL+SEL F+TSQL G+KISS +    SAP+S P +P+LQPVARR+CPFTGKK+N+ N 
Sbjct: 31  QSKLSSELSFVTSQLSGLKISSTHFISSSAPLSVPFKPSLQPVARRICPFTGKKSNRANK 90

Query: 88  VSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 147
           VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+KTIEKNGLDAVAKKAGIDL K
Sbjct: 91  VSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSK 150

Query: 148 E 149
           +
Sbjct: 151 K 151

[Close]
BLAST of Moc05g01130 vs. ExPASy Swiss-Prot
Match: O22795 (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL28 PE=2 SV=2)

HSP 1 Score: 174.5 bits (441), Expect = 9.0e-43
Identity = 95/132 (71.97%), Postives = 108/132 (81.82%), Query Frame = 0 

Query: 18  MAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPISAPLRPALQP-VARRVCP 77
           M +S+  +   T  + ELGFLTSQL G++IS   S + +  IS P  P +QP VARR+CP
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVINR-ISLPSFPGIQPIVARRICP 72

Query: 78  FTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDA 137
           FTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDA
Sbjct: 73  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 132

Query: 138 VAKKAGIDLRKE 149
           VAKKAGIDLRK+
Sbjct: 133 VAKKAGIDLRKK 143

[Close]
BLAST of Moc05g01130 vs. ExPASy Swiss-Prot
Match: Q8DG62 (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpmB PE=3 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 0 

Query: 73  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 132
           RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ 
Sbjct: 3   RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62

Query: 133 GLDAVAKKAGIDLRK 148
           GL A AK+AG+DL K
Sbjct: 63  GLSAFAKEAGLDLNK 77

[Close]
BLAST of Moc05g01130 vs. ExPASy Swiss-Prot
Match: B8HUV7 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmB PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.3e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 0 

Query: 73  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 132
           RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  
Sbjct: 3   RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62

Query: 133 GLDAVAKKAGIDLRK 148
           GLD+ A++AGIDL K
Sbjct: 63  GLDSFAREAGIDLNK 77

[Close]
BLAST of Moc05g01130 vs. ExPASy TrEMBL
Match: A0A6J1CX73 (50S ribosomal protein L28, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015252 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.7e-73
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS
Sbjct: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of Moc05g01130 vs. ExPASy TrEMBL
Match: A0A6J1IT28 (50S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479118 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.0e-62
Identity = 130/148 (87.84%), Postives = 138/148 (93.24%), Query Frame = 0 

Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MA S VLG +P ++SGVMAASS++LHFRTK N ELGFL+SQL GIKISSN+S I  +PIS
Sbjct: 1   MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of Moc05g01130 vs. ExPASy TrEMBL
Match: A0A6J1E916 (50S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431774 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 129/148 (87.16%), Postives = 138/148 (93.24%), Query Frame = 0 

Query: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60
           MA S VLG +P  +SGVMAASS++LHFR+K N ELGFL+SQL GIKISSN+S I ++PIS
Sbjct: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS 60

Query: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120
           APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of Moc05g01130 vs. ExPASy TrEMBL
Match: A0A5A7U1W6 (50S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001850 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 8.4e-60
Identity = 129/150 (86.00%), Postives = 137/150 (91.33%), Query Frame = 0 

Query: 1   MAASVVLGLSPGNTS-GVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPI 60
           MAASVV G +P  TS GVMA SST+LHFRTK NS+LGFL SQL GIKISSN+S I  +PI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of Moc05g01130 vs. ExPASy TrEMBL
Match: A0A1S3AWK5 (50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 8.4e-60
Identity = 129/150 (86.00%), Postives = 137/150 (91.33%), Query Frame = 0 

Query: 1   MAASVVLGLSPGNTS-GVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPI 60
           MAASVV G +P  TS GVMA SST+LHFRTK NS+LGFL SQL GIKISSN+S I  +PI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of Moc05g01130 vs. TAIR 10
Match: AT2G33450.1 (Ribosomal L28 family )

HSP 1 Score: 174.5 bits (441), Expect = 6.4e-44
Identity = 95/132 (71.97%), Postives = 108/132 (81.82%), Query Frame = 0 

Query: 18  MAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPISAPLRPALQP-VARRVCP 77
           M +S+  +   T  + ELGFLTSQL G++IS   S + +  IS P  P +QP VARR+CP
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVINR-ISLPSFPGIQPIVARRICP 72

Query: 78  FTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDA 137
           FTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDA
Sbjct: 73  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 132

Query: 138 VAKKAGIDLRKE 149
           VAKKAGIDLRK+
Sbjct: 133 VAKKAGIDLRKK 143

The following BLAST results are available for this feature:
BLAST of Moc05g01130 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145908.11.4e-72100.0050S ribosomal protein L28, chloroplastic [Momordica charantia][more]
XP_038885053.13.8e-6289.1950S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S... [more]
XP_022979375.18.4e-6287.8450S ribosomal protein L28, chloroplastic [Cucurbita maxima][more]
XP_023526300.11.4e-6187.8450S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo][more]
KAG7018806.12.4e-6187.1650S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of Moc05g01130 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P822452.7e-4773.1550S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 P... [more]
P309566.7e-4675.2150S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 P... [more]
O227959.0e-4371.9750S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
Q8DG623.7e-2064.0050S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=1972... [more]
B8HUV76.3e-2064.0050S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39... [more]
BLAST of Moc05g01130 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CX736.7e-73100.0050S ribosomal protein L28, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1IT284.0e-6287.8450S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
A0A6J1E9161.2e-6187.1650S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A5A7U1W68.4e-6086.0050S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3AWK58.4e-6086.0050S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567... [more]
BLAST of Moc05g01130 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G33450.16.4e-4471.97Ribosomal L28 family [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037147Ribosomal protein L28/L24 superfamilyGENE3D2.30.170.40Ribosomal protein L28/L24coord: 72..148
e-value: 1.7E-28
score: 100.4
IPR001383Ribosomal protein L28TIGRFAMTIGR00009TIGR00009coord: 73..128
e-value: 2.5E-16
score: 57.9
IPR001383Ribosomal protein L28HAMAPMF_00373Ribosomal_L28coord: 70..146
score: 13.90849
IPR026569Ribosomal protein L28/L24PFAMPF00830Ribosomal_L28coord: 73..131
e-value: 1.2E-18
score: 67.0
IPR026569Ribosomal protein L28/L24PANTHERPTHR1352839S RIBOSOMAL PROTEIN L28, MITOCHONDRIALcoord: 22..148
NoneNo IPR availablePANTHERPTHR13528:SF650S RIBOSOMAL PROTEIN L28, CHLOROPLASTICcoord: 22..148
IPR034704L28p-likeSUPERFAMILY143800L28p-likecoord: 73..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g01130.1Moc05g01130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome