Moc04g40090 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g40090
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionNADH-ubiquinone oxidoreductase chain 3
Locationchr4: 29769342 .. 29770526 (+)
RNA-Seq ExpressionMoc04g40090
SyntenyMoc04g40090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTCGATCCCGTTCCTCTGTTCACACTCCTGCGCGAGGAAGGGAACGACCACCTCTCCAATTCTGCGAAGCAAATGGGTCAAGAAGTAACAGGGTTGCAGGCAAAACTGAATGAGGTTTGCATGAAGTTAAGTGGTGTAACCCACTTACGCGCGGAGATCACGAAGCTGATTATAGCTATGTGCAGAAACCACGCTCATGCAGAGTAAACAAGGGATATCCAAGAACCGTTAGCACGAGCTCGAAAAATGGATATTGAAGAGGACAGGATGATCGAGTCCAAATTCAGCGCGACCCAAATAAAAGAAAAGCATCGGCAGTCGATGGTCGAGAGACCCCACGTGAGGGGCGACAATGGACGCAAGCCACTGAGTGACTAAACTTGGGACCGTGGAAGACAACTCTTGATCCCCATAGGGATCTGTGTGACTATCTGAATTCGAATGTCGGAGATTAAAGGCAGACCTTGAATGCCCGAGCAAAGGGTCAGCAACTCCGCTGCACTAAACTCCAGGGTCGACGGGTGTGTAAACTGAGCAATAAGAGGTAAACATGCGTTTAAAGTGTCACCGAAACCCAAAATTACCAAAAGGGTGATTTTGGTAATATTGGTAATTTTTGAAAAGGGCATAATTACAAGGTTTTCTGAGTAATTTTTTGGCCAAAAAATGGTTTATTTGTCTGGATAAACAATTATTCAAAAAAAAAACCCTTACTCTCGAACAAAGCAAGGGATTGAGCTGCGGACGACTTTGCCTCCCCAGAAGAAAAAGAGCCCCTTAAGTTACCCGAAGCAAGGATCCTTTTGCTTACCGATAAAAGAATGTTGGGTTACTCTGAGAAATCTCATTTCTTTCTCGTCCACTCAGGGGACCCACGCCTAGGGATATACAAGCGTCATTCTTCAGATGGATCGCTGCCTATGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGATTTTATCTTGTTTCCATTTTATTTATTATCCTTGATCCGGAAGTAACCTTTTCGGGAAGAGGAAATCAGGTGTGAGGTCTGAAGTCAACGGCAACCAAACCCAAAATTACCAAAATGACGTTTTCGGAATAATTTTTTTGCCACAAAATGGTTTATTTGTCATTTAATAGGATGCTGGGCAAACGGGAAGGAAAATGAATGTGTAA

mRNA sequence

ATGACAGTCGATCCCGTTCCTCTGTTCACACTCCTGCGCGAGGAAGGGAACGACCACCTCTCCAATTCTGCGAAGCAAATGGGTCAAGAAGTAACAGGGTTGCAGGCAAAACTGAATGAGACCTTGAATGCCCGAGCAAAGGGTCAGCAACTCCGCTGCACTAAACTCCAGGGTCGACGGGTGTGTAAACTGAGCAATAAGAGGGGACCCACGCCTAGGGATATACAAGCGTCATTCTTCAGATGGATCGCTGCCTATGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGATTTTATCTTGTTTCCATTTTATTTATTATCCTTGATCCGGAAGTAACCTTTTCGGGAAGAGGAAATCAGGATGCTGGGCAAACGGGAAGGAAAATGAATGTGTAA

Coding sequence (CDS)

ATGACAGTCGATCCCGTTCCTCTGTTCACACTCCTGCGCGAGGAAGGGAACGACCACCTCTCCAATTCTGCGAAGCAAATGGGTCAAGAAGTAACAGGGTTGCAGGCAAAACTGAATGAGACCTTGAATGCCCGAGCAAAGGGTCAGCAACTCCGCTGCACTAAACTCCAGGGTCGACGGGTGTGTAAACTGAGCAATAAGAGGGGACCCACGCCTAGGGATATACAAGCGTCATTCTTCAGATGGATCGCTGCCTATGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGATTTTATCTTGTTTCCATTTTATTTATTATCCTTGATCCGGAAGTAACCTTTTCGGGAAGAGGAAATCAGGATGCTGGGCAAACGGGAAGGAAAATGAATGTGTAA

Protein sequence

MTVDPVPLFTLLREEGNDHLSNSAKQMGQEVTGLQAKLNETLNARAKGQQLRCTKLQGRRVCKLSNKRGPTPRDIQASFFRWIAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFSGRGNQDAGQTGRKMNV
Homology
[Close]
BLAST of Moc04g40090 vs. NCBI nr
Match: AEN56123.1 (NADH dehydrogenase subunit 3 [Cucumis melo subsp. melo] >AZP40282.1 NADH dehydrogenase subunit 3 [Cucumis melo var. momordica])

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-12
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 77  ASFFRWIAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 122
           A++   ++AYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS
Sbjct: 33  ATYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 77

[Close]
BLAST of Moc04g40090 vs. NCBI nr
Match: KAA0065512.1 (ribosomal protein S12C [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-12
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 77  ASFFRWIAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 122
           A++   ++AYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS
Sbjct: 60  ATYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 104

[Close]
BLAST of Moc04g40090 vs. NCBI nr
Match: YP_009241665.1 (NADH dehydrogenase subunit 3 [Ziziphus jujuba] >AMP43648.1 NADH dehydrogenase subunit 3 [Ziziphus jujuba])

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-12
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 83  IAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 122
           ++AYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS
Sbjct: 39  LSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 77

[Close]
BLAST of Moc04g40090 vs. NCBI nr
Match: XP_023545342.1 (uncharacterized protein LOC111804780 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-12
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 83  IAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 122
           ++AYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS
Sbjct: 39  LSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 77

[Close]
BLAST of Moc04g40090 vs. NCBI nr
Match: YP_009565394.1 (NADH dehydrogenase subunit 3 [Morus notabilis] >QBB08751.1 NADH dehydrogenase subunit 3 [Morus notabilis])

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-12
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 83  IAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 122
           ++AYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS
Sbjct: 39  LSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 77

[Close]
BLAST of Moc04g40090 vs. ExPASy Swiss-Prot
Match: P27062 (NADH-ubiquinone oxidoreductase chain 3 OS=Panax ginseng OX=4054 GN=ND3 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-14
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 83  IAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 122
           ++AYECGFDPSGDARSRFDIRFYLVSILFII DPEVTFS
Sbjct: 39  LSAYECGFDPSGDARSRFDIRFYLVSILFIIPDPEVTFS 77

[Close]
BLAST of Moc04g40090 vs. ExPASy Swiss-Prot
Match: O99869 (NADH-ubiquinone oxidoreductase chain 3 OS=Solanum tuberosum OX=4113 GN=ND3 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-12
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 84  AAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 122
           +AYECG DPSGDARSR DIRFYLVSILFII DPEVTFS
Sbjct: 40  SAYECGLDPSGDARSRVDIRFYLVSILFIIPDPEVTFS 77

[Close]
BLAST of Moc04g40090 vs. ExPASy Swiss-Prot
Match: Q96007 (NADH-ubiquinone oxidoreductase chain 3 OS=Allium cepa OX=4679 GN=ND3 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.6e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 83  IAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTF 121
           ++AYECGFDP GDARSRFDIRFYLVSILFII D EVTF
Sbjct: 39  LSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTF 76

[Close]
BLAST of Moc04g40090 vs. ExPASy Swiss-Prot
Match: P60159 (NADH-ubiquinone oxidoreductase chain 3 OS=Helianthus annuus OX=4232 GN=ND3 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.6e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 83  IAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTF 121
           ++AYECGFDP GDARSRFDIRFYLVSILFII D EVTF
Sbjct: 39  LSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTF 76

[Close]
BLAST of Moc04g40090 vs. ExPASy Swiss-Prot
Match: P16265 (NADH-ubiquinone oxidoreductase chain 3 OS=Zea mays OX=4577 GN=ND3 PE=2 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 2.6e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 83  IAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTF 121
           ++AYECGFDP GDARSRFDIRFYLVSILFII D EVTF
Sbjct: 39  LSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTF 76

[Close]
BLAST of Moc04g40090 vs. ExPASy TrEMBL
Match: A0A5A7VB34 (NADH dehydrogenase subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46348G00010 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 9.4e-13
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 77  ASFFRWIAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 122
           A++   ++AYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS
Sbjct: 60  ATYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 104

[Close]
BLAST of Moc04g40090 vs. ExPASy TrEMBL
Match: G3EU38 (NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis melo subsp. melo OX=412675 GN=nad3 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 9.4e-13
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 77  ASFFRWIAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 122
           A++   ++AYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS
Sbjct: 33  ATYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 77

[Close]
BLAST of Moc04g40090 vs. ExPASy TrEMBL
Match: A0A3Q9CSW0 (NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis melo var. momordica OX=2034244 GN=nad3 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 9.4e-13
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 77  ASFFRWIAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 122
           A++   ++AYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS
Sbjct: 33  ATYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 77

[Close]
BLAST of Moc04g40090 vs. ExPASy TrEMBL
Match: A0A142BZ04 (NADH-ubiquinone oxidoreductase chain 3 OS=Ziziphus jujuba OX=326968 GN=nad3 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 83  IAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 122
           ++AYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS
Sbjct: 39  LSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 77

[Close]
BLAST of Moc04g40090 vs. ExPASy TrEMBL
Match: A0A7D5XZ34 (NADH-ubiquinone oxidoreductase chain 3 OS=Luffa acutangula OX=56866 GN=nad3 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 83  IAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 122
           ++AYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS
Sbjct: 39  LSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFS 77

[Close]
BLAST of Moc04g40090 vs. TAIR 10
Match: AT2G07751.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 83  IAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTF 121
           ++AYECGFDPSGDARSRFDIRFYLVSILF+I D EVTF
Sbjct: 39  LSAYECGFDPSGDARSRFDIRFYLVSILFLIPDLEVTF 76

[Close]
BLAST of Moc04g40090 vs. TAIR 10
Match: ATMG00990.1 (NADH dehydrogenase 3 )

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 83  IAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTF 121
           ++AYECGFDPSGDARSRFDIRFYLVSILF+I D EVTF
Sbjct: 40  LSAYECGFDPSGDARSRFDIRFYLVSILFLIPDLEVTF 77

[Close]
BLAST of Moc04g40090 vs. TAIR 10
Match: ATCG00440.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.6e-04
Identity = 15/38 (39.47%), Postives = 27/38 (71.05%), Query Frame = 0 

Query: 83  IAAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTF 121
           +++YE G +P GDA  +F IR+Y+ +++F++ D E  F
Sbjct: 41  LSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVF 78

The following BLAST results are available for this feature:
BLAST of Moc04g40090 vs. NCBI nr
Match NameE-valueIdentityDescription
AEN56123.11.9e-1284.44NADH dehydrogenase subunit 3 [Cucumis melo subsp. melo] >AZP40282.1 NADH dehydro... [more]
KAA0065512.11.9e-1284.44ribosomal protein S12C [Cucumis melo var. makuwa][more]
YP_009241665.12.5e-1294.87NADH dehydrogenase subunit 3 [Ziziphus jujuba] >AMP43648.1 NADH dehydrogenase su... [more]
XP_023545342.12.5e-1294.87uncharacterized protein LOC111804780 [Cucurbita pepo subsp. pepo][more]
YP_009565394.12.5e-1294.87NADH dehydrogenase subunit 3 [Morus notabilis] >QBB08751.1 NADH dehydrogenase su... [more]
BLAST of Moc04g40090 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P270622.1e-1492.31NADH-ubiquinone oxidoreductase chain 3 OS=Panax ginseng OX=4054 GN=ND3 PE=3 SV=1[more]
O998691.5e-1289.47NADH-ubiquinone oxidoreductase chain 3 OS=Solanum tuberosum OX=4113 GN=ND3 PE=3 ... [more]
Q960072.6e-1286.84NADH-ubiquinone oxidoreductase chain 3 OS=Allium cepa OX=4679 GN=ND3 PE=3 SV=1[more]
P601592.6e-1286.84NADH-ubiquinone oxidoreductase chain 3 OS=Helianthus annuus OX=4232 GN=ND3 PE=2 ... [more]
P162652.6e-1286.84NADH-ubiquinone oxidoreductase chain 3 OS=Zea mays OX=4577 GN=ND3 PE=2 SV=3[more]
BLAST of Moc04g40090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VB349.4e-1384.44NADH dehydrogenase subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
G3EU389.4e-1384.44NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis melo subsp. melo OX=412675 GN=... [more]
A0A3Q9CSW09.4e-1384.44NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis melo var. momordica OX=2034244... [more]
A0A142BZ041.2e-1294.87NADH-ubiquinone oxidoreductase chain 3 OS=Ziziphus jujuba OX=326968 GN=nad3 PE=3... [more]
A0A7D5XZ341.2e-1294.87NADH-ubiquinone oxidoreductase chain 3 OS=Luffa acutangula OX=56866 GN=nad3 PE=3... [more]
BLAST of Moc04g40090 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07751.11.4e-1386.84NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein [more]
ATMG00990.11.4e-1386.84NADH dehydrogenase 3 [more]
ATCG00440.11.6e-0439.47NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3PFAMPF00507Oxidored_q4coord: 84..120
e-value: 7.1E-12
score: 45.3
IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3PANTHERPTHR11058NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3coord: 81..121
IPR038430NADH:ubiquinone oxidoreductase, subunit 3 superfamilyGENE3D1.20.58.1610NADH:ubiquinone/plastoquinone oxidoreductase, chain 3coord: 72..121
e-value: 3.4E-13
score: 51.5
NoneNo IPR availablePANTHERPTHR11058:SF17NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3coord: 81..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g40090.1Moc04g40090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0070469 respirasome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0048038 quinone binding
molecular_function GO:0003735 structural constituent of ribosome