Moc04g40030 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g40030
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic
Location	chr4: 29708137 .. 29708439 (+)
RNA-Seq Expression	Moc04g40030
Synteny	Moc04g40030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTAAAACAAGTGTACGAGGTGCTGAGCAACGAAGAAAGCCGCAAATTTTACGACTGGACGCTTGCCCAGGAAGAGGCGAGCCGCCAAGCTGAGAAATTGAGGATCAAGTTGGAAGATCCTTACGAGCAAGAGTTGGAGAACTTCAAATCCACTCCGGACATGGTGGATCGACTTGCAGGAAGGAACATGGAGTTGAGTGATCAGGCCACCACTGCTCTTACATTGGATATCTTCATCATTCTCTTTGCTATATGTTGCATTGTATATGTTCTAATTTTTAAAGAGCCATATTATTAG

mRNA sequence

ATGAAATTAAAACAAGTGTACGAGGTGCTGAGCAACGAAGAAAGCCGCAAATTTTACGACTGGACGCTTGCCCAGGAAGAGGCGAGCCGCCAAGCTGAGAAATTGAGGATCAAGTTGGAAGATCCTTACGAGCAAGAGTTGGAGAACTTCAAATCCACTCCGGACATGGTGGATCGACTTGCAGGAAGGAACATGGAGTTGAGTGATCAGGCCACCACTGCTCTTACATTGGATATCTTCATCATTCTCTTTGCTATATGTTGCATTGTATATGTTCTAATTTTTAAAGAGCCATATTATTAG

Coding sequence (CDS)

ATGAAATTAAAACAAGTGTACGAGGTGCTGAGCAACGAAGAAAGCCGCAAATTTTACGACTGGACGCTTGCCCAGGAAGAGGCGAGCCGCCAAGCTGAGAAATTGAGGATCAAGTTGGAAGATCCTTACGAGCAAGAGTTGGAGAACTTCAAATCCACTCCGGACATGGTGGATCGACTTGCAGGAAGGAACATGGAGTTGAGTGATCAGGCCACCACTGCTCTTACATTGGATATCTTCATCATTCTCTTTGCTATATGTTGCATTGTATATGTTCTAATTTTTAAAGAGCCATATTATTAG

Protein sequence

MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRLAGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY

Homology

[Close]

BLAST of Moc04g40030 vs. NCBI nr
Match: XP_022152484.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Momordica charantia])

HSP 1 Score: 191.4 bits (485), Expect = 3.7e-45
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 60
           MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL
Sbjct: 132 MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 191

Query: 61  AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 101
           AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY
Sbjct: 192 AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 231

[Close]

BLAST of Moc04g40030 vs. NCBI nr
Match: XP_038893780.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Benincasa hispida])

HSP 1 Score: 182.6 bits (462), Expect = 1.7e-42
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 60
           MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQEL+N+KSTPDMVDRL
Sbjct: 133 MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELQNWKSTPDMVDRL 192

Query: 61  AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 101
            GRNMELSDQATTALTLDIFIILFAI CIVYVL+FKEPYY
Sbjct: 193 GGRNMELSDQATTALTLDIFIILFAIACIVYVLLFKEPYY 232

[Close]

BLAST of Moc04g40030 vs. NCBI nr
Match: XP_008462782.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucumis melo] >TYJ99021.1 NAD(P)H-quinone oxidoreductase subunit T [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 6.5e-42
Identity = 94/100 (94.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 60
           MKLKQVYEVLSNEESRKFYDWTLAQEEASRQA+KLRIKLEDPYEQEL+N++STPDMVDRL
Sbjct: 135 MKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWQSTPDMVDRL 194

Query: 61  AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 101
            GRNMELSDQATTALTLDIFIILFAI CIVYVLIFKEPYY
Sbjct: 195 GGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEPYY 234

[Close]

BLAST of Moc04g40030 vs. NCBI nr
Match: KAG7033427.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.3 bits (451), Expect = 3.2e-41
Identity = 93/100 (93.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 60
           MKLKQVYEVLSNEESRKFYDWTLAQEEASRQA+KLRIKLEDPYEQEL+N+KSTPDMVDRL
Sbjct: 383 MKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRL 442

Query: 61  AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 101
           AGRNM+LSDQATTALTLDI IILFAI CIVYVL+FKEPYY
Sbjct: 443 AGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 482

[Close]

BLAST of Moc04g40030 vs. NCBI nr
Match: KAG6602740.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178.3 bits (451), Expect = 3.2e-41
Identity = 93/100 (93.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 60
           MKLKQVYEVLSNEESRKFYDWTLAQEEASRQA+KLRIKLEDPYEQEL+N+KSTPDMVDRL
Sbjct: 374 MKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRL 433

Query: 61  AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 101
           AGRNM+LSDQATTALTLDI IILFAI CIVYVL+FKEPYY
Sbjct: 434 AGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 473

[Close]

BLAST of Moc04g40030 vs. ExPASy Swiss-Prot
Match: Q9SMS0 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhT PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.0e-34
Identity = 71/100 (71.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 60
           MKL++VY VLS+EE+R+FYDWTLAQE ASRQAEK+R+KLEDP EQ+   ++S PDMVDRL
Sbjct: 150 MKLREVYNVLSDEETRRFYDWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRL 209

Query: 61  AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 101
            GRNMELSDQA TALT DI I+LFA+CCI +V++FK+P Y
Sbjct: 210 GGRNMELSDQAMTALTFDILIVLFAVCCIAFVIVFKDPSY 249

[Close]

BLAST of Moc04g40030 vs. ExPASy TrEMBL
Match: A0A6J1DG49 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020201 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 60
           MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL
Sbjct: 132 MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 191

Query: 61  AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 101
           AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY
Sbjct: 192 AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 231

[Close]

BLAST of Moc04g40030 vs. ExPASy TrEMBL
Match: A0A5D3BJW7 (NAD(P)H-quinone oxidoreductase subunit T OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002250 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.1e-42
Identity = 94/100 (94.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 60
           MKLKQVYEVLSNEESRKFYDWTLAQEEASRQA+KLRIKLEDPYEQEL+N++STPDMVDRL
Sbjct: 135 MKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWQSTPDMVDRL 194

Query: 61  AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 101
            GRNMELSDQATTALTLDIFIILFAI CIVYVLIFKEPYY
Sbjct: 195 GGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEPYY 234

[Close]

BLAST of Moc04g40030 vs. ExPASy TrEMBL
Match: A0A1S3CHS6 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501040 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.1e-42
Identity = 94/100 (94.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 60
           MKLKQVYEVLSNEESRKFYDWTLAQEEASRQA+KLRIKLEDPYEQEL+N++STPDMVDRL
Sbjct: 135 MKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWQSTPDMVDRL 194

Query: 61  AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 101
            GRNMELSDQATTALTLDIFIILFAI CIVYVLIFKEPYY
Sbjct: 195 GGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEPYY 234

[Close]

BLAST of Moc04g40030 vs. ExPASy TrEMBL
Match: A0A6J1JM84 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487152 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.6e-41
Identity = 93/100 (93.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 60
           MKLKQVYEVLSNEESRKFYDWTLAQEEASRQA+KLRIKLEDPYEQEL+N+KSTPDMVDRL
Sbjct: 137 MKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRL 196

Query: 61  AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 101
           AGRNM+LSDQATTALTLDI IILFAI CIVYVL+FKEPYY
Sbjct: 197 AGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 236

[Close]

BLAST of Moc04g40030 vs. ExPASy TrEMBL
Match: A0A6J1HJ56 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464036 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.6e-41
Identity = 93/100 (93.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 60
           MKLKQVYEVLSNEESRKFYDWTLAQEEASRQA+KLRIKLEDPYEQEL+N+KSTPDMVDRL
Sbjct: 140 MKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRL 199

Query: 61  AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 101
           AGRNM+LSDQATTALTLDI IILFAI CIVYVL+FKEPYY
Sbjct: 200 AGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 239

[Close]

BLAST of Moc04g40030 vs. TAIR 10
Match: AT4G09350.1 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 145.6 bits (366), Expect = 2.2e-35
Identity = 71/100 (71.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQELENFKSTPDMVDRL 60
           MKL++VY VLS+EE+R+FYDWTLAQE ASRQAEK+R+KLEDP EQ+   ++S PDMVDRL
Sbjct: 150 MKLREVYNVLSDEETRRFYDWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRL 209

Query: 61  AGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 101
            GRNMELSDQA TALT DI I+LFA+CCI +V++FK+P Y
Sbjct: 210 GGRNMELSDQAMTALTFDILIVLFAVCCIAFVIVFKDPSY 249

The following BLAST results are available for this feature:

BLAST of Moc04g40030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152484.1	3.7e-45	100.00	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Momordica charantia]	[more]
XP_038893780.1	1.7e-42	95.00	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Benincasa hispida]	[more]
XP_008462782.1	6.5e-42	94.00	PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucumis melo...	[more]
KAG7033427.1	3.2e-41	93.00	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita argyrosperma ...	[more]
KAG6602740.1	3.2e-41	93.00	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic, partial [Cucurbita argy...	[more]

BLAST of Moc04g40030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMS0	3.0e-34	71.00	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Moc04g40030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DG49	1.8e-45	100.00	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Momordica charantia O...	[more]
A0A5D3BJW7	3.1e-42	94.00	NAD(P)H-quinone oxidoreductase subunit T OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CHS6	3.1e-42	94.00	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A6J1JM84	1.6e-41	93.00	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A6J1HJ56	1.6e-41	93.00	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita moschata OX...	[more]

BLAST of Moc04g40030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09350.1	2.2e-35	71.00	Chaperone DnaJ-domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044618	NAD(P)H-quinone oxidoreductase subunit T-like	PANTHER	PTHR45283	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g40030.1	Moc04g40030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)