Moc04g39200 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g39200
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPentatricopeptide repeat-containing protein
Locationchr4: 29157731 .. 29158397 (-)
RNA-Seq ExpressionMoc04g39200
SyntenyMoc04g39200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCCCATGTACCTAAATTGGCTACTCGAGTCAGCAGAGCTATGCTTTCCGCTGGAGCATGGACGCCTTCACTGGAGCAGAATTTGCATCGACTCGGTTTCCGCCAAACGCTAAATCCATCTCTCGTATCTCAAGTAATCGACCCGCACCTTCTCACTCATCACTCCCTCGCTCTCGGCTTCTTCAATTGGGCTTCTCAGCAACCCGGTTTCGCCCACAATTCGGAATCCTACAAGTCGGTTCTTAAGTGTCTCTCTTTCTCGCGCCAATATGGGGCCATCCATAGTCTCTTAAAACAGGTAAGAACTCAGAAAATTGGCCTCCATTTATCAGTTTATCGCTCTGTCATTGATTCGTTGATCGTAGGCAAGAAGACCCACGATGCTTTTTTGGTTTTTAATGAGGTTACTTCAATTACCAACACTATTGGATCCGAACCATGTAACTCGCTTTTGGCTGCTCTTGCTTCTGATGGGTTCTTTGAGCACGCCCAAAAAGTGTTCGATGAAATGTCTATTAAATGCATTCCTTTTGACACTCTTGGATTTGGTGTGTTTATATGGAGGGTTTGTAGAAATGCTGATATAGTTAAAGTTTTGACCATGCTAGATGATGCCAGGACTAACAATCGAGAGATCAACGGTTCTATTATTGCCACATTGA

mRNA sequence

ATGGAACCCCATGTACCTAAATTGGCTACTCGAGTCAGCAGAGCTATGCTTTCCGCTGGAGCATGGACGCCTTCACTGGAGCAGAATTTGCATCGACTCGGTTTCCGCCAAACGCTAAATCCATCTCTCGTATCTCAAGTAATCGACCCGCACCTTCTCACTCATCACTCCCTCGCTCTCGGCTTCTTCAATTGGGCTTCTCAGCAACCCGGTTTCGCCCACAATTCGGAATCCTACAAGTCGGTTCTTAAGTGTCTCTCTTTCTCGCGCCAATATGGGGCCATCCATAGTCTCTTAAAACAGATGATGCCAGGACTAACAATCGAGAGATCAACGGTTCTATTATTGCCACATTGA

Coding sequence (CDS)

ATGGAACCCCATGTACCTAAATTGGCTACTCGAGTCAGCAGAGCTATGCTTTCCGCTGGAGCATGGACGCCTTCACTGGAGCAGAATTTGCATCGACTCGGTTTCCGCCAAACGCTAAATCCATCTCTCGTATCTCAAGTAATCGACCCGCACCTTCTCACTCATCACTCCCTCGCTCTCGGCTTCTTCAATTGGGCTTCTCAGCAACCCGGTTTCGCCCACAATTCGGAATCCTACAAGTCGGTTCTTAAGTGTCTCTCTTTCTCGCGCCAATATGGGGCCATCCATAGTCTCTTAAAACAGATGATGCCAGGACTAACAATCGAGAGATCAACGGTTCTATTATTGCCACATTGA

Protein sequence

MEPHVPKLATRVSRAMLSAGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLALGFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQMMPGLTIERSTVLLLPH
Homology
[Close]
BLAST of Moc04g39200 vs. NCBI nr
Match: XP_022133909.1 (pentatricopeptide repeat-containing protein At5g14080 [Momordica charantia])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MEPHVPKLATRVSRAMLSAGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLAL 60
           MEPHVPKLATRVSRAMLSAGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLAL
Sbjct: 1   MEPHVPKLATRVSRAMLSAGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLAL 60

Query: 61  GFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQM 103
           GFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQ+
Sbjct: 61  GFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQV 102

[Close]
BLAST of Moc04g39200 vs. NCBI nr
Match: XP_038884953.1 (pentatricopeptide repeat-containing protein At5g14080 [Benincasa hispida])

HSP 1 Score: 187.2 bits (474), Expect = 8.2e-44
Identity = 91/109 (83.49%), Postives = 100/109 (91.74%), Query Frame = 0 

Query: 1   MEPHVPKLATRVSRAMLS-------AGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLL 60
           M+PH+P+LATRVSRA+LS       AG+WTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLL
Sbjct: 1   MKPHIPELATRVSRAILSISNHTSPAGSWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLL 60

Query: 61  THHSLALGFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQM 103
           THHSLALGFFNWASQQPGFAHNS+SYKS+LK LS SRQ+GAIHSLLKQ+
Sbjct: 61  THHSLALGFFNWASQQPGFAHNSDSYKSILKSLSLSRQFGAIHSLLKQV 109

[Close]
BLAST of Moc04g39200 vs. NCBI nr
Match: XP_022939515.1 (pentatricopeptide repeat-containing protein At5g14080 isoform X2 [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 2.6e-42
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = 0 

Query: 1   MEPHVPKLATRVSRAMLS-------AGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLL 60
           M+PH+ +LATRVSR +LS       AG+WTPSLEQNLHRLGFR+TLNPSLVSQVIDPHLL
Sbjct: 1   MKPHLQELATRVSRTILSISNHTRPAGSWTPSLEQNLHRLGFRETLNPSLVSQVIDPHLL 60

Query: 61  THHSLALGFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQMMPGLT 108
           +HHSLALGFFNWASQQPGFAHNSESYKSVLK LS SRQ+GAIHSLLKQ +  +T
Sbjct: 61  SHHSLALGFFNWASQQPGFAHNSESYKSVLKSLSLSRQFGAIHSLLKQELTSVT 114

[Close]
BLAST of Moc04g39200 vs. NCBI nr
Match: KAG6578360.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.6 bits (457), Expect = 7.7e-42
Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = 0 

Query: 1   MEPHVPKLATRVSRAMLS-------AGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLL 60
           M+PH+ +LATRVSR +LS       AG+WTPSLEQNLHRLGFR+TLNPSLVSQVIDPHLL
Sbjct: 1   MKPHLQELATRVSRTILSISNHTRPAGSWTPSLEQNLHRLGFRETLNPSLVSQVIDPHLL 60

Query: 61  THHSLALGFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQM 103
           +HHSLALGFFNWASQQPGFAHNSESYKSVLK LS SRQ+GAIHSLLKQ+
Sbjct: 61  SHHSLALGFFNWASQQPGFAHNSESYKSVLKSLSLSRQFGAIHSLLKQV 109

[Close]
BLAST of Moc04g39200 vs. NCBI nr
Match: XP_022939514.1 (pentatricopeptide repeat-containing protein At5g14080 isoform X1 [Cucurbita moschata])

HSP 1 Score: 180.6 bits (457), Expect = 7.7e-42
Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = 0 

Query: 1   MEPHVPKLATRVSRAMLS-------AGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLL 60
           M+PH+ +LATRVSR +LS       AG+WTPSLEQNLHRLGFR+TLNPSLVSQVIDPHLL
Sbjct: 1   MKPHLQELATRVSRTILSISNHTRPAGSWTPSLEQNLHRLGFRETLNPSLVSQVIDPHLL 60

Query: 61  THHSLALGFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQM 103
           +HHSLALGFFNWASQQPGFAHNSESYKSVLK LS SRQ+GAIHSLLKQ+
Sbjct: 61  SHHSLALGFFNWASQQPGFAHNSESYKSVLKSLSLSRQFGAIHSLLKQV 109

[Close]
BLAST of Moc04g39200 vs. ExPASy Swiss-Prot
Match: Q9FMU2 (Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana OX=3702 GN=At5g14080 PE=2 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 7.2e-27
Identity = 59/114 (51.75%), Postives = 82/114 (71.93%), Query Frame = 0 

Query: 7   KLATRVSRAML-------SAGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLA 66
           +LA R+ R +L       +A  W+P +EQ+LH LGFR +++PSLV++VIDP LL HHSLA
Sbjct: 6   ELAVRIGRELLKVSGSSRAARIWSPLIEQSLHGLGFRHSISPSLVARVIDPFLLNHHSLA 65

Query: 67  LGFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQMMPGLTIERSTV 114
           LGFFNWA+QQPG++H+S SY S+ K LS SRQ+ A+ +L KQ+     +  S+V
Sbjct: 66  LGFFNWAAQQPGYSHDSISYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSV 119

[Close]
BLAST of Moc04g39200 vs. ExPASy Swiss-Prot
Match: Q8GYP6 (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana OX=3702 GN=At1g18900 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-07
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = 0 

Query: 22  WTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLALGFFNWASQQPGFAHNSESYKS 81
           W P+ E+ L  LG R  ++    +QV+    +  +  ALGFF W  +QPGF H+  +Y +
Sbjct: 314 WGPAAEEALQNLGLR--IDAYQANQVLKQ--MNDYGNALGFFYWLKRQPGFKHDGHTYTT 373

Query: 82  VLKCLSFSRQYGAIHSLLKQMM 104
           ++  L  ++Q+GAI+ LL +M+
Sbjct: 374 MVGNLGRAKQFGAINKLLDEMV 391

[Close]
BLAST of Moc04g39200 vs. ExPASy Swiss-Prot
Match: Q9SSF9 (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana OX=3702 GN=At1g74750 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-07
Identity = 28/82 (34.15%), Postives = 50/82 (60.98%), Query Frame = 0 

Query: 22  WTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLALGFFNWASQQPGFAHNSESYKS 81
           W  + E+ LH  GFR  ++    +QV+    + +++ ALGFF W  +QPGF H+  +Y +
Sbjct: 309 WGHAAEEALHNFGFR--MDAYQANQVLKQ--MDNYANALGFFYWLKRQPGFKHDGHTYTT 368

Query: 82  VLKCLSFSRQYGAIHSLLKQMM 104
           ++  L  ++Q+G I+ LL +M+
Sbjct: 369 MVGNLGRAKQFGEINKLLDEMV 386

[Close]
BLAST of Moc04g39200 vs. ExPASy Swiss-Prot
Match: Q9FH87 (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana OX=3702 GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.4e-06
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 0 

Query: 24  PSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLALGFFNWASQQPGFAHNSESYKSVL 83
           P LE  L+  G    L P L+ +V++       +L   FF WA++QP + H+ E YKS++
Sbjct: 98  PKLELALNESGVE--LRPGLIERVLN-RCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMV 157

Query: 84  KCLSFSRQYGAIHSLLKQM 103
           K LS  RQ+GA+  L+++M
Sbjct: 158 KILSKMRQFGAVWGLIEEM 173

[Close]
BLAST of Moc04g39200 vs. ExPASy Swiss-Prot
Match: P0C8A0 (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana OX=3702 GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-05
Identity = 30/92 (32.61%), Postives = 51/92 (55.43%), Query Frame = 0 

Query: 11  RVSRAMLSAGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLALGFFNWASQQP 70
           ++ R + +  +  P LE  L+  G    L P L+ +V+        +L   FF WA++QP
Sbjct: 69  KIYRILRNHHSRVPKLELALNESGI--DLRPGLIIRVLS-RCGDAGNLGYRFFLWATKQP 128

Query: 71  GFAHNSESYKSVLKCLSFSRQYGAIHSLLKQM 103
           G+ H+ E  KS++  LS  RQ+GA+  L+++M
Sbjct: 129 GYFHSYEVCKSMVMILSKMRQFGAVWGLIEEM 157

[Close]
BLAST of Moc04g39200 vs. ExPASy TrEMBL
Match: A0A6J1BXA4 (pentatricopeptide repeat-containing protein At5g14080 OS=Momordica charantia OX=3673 GN=LOC111006340 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.5e-51
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MEPHVPKLATRVSRAMLSAGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLAL 60
           MEPHVPKLATRVSRAMLSAGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLAL
Sbjct: 1   MEPHVPKLATRVSRAMLSAGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLAL 60

Query: 61  GFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQM 103
           GFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQ+
Sbjct: 61  GFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQV 102

[Close]
BLAST of Moc04g39200 vs. ExPASy TrEMBL
Match: A0A6J1FMX2 (pentatricopeptide repeat-containing protein At5g14080 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445400 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = 0 

Query: 1   MEPHVPKLATRVSRAMLS-------AGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLL 60
           M+PH+ +LATRVSR +LS       AG+WTPSLEQNLHRLGFR+TLNPSLVSQVIDPHLL
Sbjct: 1   MKPHLQELATRVSRTILSISNHTRPAGSWTPSLEQNLHRLGFRETLNPSLVSQVIDPHLL 60

Query: 61  THHSLALGFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQMMPGLT 108
           +HHSLALGFFNWASQQPGFAHNSESYKSVLK LS SRQ+GAIHSLLKQ +  +T
Sbjct: 61  SHHSLALGFFNWASQQPGFAHNSESYKSVLKSLSLSRQFGAIHSLLKQELTSVT 114

[Close]
BLAST of Moc04g39200 vs. ExPASy TrEMBL
Match: A0A6J1FHE2 (pentatricopeptide repeat-containing protein At5g14080 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445400 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.7e-42
Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = 0 

Query: 1   MEPHVPKLATRVSRAMLS-------AGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLL 60
           M+PH+ +LATRVSR +LS       AG+WTPSLEQNLHRLGFR+TLNPSLVSQVIDPHLL
Sbjct: 1   MKPHLQELATRVSRTILSISNHTRPAGSWTPSLEQNLHRLGFRETLNPSLVSQVIDPHLL 60

Query: 61  THHSLALGFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQM 103
           +HHSLALGFFNWASQQPGFAHNSESYKSVLK LS SRQ+GAIHSLLKQ+
Sbjct: 61  SHHSLALGFFNWASQQPGFAHNSESYKSVLKSLSLSRQFGAIHSLLKQV 109

[Close]
BLAST of Moc04g39200 vs. ExPASy TrEMBL
Match: A0A6J1JR00 (pentatricopeptide repeat-containing protein At5g14080 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489037 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.3e-42
Identity = 89/114 (78.07%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MEPHVPKLATRVSRAMLS-------AGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLL 60
           M+PH+ +LATRVSR +LS       AG+WTPSLEQNLHRLGFR+TLNPSLVSQVIDPHLL
Sbjct: 1   MKPHLQELATRVSRTVLSISNHTSPAGSWTPSLEQNLHRLGFRETLNPSLVSQVIDPHLL 60

Query: 61  THHSLALGFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQMMPGLT 108
           +HHSLALGFFNWASQQPGFAHNSESYKSVLK LS SRQ+GAIH LLKQ +  +T
Sbjct: 61  SHHSLALGFFNWASQQPGFAHNSESYKSVLKSLSLSRQFGAIHCLLKQEVTSVT 114

[Close]
BLAST of Moc04g39200 vs. ExPASy TrEMBL
Match: A0A6J1JUL2 (pentatricopeptide repeat-containing protein At5g14080 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489037 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.4e-41
Identity = 88/109 (80.73%), Postives = 97/109 (88.99%), Query Frame = 0 

Query: 1   MEPHVPKLATRVSRAMLS-------AGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLL 60
           M+PH+ +LATRVSR +LS       AG+WTPSLEQNLHRLGFR+TLNPSLVSQVIDPHLL
Sbjct: 1   MKPHLQELATRVSRTVLSISNHTSPAGSWTPSLEQNLHRLGFRETLNPSLVSQVIDPHLL 60

Query: 61  THHSLALGFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQM 103
           +HHSLALGFFNWASQQPGFAHNSESYKSVLK LS SRQ+GAIH LLKQ+
Sbjct: 61  SHHSLALGFFNWASQQPGFAHNSESYKSVLKSLSLSRQFGAIHCLLKQV 109

[Close]
BLAST of Moc04g39200 vs. TAIR 10
Match: AT5G14080.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 121.3 bits (303), Expect = 5.1e-28
Identity = 59/114 (51.75%), Postives = 82/114 (71.93%), Query Frame = 0 

Query: 7   KLATRVSRAML-------SAGAWTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLA 66
           +LA R+ R +L       +A  W+P +EQ+LH LGFR +++PSLV++VIDP LL HHSLA
Sbjct: 6   ELAVRIGRELLKVSGSSRAARIWSPLIEQSLHGLGFRHSISPSLVARVIDPFLLNHHSLA 65

Query: 67  LGFFNWASQQPGFAHNSESYKSVLKCLSFSRQYGAIHSLLKQMMPGLTIERSTV 114
           LGFFNWA+QQPG++H+S SY S+ K LS SRQ+ A+ +L KQ+     +  S+V
Sbjct: 66  LGFFNWAAQQPGYSHDSISYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSV 119

[Close]
BLAST of Moc04g39200 vs. TAIR 10
Match: AT1G18900.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-08
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = 0 

Query: 22  WTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLALGFFNWASQQPGFAHNSESYKS 81
           W P+ E+ L  LG R  ++    +QV+    +  +  ALGFF W  +QPGF H+  +Y +
Sbjct: 314 WGPAAEEALQNLGLR--IDAYQANQVLKQ--MNDYGNALGFFYWLKRQPGFKHDGHTYTT 373

Query: 82  VLKCLSFSRQYGAIHSLLKQMM 104
           ++  L  ++Q+GAI+ LL +M+
Sbjct: 374 MVGNLGRAKQFGAINKLLDEMV 391

[Close]
BLAST of Moc04g39200 vs. TAIR 10
Match: AT1G18900.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-08
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = 0 

Query: 22  WTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLALGFFNWASQQPGFAHNSESYKS 81
           W P+ E+ L  LG R  ++    +QV+    +  +  ALGFF W  +QPGF H+  +Y +
Sbjct: 314 WGPAAEEALQNLGLR--IDAYQANQVLKQ--MNDYGNALGFFYWLKRQPGFKHDGHTYTT 373

Query: 82  VLKCLSFSRQYGAIHSLLKQMM 104
           ++  L  ++Q+GAI+ LL +M+
Sbjct: 374 MVGNLGRAKQFGAINKLLDEMV 391

[Close]
BLAST of Moc04g39200 vs. TAIR 10
Match: AT1G18900.3 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-08
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = 0 

Query: 22  WTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLALGFFNWASQQPGFAHNSESYKS 81
           W P+ E+ L  LG R  ++    +QV+    +  +  ALGFF W  +QPGF H+  +Y +
Sbjct: 314 WGPAAEEALQNLGLR--IDAYQANQVLKQ--MNDYGNALGFFYWLKRQPGFKHDGHTYTT 373

Query: 82  VLKCLSFSRQYGAIHSLLKQMM 104
           ++  L  ++Q+GAI+ LL +M+
Sbjct: 374 MVGNLGRAKQFGAINKLLDEMV 391

[Close]
BLAST of Moc04g39200 vs. TAIR 10
Match: AT1G74750.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-08
Identity = 28/82 (34.15%), Postives = 50/82 (60.98%), Query Frame = 0 

Query: 22  WTPSLEQNLHRLGFRQTLNPSLVSQVIDPHLLTHHSLALGFFNWASQQPGFAHNSESYKS 81
           W  + E+ LH  GFR  ++    +QV+    + +++ ALGFF W  +QPGF H+  +Y +
Sbjct: 309 WGHAAEEALHNFGFR--MDAYQANQVLKQ--MDNYANALGFFYWLKRQPGFKHDGHTYTT 368

Query: 82  VLKCLSFSRQYGAIHSLLKQMM 104
           ++  L  ++Q+G I+ LL +M+
Sbjct: 369 MVGNLGRAKQFGEINKLLDEMV 386

The following BLAST results are available for this feature:
BLAST of Moc04g39200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022133909.11.5e-5099.02pentatricopeptide repeat-containing protein At5g14080 [Momordica charantia][more]
XP_038884953.18.2e-4483.49pentatricopeptide repeat-containing protein At5g14080 [Benincasa hispida][more]
XP_022939515.12.6e-4278.95pentatricopeptide repeat-containing protein At5g14080 isoform X2 [Cucurbita mosc... [more]
KAG6578360.17.7e-4281.65Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022939514.17.7e-4281.65pentatricopeptide repeat-containing protein At5g14080 isoform X1 [Cucurbita mosc... [more]
BLAST of Moc04g39200 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FMU27.2e-2751.75Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana OX... [more]
Q8GYP61.7e-0735.37Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana OX... [more]
Q9SSF92.9e-0734.15Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana OX... [more]
Q9FH872.4e-0637.97Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis th... [more]
P0C8A03.5e-0532.61Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana OX... [more]
BLAST of Moc04g39200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BXA47.5e-5199.02pentatricopeptide repeat-containing protein At5g14080 OS=Momordica charantia OX=... [more]
A0A6J1FMX21.3e-4278.95pentatricopeptide repeat-containing protein At5g14080 isoform X2 OS=Cucurbita mo... [more]
A0A6J1FHE23.7e-4281.65pentatricopeptide repeat-containing protein At5g14080 isoform X1 OS=Cucurbita mo... [more]
A0A6J1JR006.3e-4278.07pentatricopeptide repeat-containing protein At5g14080 isoform X2 OS=Cucurbita ma... [more]
A0A6J1JUL21.4e-4180.73pentatricopeptide repeat-containing protein At5g14080 isoform X1 OS=Cucurbita ma... [more]
BLAST of Moc04g39200 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G14080.15.1e-2851.75Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G18900.11.2e-0835.37Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G18900.21.2e-0835.37Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G18900.31.2e-0835.37Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G74750.12.0e-0834.15Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 12..113
e-value: 3.1E-7
score: 32.1
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 5..102
NoneNo IPR availablePANTHERPTHR47938:SF25PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 5..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g39200.1Moc04g39200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding