Moc04g37970 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g37970
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr4: 28434743 .. 28435378 (+)
RNA-Seq Expression	Moc04g37970
Synteny	Moc04g37970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTGGGGAAAGATTGTTGAGCTGTTTGAGCACATGGATACTCTGGTTTATGAGAAGATTATCAAGGGTCAAGATCGAACTCTTATATCGCTGGGTGTATGTGTTGCATCATTGGCCTACTGCTTGGAAACTGAAATCCCTCCAAATCATATATTCCTGGTTACTCTTGGCTTTGCAGCACTTCACATGTTTGGCATTTTCATATTCACTCAACAATGGTTCTCCAACTTCTTGCAGAATTGGGGGAGTTTAGTTTTTCCTTTGGTAGGTGTTTTGAAGGCTTTTGGAAATGGTTATGTTATGTATTACGTAATGGCACATAAGGAACATGCCAATTGGAGATTACTTGTTTTTGTGTTGTCATATGCAACTTTTCATTTCCTCTTGATGATTAACGAGATTGGAGGGAGGGATTTTGGTGTAACAAGGGGTTTTCTCGCTGCTGCTTTCACCCTTGCGATGTTCATACAACAACAGAAAACATTTGGAGTAGCCATAGTTCTAGTTGTATCAACAACATTAGTTTTCTTCAAAGAATGTCACATACAGAGGATGACTTTACAATGCAAAGCGACAACCGAGATGCCCACCTCCAAAACCAACGTGAGAGCCGATGGTGGAACTTATGGATGA

mRNA sequence

ATGAAGTGGGGAAAGATTGTTGAGCTGTTTGAGCACATGGATACTCTGGTTTATGAGAAGATTATCAAGGGTCAAGATCGAACTCTTATATCGCTGGGTGTATGTGTTGCATCATTGGCCTACTGCTTGGAAACTGAAATCCCTCCAAATCATATATTCCTGGTTACTCTTGGCTTTGCAGCACTTCACATGTTTGGCATTTTCATATTCACTCAACAATGGTTCTCCAACTTCTTGCAGAATTGGGGGAGTTTAGTTTTTCCTTTGGTAGGTGTTTTGAAGGCTTTTGGAAATGGTTATGTTATGTATTACGTAATGGCACATAAGGAACATGCCAATTGGAGATTACTTGTTTTTGTGTTGTCATATGCAACTTTTCATTTCCTCTTGATGATTAACGAGATTGGAGGGAGGGATTTTGGTGTAACAAGGGGTTTTCTCGCTGCTGCTTTCACCCTTGCGATGTTCATACAACAACAGAAAACATTTGGAGTAGCCATAGTTCTAGTTGTATCAACAACATTAGTTTTCTTCAAAGAATGTCACATACAGAGGATGACTTTACAATGCAAAGCGACAACCGAGATGCCCACCTCCAAAACCAACGTGAGAGCCGATGGTGGAACTTATGGATGA

Coding sequence (CDS)

ATGAAGTGGGGAAAGATTGTTGAGCTGTTTGAGCACATGGATACTCTGGTTTATGAGAAGATTATCAAGGGTCAAGATCGAACTCTTATATCGCTGGGTGTATGTGTTGCATCATTGGCCTACTGCTTGGAAACTGAAATCCCTCCAAATCATATATTCCTGGTTACTCTTGGCTTTGCAGCACTTCACATGTTTGGCATTTTCATATTCACTCAACAATGGTTCTCCAACTTCTTGCAGAATTGGGGGAGTTTAGTTTTTCCTTTGGTAGGTGTTTTGAAGGCTTTTGGAAATGGTTATGTTATGTATTACGTAATGGCACATAAGGAACATGCCAATTGGAGATTACTTGTTTTTGTGTTGTCATATGCAACTTTTCATTTCCTCTTGATGATTAACGAGATTGGAGGGAGGGATTTTGGTGTAACAAGGGGTTTTCTCGCTGCTGCTTTCACCCTTGCGATGTTCATACAACAACAGAAAACATTTGGAGTAGCCATAGTTCTAGTTGTATCAACAACATTAGTTTTCTTCAAAGAATGTCACATACAGAGGATGACTTTACAATGCAAAGCGACAACCGAGATGCCCACCTCCAAAACCAACGTGAGAGCCGATGGTGGAACTTATGGATGA

Protein sequence

MKWGKIVELFEHMDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFAALHMFGIFIFTQQWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVMAHKEHANWRLLVFVLSYATFHFLLMINEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKECHIQRMTLQCKATTEMPTSKTNVRADGGTYG

Homology

[Close]

BLAST of Moc04g37970 vs. NCBI nr
Match: XP_022134095.1 (uncharacterized protein LOC111006450 [Momordica charantia])

HSP 1 Score: 426.0 bits (1094), Expect = 1.9e-115
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MKWGKIVELFEHMDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFA 60
           MKWGKIVELFEHMDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFA
Sbjct: 1   MKWGKIVELFEHMDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFA 60

Query: 61  ALHMFGIFIFTQQWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVMAHKEHANWRLLVFV 120
           ALHMFGIFIFTQQWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVMAHKEHANWRLLVFV
Sbjct: 61  ALHMFGIFIFTQQWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVMAHKEHANWRLLVFV 120

Query: 121 LSYATFHFLLMINEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKE 180
           LSYATFHFLLMINEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKE
Sbjct: 121 LSYATFHFLLMINEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKE 180

Query: 181 CHIQRMTLQCKATTEMPTSKTNVRADGGTYG 212
           CHIQRMTLQCKATTEMPTSKTNVRADGGTYG
Sbjct: 181 CHIQRMTLQCKATTEMPTSKTNVRADGGTYG 211

[Close]

BLAST of Moc04g37970 vs. ExPASy TrEMBL
Match: A0A6J1BX40 (uncharacterized protein LOC111006450 OS=Momordica charantia OX=3673 GN=LOC111006450 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 9.1e-116
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MKWGKIVELFEHMDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFA 60
           MKWGKIVELFEHMDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFA
Sbjct: 1   MKWGKIVELFEHMDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFA 60

Query: 61  ALHMFGIFIFTQQWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVMAHKEHANWRLLVFV 120
           ALHMFGIFIFTQQWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVMAHKEHANWRLLVFV
Sbjct: 61  ALHMFGIFIFTQQWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVMAHKEHANWRLLVFV 120

Query: 121 LSYATFHFLLMINEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKE 180
           LSYATFHFLLMINEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKE
Sbjct: 121 LSYATFHFLLMINEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKE 180

Query: 181 CHIQRMTLQCKATTEMPTSKTNVRADGGTYG 212
           CHIQRMTLQCKATTEMPTSKTNVRADGGTYG
Sbjct: 181 CHIQRMTLQCKATTEMPTSKTNVRADGGTYG 211

The following BLAST results are available for this feature:

BLAST of Moc04g37970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134095.1	1.9e-115	100.00	uncharacterized protein LOC111006450 [Momordica charantia]	[more]

BLAST of Moc04g37970 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g37970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BX40	9.1e-116	100.00	uncharacterized protein LOC111006450 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of Moc04g37970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g37970.1	Moc04g37970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane