Moc04g37530 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g37530
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	COX assembly mitochondrial protein
Location	chr4: 28110290 .. 28112298 (+)
RNA-Seq Expression	Moc04g37530
Synteny	Moc04g37530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAGAAGGCGTTGAAGGAGTGCGATCATTACGCTTCCAGATATGCGGAATGCGCTTATGGCAGAACGTTATCCGTCGTCTGGAAATGTCGCAGTCAAGCTAAAGAATTGAACAGTTGCCTTCATCAATAGTGAGTCTCGATCAGTTTGTTTAGCTTTTTCGGTAGTTAAACAAAATTTCGGCCATGTTTTTATTCAAAATTTCCGGGTTCTGTTCTGATCATAACAGTGTGCAATGGTTCTTATCATCGTTTCTCACCCCTAATCATCATGTTTAGTCAAATTGATAAGAATCACTGTTGCCATTTTAATTGAGCGTGTCAGTAATAGTAACTTTAGGTGCTGGGTGTGACGACCGAAATTTTGAGCATGGATCTTAATTTCAAAGGATCGAGTTTGAATTTAGAGACATCTTGGTGCATATGAAAATAAGTTAAGCATCACCTATACGTCAAGGTGAGTCTATATGAGTCACCTTTTTTTATTATTATTATTATTGTTTTTTTACTAATCTGGAGTTGGAGCTTTGCTCCTCCATACCCGGGAGCACCCGCGCCCTATGAGTCACCTAATCTTATGCTGTTAATGGAGTGTTTTATGGCATGGGCAAGTGGGCATCGGGTGTCTTCTAACAGTAGCAAAAATATGTTGGATAATGTCGACTGACATGCATTGCACATCTTTCCTACGGGTTAGAGGTTTCTATATATGTTATAACCTTGAAAGTTGAAACAAGTATATCTGATAGTGGGTCGACATGAATGTTAAGTGGTGCTATGCAACAAGAGAGCCTAGATGGATGAATATTCAAGCAAGCCTTCATAGTAATGTAAGGCCTCATGATTCGGTTATTGATAAATGCCTACAAGCAAGTGTTGGTTCTTCTAGATGCCCATGCCCCCATGTTTTGATCTAGGTGGGTAATCTCATGTTGCAGTTTTCGGCAAATAAACAATAAAACAAATCTTGGCCTAGCAGAGAGGCAAGTGTTGTTTGAGTGTCATGAATTAGTGAAGAAGAGGGATAGGCAATGGTGCCATTCAAAATGCCTTCGCCTCAAGTAGAGGCAAGGTGTGAACTTTAAGCTTTAGGCTAAGCCAACTATGAGCAAGGATCTTAAATGGAGTGTTGAGTGTTGAGGCAGGAGTAGCCTTAACGATGTGAATATGAAAGTAAAAGTGTGGAGTGTTTAGTCAAAAGCTTAACTCTAATGGATGTGAAAGGATCTCGAATAGAGTGTTGAAGCAGGAGTATCCTTAATGACAAATAATGAATCGGAGTTGAATCGTCGTCTTTGCATCCATTTTACTCATAAATTATATTGGTTCTTGTTTCTTGATGGCAAAATTAAAATACAGTGGTGAACTTTAGAGAATTATGCAGAGTTCAACTAAAATGTCTTAGAAAATGTTGACAAAGGCTTGAGGTCTCTTAGTCATATTGGCTTAGAGGTCTCAAGTTCAAACCTTCTTGTGAGGTTAATACAAAAAATCTTTGATGTCTCCTGAATTCGGGCCTTGGGGCAGGTGCGGATGCCCCTGGGTATAGGAAAGCAAAACTCTAATTCCCGGTTATCAAAAAAAAAAAAAGTTGACAAAAGGAGCATGCGTCCACAATGCAACTTAAGGGAGCAAATATTTTGCCATCTTAGCTTGATGTTTCTTTGGTTCAAGTATAGTTTTTGTCCTCAATTACTGCTGTTTCTTCTCCATGAGAGGGATACAAGCCTGATGCTTCTCAGCATAGTTTTATTGAAAATACAACAGCGAATTGAGTTAACATTGTGGTCTAAGGATTATAAACGTTCTTCATATTAGTCTTTACTAAGAAATAGTATTGGTATGAACTCAAATTTTCATAAACAGAGCATTCACTATTAATTGATGGAATATATCATTTACCCTACTTTAATTCATGTGTTCTCTTTTTCGTTTTCCAGCACTAACGACACCGTTCTGGAAGAGATGAAGCGAGACTACGCGCTTCAACAAGATGGGAAGTCATGA

mRNA sequence

ATGAAGCAGAAGGCGTTGAAGGAGTGCGATCATTACGCTTCCAGATATGCGGAATGCGCTTATGGCAGAACGTTATCCGTCGTCTGGAAATGTCGCAGTCAAGCTAAAGAATTGAACAGTTGCCTTCATCAATACACTAACGACACCGTTCTGGAAGAGATGAAGCGAGACTACGCGCTTCAACAAGATGGGAAGTCATGA

Coding sequence (CDS)

ATGAAGCAGAAGGCGTTGAAGGAGTGCGATCATTACGCTTCCAGATATGCGGAATGCGCTTATGGCAGAACGTTATCCGTCGTCTGGAAATGTCGCAGTCAAGCTAAAGAATTGAACAGTTGCCTTCATCAATACACTAACGACACCGTTCTGGAAGAGATGAAGCGAGACTACGCGCTTCAACAAGATGGGAAGTCATGA

Protein sequence

MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYALQQDGKS

Homology

[Close]

BLAST of Moc04g37530 vs. NCBI nr
Match: XP_022133533.1 (uncharacterized protein DDB_G0275933 [Momordica charantia] >XP_022133534.1 uncharacterized protein DDB_G0275933 [Momordica charantia])

HSP 1 Score: 141.0 bits (354), Expect = 3.8e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL 60
          MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL
Sbjct: 24 MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL 83

Query: 61 QQDGKS 67
          QQDGKS
Sbjct: 84 QQDGKS 89

[Close]

BLAST of Moc04g37530 vs. NCBI nr
Match: KAG6578501.1 (hypothetical protein SDJN03_22949, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.9 bits (320), Expect = 3.3e-26
Identity = 58/65 (89.23%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL 60
          MKQKA+KECDHYAS+YAECAYGRTLSVV+KCR+QAKELN+CLHQYTNDTVLEEMKR+YAL
Sbjct: 24 MKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKELNNCLHQYTNDTVLEEMKREYAL 83

Query: 61 QQDGK 66
          Q DGK
Sbjct: 84 QHDGK 88

[Close]

BLAST of Moc04g37530 vs. NCBI nr
Match: XP_022993759.1 (uncharacterized protein DDB_G0275933 [Cucurbita maxima] >KAG7016065.1 hypothetical protein SDJN02_21169 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.9 bits (320), Expect = 3.3e-26
Identity = 58/65 (89.23%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL 60
          MKQKA+KECDHYAS+YAECAYGRTLSVV+KCR+QAKELN+CLHQYTNDTVLEEMKR+YAL
Sbjct: 24 MKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKELNNCLHQYTNDTVLEEMKREYAL 83

Query: 61 QQDGK 66
          Q DGK
Sbjct: 84 QHDGK 88

[Close]

BLAST of Moc04g37530 vs. NCBI nr
Match: XP_023549716.1 (uncharacterized protein DDB_G0275933 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL 60
          MKQKA+KECDHYAS+YAECAYGRTLSVV+KCR QAKELN+CLHQYTNDTVLEEMKR+YAL
Sbjct: 24 MKQKAMKECDHYASKYAECAYGRTLSVVFKCRDQAKELNNCLHQYTNDTVLEEMKREYAL 83

Query: 61 QQDGK 66
          Q DGK
Sbjct: 84 QHDGK 88

[Close]

BLAST of Moc04g37530 vs. NCBI nr
Match: XP_022938373.1 (uncharacterized protein DDB_G0275933 [Cucurbita moschata])

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-25
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL 60
          MKQKA+KECDHYAS+YAECAYGRTLSVV+KCR+QAKELN+CLHQYTNDTVLEEMKR+YA 
Sbjct: 24 MKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKELNNCLHQYTNDTVLEEMKREYAH 83

Query: 61 QQDGK 66
          Q DGK
Sbjct: 84 QHDGK 88

[Close]

BLAST of Moc04g37530 vs. ExPASy Swiss-Prot
Match: Q552P9 (Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0275933 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.3e-06
Identity = 21/58 (36.21%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 1  MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDY 59
          +K ++LKEC  + + +A+C+  + +SVVW+CR   + + +CL +YT    L  MKR++
Sbjct: 38 LKDQSLKECSSHVAAFADCSKDKYISVVWECRELQQLMKNCLVEYTTSERLIGMKREW 95

[Close]

BLAST of Moc04g37530 vs. ExPASy Swiss-Prot
Match: G2TRU5 (COX assembly mitochondrial protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cmc2 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.7e-04
Identity = 21/57 (36.84%), Postives = 33/57 (57.89%), Query Frame = 0


Query: 3  QKALKE-CDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDY 59
          QK LK+ C      + +CA GRT SV WKCRS+ K +  CL +  ++    +++ +Y
Sbjct: 17 QKLLKKNCQKEIEDFVKCATGRTFSVTWKCRSENKTMKDCLTKAADEISEWQIRSEY 73

[Close]

BLAST of Moc04g37530 vs. ExPASy TrEMBL
Match: A0A6J1BW91 (COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC111006094 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL 60
          MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL
Sbjct: 24 MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL 83

Query: 61 QQDGKS 67
          QQDGKS
Sbjct: 84 QQDGKS 89

[Close]

BLAST of Moc04g37530 vs. ExPASy TrEMBL
Match: A0A6J1K100 (COX assembly mitochondrial protein OS=Cucurbita maxima OX=3661 GN=LOC111489669 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-26
Identity = 58/65 (89.23%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL 60
          MKQKA+KECDHYAS+YAECAYGRTLSVV+KCR+QAKELN+CLHQYTNDTVLEEMKR+YAL
Sbjct: 24 MKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKELNNCLHQYTNDTVLEEMKREYAL 83

Query: 61 QQDGK 66
          Q DGK
Sbjct: 84 QHDGK 88

[Close]

BLAST of Moc04g37530 vs. ExPASy TrEMBL
Match: A0A6J1FIP8 (COX assembly mitochondrial protein OS=Cucurbita moschata OX=3662 GN=LOC111444640 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL 60
          MKQKA+KECDHYAS+YAECAYGRTLSVV+KCR+QAKELN+CLHQYTNDTVLEEMKR+YA 
Sbjct: 24 MKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKELNNCLHQYTNDTVLEEMKREYAH 83

Query: 61 QQDGK 66
          Q DGK
Sbjct: 84 QHDGK 88

[Close]

BLAST of Moc04g37530 vs. ExPASy TrEMBL
Match: A0A6P3ZNL2 (COX assembly mitochondrial protein OS=Ziziphus jujuba OX=326968 GN=LOC107416569 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.9e-25
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL 60
          MKQKALKECDHYAS+YAECA GRTLSVVWKCR+QAKELN CLHQYTND VLEEMK+ Y L
Sbjct: 24 MKQKALKECDHYASKYAECATGRTLSVVWKCRTQAKELNHCLHQYTNDAVLEEMKKVYML 83

Query: 61 QQDGK 66
          QQDGK
Sbjct: 84 QQDGK 88

[Close]

BLAST of Moc04g37530 vs. ExPASy TrEMBL
Match: A0A1S3CA82 (COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103498594 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25
Identity = 55/65 (84.62%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL 60
          MKQKALKECDHYAS+YAECAYGRTLSV++KCR+QAKELN+CLH YTND+VL+EMKR+YAL
Sbjct: 24 MKQKALKECDHYASKYAECAYGRTLSVIFKCRNQAKELNNCLHLYTNDSVLDEMKREYAL 83

Query: 61 QQDGK 66
          Q DGK
Sbjct: 84 QHDGK 88

[Close]

BLAST of Moc04g37530 vs. TAIR 10
Match: AT5G16060.1 (Cytochrome c oxidase biogenesis protein Cmc1-like )

HSP 1 Score: 104.4 bits (259), Expect = 3.6e-23
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 1  MKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKELNSCLHQYTNDTVLEEMKRDYAL 60
          MK KAL ECD Y S+YA+CA GRT SVVW CR QA+ELN+CLHQ+TND VLEEMKR Y +
Sbjct: 25 MKAKALMECDQYVSKYAQCATGRTFSVVWTCRKQARELNTCLHQFTNDNVLEEMKRAYMV 84

Query: 61 QQDGK 66
          Q++GK
Sbjct: 85 QEEGK 89

The following BLAST results are available for this feature:

BLAST of Moc04g37530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133533.1	3.8e-30	100.00	uncharacterized protein DDB_G0275933 [Momordica charantia] >XP_022133534.1 uncha...	[more]
KAG6578501.1	3.3e-26	89.23	hypothetical protein SDJN03_22949, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022993759.1	3.3e-26	89.23	uncharacterized protein DDB_G0275933 [Cucurbita maxima] >KAG7016065.1 hypothetic...	[more]
XP_023549716.1	4.3e-26	89.23	uncharacterized protein DDB_G0275933 [Cucurbita pepo subsp. pepo]	[more]
XP_022938373.1	2.1e-25	87.69	uncharacterized protein DDB_G0275933 [Cucurbita moschata]	[more]

BLAST of Moc04g37530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q552P9	2.3e-06	36.21	Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum OX=44689 GN=DDB...	[more]
G2TRU5	3.7e-04	36.84	COX assembly mitochondrial protein 2 OS=Schizosaccharomyces pombe (strain 972 / ...	[more]

BLAST of Moc04g37530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BW91	1.8e-30	100.00	COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC11100609...	[more]
A0A6J1K100	1.6e-26	89.23	COX assembly mitochondrial protein OS=Cucurbita maxima OX=3661 GN=LOC111489669 P...	[more]
A0A6J1FIP8	1.0e-25	87.69	COX assembly mitochondrial protein OS=Cucurbita moschata OX=3662 GN=LOC111444640...	[more]
A0A6P3ZNL2	3.9e-25	87.69	COX assembly mitochondrial protein OS=Ziziphus jujuba OX=326968 GN=LOC107416569 ...	[more]
A0A1S3CA82	5.1e-25	84.62	COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103498594 PE=3 ...	[more]

BLAST of Moc04g37530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16060.1	3.6e-23	70.77	Cytochrome c oxidase biogenesis protein Cmc1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like	PFAM	PF08583	Cmc1	coord: 1..58 e-value: 1.0E-15 score: 57.6
IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like	PANTHER	PTHR22977	COX ASSEMBLY MITOCHONDRIAL PROTEIN	coord: 1..63
None	No IPR available	PANTHER	PTHR22977:SF5	COX ASSEMBLY MITOCHONDRIAL PROTEIN HOMOLOG	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g37530.1	Moc04g37530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion