Moc04g37010 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g37010
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr4: 27721630 .. 27721938 (+)
RNA-Seq Expression	Moc04g37010
Synteny	Moc04g37010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTGGTGTTCCTCTCTTCCAGCCATTGCAGGGCTTCGATTCTGATGAAGGCCAACGCCAGCTGCGGCTGCGGCGGCGGCGGAGAATGTTTGGGAATCTCGGAGGCGGTGGCGGCGGAGTTCATGGTGGGAAGCCACGTGGCGCGGTTTCTGGATTTTGAAGATAACAAACCGAAAACGGACGAGACGAAAAATCCTAATGTGCAGACGTGTCCGAGCGGCGCCGGAAACGCTGGAGGCGCCTGCAACGGCGACCCCAACAGTAAAAAGGACTGCCCCAAGTACACCGGCTCCGCCACCTGCTGA

mRNA sequence

ATGATGGTGGTGTTCCTCTCTTCCAGCCATTGCAGGGCTTCGATTCTGATGAAGGCCAACGCCAGCTGCGGCTGCGGCGGCGGCGGAGAATGTTTGGGAATCTCGGAGGCGGTGGCGGCGGAGTTCATGGTGGGAAGCCACGTGGCGCGGTTTCTGGATTTTGAAGATAACAAACCGAAAACGGACGAGACGAAAAATCCTAATGTGCAGACGTGTCCGAGCGGCGCCGGAAACGCTGGAGGCGCCTGCAACGGCGACCCCAACAGTAAAAAGGACTGCCCCAAGTACACCGGCTCCGCCACCTGCTGA

Coding sequence (CDS)

ATGATGGTGGTGTTCCTCTCTTCCAGCCATTGCAGGGCTTCGATTCTGATGAAGGCCAACGCCAGCTGCGGCTGCGGCGGCGGCGGAGAATGTTTGGGAATCTCGGAGGCGGTGGCGGCGGAGTTCATGGTGGGAAGCCACGTGGCGCGGTTTCTGGATTTTGAAGATAACAAACCGAAAACGGACGAGACGAAAAATCCTAATGTGCAGACGTGTCCGAGCGGCGCCGGAAACGCTGGAGGCGCCTGCAACGGCGACCCCAACAGTAAAAAGGACTGCCCCAAGTACACCGGCTCCGCCACCTGCTGA

Protein sequence

MMVVFLSSSHCRASILMKANASCGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCPSGAGNAGGACNGDPNSKKDCPKYTGSATC

Homology

[Close]

BLAST of Moc04g37010 vs. NCBI nr
Match: KAG6578548.1 (hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 9.6e-09
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 3   VVFLSSSHCRASILMKANASCGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTD 62
           ++  SS+  RAS L +ANA+ G             V  E +V   +ARFL+F++ K  TD
Sbjct: 19  IILCSSNSSRASSLGRANATYG------------EVEVELLVRREIARFLNFKNMKVYTD 78

Query: 63  ETKNPNVQTCPSGAGNAGGACNGDPNSKKDCPKYTGSATC 103
           +T+NP V++C +G GN  G C+G P +KK C  Y G++ C
Sbjct: 79  KTQNPFVKSCGNGPGNPMGDCSGSPTNKKHCNSYAGASAC 106

[Close]

BLAST of Moc04g37010 vs. NCBI nr
Match: KGN52519.1 (hypothetical protein Csa_008872 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-06
Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 1   MMVVFLSSSH-CRASILMKANASCGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKP 60
           M +  LSSS+ CR SILMKANA+ G             +  E ++   + R+L F+    
Sbjct: 18  MSITILSSSYSCRGSILMKANATLG-----------SVMTTELIIKHDITRYLIFKGATA 77

Query: 61  KTDETKNPNVQTCPSGAGNAGGACNGDPNSKKDCPKYTGSATC 103
            T  T +PN+ TC +GAGN    C G+ N+ + C  Y G   C
Sbjct: 78  VTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

[Close]

BLAST of Moc04g37010 vs. NCBI nr
Match: KAA0039429.1 (hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK00618.1 hypothetical protein E5676_scaffold169G002380 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-06
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 1   MMVVFLSSSH-CRASILMKANASCGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKP 60
           M +  LSSS+ CR S+LMKANA+ G        G+S     E ++   + RFL    +KP
Sbjct: 18  MSITILSSSYSCRGSVLMKANATYG--------GVS---TTEMIIYHDITRFLMPPGSKP 77

Query: 61  KTDETKNPNVQTCPSGAGNAGGACNGDPNSKKDCPKYTGSATC 103
            T  T  PN+  C +G GN  G C G+ N+++ C +Y  +  C
Sbjct: 78  VTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

[Close]

BLAST of Moc04g37010 vs. NCBI nr
Match: KGN52518.1 (hypothetical protein Csa_007870 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-05
Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 0


Query: 1   MMVVFLSSSH-CRASILMKANASCGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKP 60
           M++  L SSH CRAS+L+KANA+ G             + AE ++   V R+L ++    
Sbjct: 22  MLITILYSSHTCRASVLIKANATYG-----------GVMTAELLIYPDVTRYLMYDHADS 81

Query: 61  KTDETKNPNVQTCPSGAGNAGGACNGDPNSKKDCPKYTGSATC 103
           KT +TK+  V  C +G GN+   C G  ++KK C  Y     C
Sbjct: 82  KTGKTKDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

[Close]

BLAST of Moc04g37010 vs. ExPASy TrEMBL
Match: A0A0A0KUG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 1   MMVVFLSSSH-CRASILMKANASCGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKP 60
           M +  LSSS+ CR SILMKANA+ G             +  E ++   + R+L F+    
Sbjct: 18  MSITILSSSYSCRGSILMKANATLG-----------SVMTTELIIKHDITRYLIFKGATA 77

Query: 61  KTDETKNPNVQTCPSGAGNAGGACNGDPNSKKDCPKYTGSATC 103
            T  T +PN+ TC +GAGN    C G+ N+ + C  Y G   C
Sbjct: 78  VTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

[Close]

BLAST of Moc04g37010 vs. ExPASy TrEMBL
Match: A0A5D3BNE4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002380 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 1   MMVVFLSSSH-CRASILMKANASCGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKP 60
           M +  LSSS+ CR S+LMKANA+ G        G+S     E ++   + RFL    +KP
Sbjct: 18  MSITILSSSYSCRGSVLMKANATYG--------GVS---TTEMIIYHDITRFLMPPGSKP 77

Query: 61  KTDETKNPNVQTCPSGAGNAGGACNGDPNSKKDCPKYTGSATC 103
            T  T  PN+  C +G GN  G C G+ N+++ C +Y  +  C
Sbjct: 78  VTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

[Close]

BLAST of Moc04g37010 vs. ExPASy TrEMBL
Match: A0A0A0KSJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 0


Query: 1   MMVVFLSSSH-CRASILMKANASCGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKP 60
           M++  L SSH CRAS+L+KANA+ G             + AE ++   V R+L ++    
Sbjct: 22  MLITILYSSHTCRASVLIKANATYG-----------GVMTAELLIYPDVTRYLMYDHADS 81

Query: 61  KTDETKNPNVQTCPSGAGNAGGACNGDPNSKKDCPKYTGSATC 103
           KT +TK+  V  C +G GN+   C G  ++KK C  Y     C
Sbjct: 82  KTGKTKDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

The following BLAST results are available for this feature:

BLAST of Moc04g37010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578548.1	9.6e-09	39.00	hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN52519.1	2.6e-06	35.92	hypothetical protein Csa_008872 [Cucumis sativus]	[more]
KAA0039429.1	7.6e-06	36.89	hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK0061...	[more]
KGN52518.1	2.2e-05	34.95	hypothetical protein Csa_007870 [Cucumis sativus]	[more]

BLAST of Moc04g37010 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g37010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUG7	1.3e-06	35.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1	[more]
A0A5D3BNE4	3.7e-06	36.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KSJ4	1.1e-05	34.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1	[more]

BLAST of Moc04g37010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g37010.1	Moc04g37010.1	mRNA