Moc04g36880 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g36880
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTranscription factor UPBEAT1-like
Locationchr4: 27641106 .. 27641462 (+)
RNA-Seq ExpressionMoc04g36880
SyntenyMoc04g36880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTCCAAAACGAAGATTCTCCCAAATCCTCTCAGAAATGTCAGAAGAAGAATCAAAAGGAGGTTTTGCCGCCGTCCCTGCGCTTTCGGAGGCCGGAATCCCGTCAAATATGGCGAAACAACGTCGTCGTCGTCGCTGCCGTGCTCCTCCTCCGACGTGGCGGCTAAATTGGAGGCTCTGGAGAGCCTCATTCCGGCGCAAACTGCCGGCGAAGCCCGCAAAACGGAGCAGTTGTTCAAGGAAACTGCGGATTACATTGTTCTATTGAAAACCCAGGTCGTGATTTTGCAGAAGCTGGTCGATTTTTTTGGATCCAGCTGCAGTGACGACGCAGAAAACGCCGTCGTTTCATAG

mRNA sequence

ATGAGCTCCAAAACGAAGATTCTCCCAAATCCTCTCAGAAATGTCAGAAGAAGAATCAAAAGGAGGTTTTGCCGCCGTCCCTGCGCTTTCGGAGGCCGGAATCCCGTCAAATATGGCGAAACAACGTCGTCGTCGTCGCTGCCGTGCTCCTCCTCCGACGTGGCGGCTAAATTGGAGGCTCTGGAGAGCCTCATTCCGGCGCAAACTGCCGGCGAAGCCCGCAAAACGGAGCAGTTGTTCAAGGAAACTGCGGATTACATTGTTCTATTGAAAACCCAGGTCGTGATTTTGCAGAAGCTGGTCGATTTTTTTGGATCCAGCTGCAGTGACGACGCAGAAAACGCCGTCGTTTCATAG

Coding sequence (CDS)

ATGAGCTCCAAAACGAAGATTCTCCCAAATCCTCTCAGAAATGTCAGAAGAAGAATCAAAAGGAGGTTTTGCCGCCGTCCCTGCGCTTTCGGAGGCCGGAATCCCGTCAAATATGGCGAAACAACGTCGTCGTCGTCGCTGCCGTGCTCCTCCTCCGACGTGGCGGCTAAATTGGAGGCTCTGGAGAGCCTCATTCCGGCGCAAACTGCCGGCGAAGCCCGCAAAACGGAGCAGTTGTTCAAGGAAACTGCGGATTACATTGTTCTATTGAAAACCCAGGTCGTGATTTTGCAGAAGCTGGTCGATTTTTTTGGATCCAGCTGCAGTGACGACGCAGAAAACGCCGTCGTTTCATAG

Protein sequence

MSSKTKILPNPLRNVRRRIKRRFCRRPCAFGGRNPVKYGETTSSSSLPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCSDDAENAVVS
Homology
BLAST of Moc04g36880 vs. NCBI nr
Match: XP_022993697.1 (uncharacterized protein LOC111489609 [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 4.8e-20
Identity = 72/114 (63.16%), Postives = 81/114 (71.05%), Query Frame = 0

Query: 1   MSSKTKILPNPLRNVRRRIKRRFCRRPCAFGGRNPVKYGETTSSSSLPCSSS-------D 60
           M+ KT  L N     +R +     R P      NP +YGETTSSS  PCSSS       D
Sbjct: 1   MTPKTYTLTNLRTRTKRSLPDSAVRAP------NPHEYGETTSSS--PCSSSSDDDDDDD 60

Query: 61  VAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSS 108
           V+AKLEAL+SLIPAQ+A EAR+TEQLFKETADYIVLLKTQVVILQKLVDFFGS+
Sbjct: 61  VSAKLEALQSLIPAQSA-EARQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA 105

BLAST of Moc04g36880 vs. NCBI nr
Match: KAA0039441.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa] >TYK00630.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 6.3e-20
Identity = 73/129 (56.59%), Postives = 88/129 (68.22%), Query Frame = 0

Query: 1   MSSKTKILPNPLRNVRRR--------IKRRFCRRPCAFGGRNPVKYGETTSSSSLPCSSS 60
           MSSKT  LPNPLRN RRR         +RRF RR  A         G     S+L C  S
Sbjct: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNA---------GCRPGDSTLGC--S 60

Query: 61  DVAAKLEALESLIPAQTA---GEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCS 119
           +V+ KLEAL+SLIP Q+A   G+ R+ ++LFK+TADYIV+LKTQVVILQKLVDFFGS+CS
Sbjct: 61  EVSTKLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACS 117

BLAST of Moc04g36880 vs. NCBI nr
Match: KAG7016112.1 (hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.5 bits (267), Expect = 8.2e-20
Identity = 70/111 (63.06%), Postives = 79/111 (71.17%), Query Frame = 0

Query: 1   MSSKTKILPNPLRNVRRRI---KRRFCRRP-CAFGGRNPVKYGETTSSSSLPCSSSDVAA 60
           MS KT  L N     +R +   +RRF RR   A    NP + GETTSSS       DV+A
Sbjct: 1   MSPKTNTLTNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSA 60

Query: 61  KLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSS 108
           KLEAL+SLIPAQ+A E R+TEQLFKETADYIVLLKTQVVILQKLVDFFGS+
Sbjct: 61  KLEALQSLIPAQSA-EGRQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA 110

BLAST of Moc04g36880 vs. NCBI nr
Match: KAG6578552.1 (hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-19
Identity = 69/111 (62.16%), Postives = 79/111 (71.17%), Query Frame = 0

Query: 1   MSSKTKILPNPLRNVRRRI---KRRFCRRP-CAFGGRNPVKYGETTSSSSLPCSSSDVAA 60
           MS KT  L N     +R +   +RRF RR   A    NP + G+TTSSS       DV+A
Sbjct: 1   MSPKTNTLTNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGQTTSSSPFSDDDDDVSA 60

Query: 61  KLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSS 108
           KLEAL+SLIPAQ+A E R+TEQLFKETADYIVLLKTQVVILQKLVDFFGS+
Sbjct: 61  KLEALQSLIPAQSA-EGRQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA 110

BLAST of Moc04g36880 vs. NCBI nr
Match: XP_021605600.1 (uncharacterized protein LOC110610041 [Manihot esculenta] >OAY56902.1 hypothetical protein MANES_02G054200v8 [Manihot esculenta])

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 54/119 (45.38%), Postives = 77/119 (64.71%), Query Frame = 0

Query: 2   SSKTKILPNPLRNVRR----RIKRRFCRRPCAFGGRNPVKYGETTSSSSLPCSSSDVAAK 61
           +SK  +   P R++RR    R +R + RRPC      P +   TT++     +++ V+AK
Sbjct: 7   NSKISLKKTPRRSLRRTSISRRRRLYARRPC-----KPKRSWRTTTT-----TTTKVSAK 66

Query: 62  LEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCSDDAENAV 117
           LE L++LIPA   GE  K E LF+ETADYIVLLKTQV +LQ+LV+F+GS+ ++   NAV
Sbjct: 67  LETLKNLIPAHN-GEIIKAEHLFQETADYIVLLKTQVFVLQRLVEFYGSTTTEAETNAV 114

BLAST of Moc04g36880 vs. ExPASy TrEMBL
Match: A0A6J1JTK8 (uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-20
Identity = 72/114 (63.16%), Postives = 81/114 (71.05%), Query Frame = 0

Query: 1   MSSKTKILPNPLRNVRRRIKRRFCRRPCAFGGRNPVKYGETTSSSSLPCSSS-------D 60
           M+ KT  L N     +R +     R P      NP +YGETTSSS  PCSSS       D
Sbjct: 1   MTPKTYTLTNLRTRTKRSLPDSAVRAP------NPHEYGETTSSS--PCSSSSDDDDDDD 60

Query: 61  VAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSS 108
           V+AKLEAL+SLIPAQ+A EAR+TEQLFKETADYIVLLKTQVVILQKLVDFFGS+
Sbjct: 61  VSAKLEALQSLIPAQSA-EARQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA 105

BLAST of Moc04g36880 vs. ExPASy TrEMBL
Match: A0A5D3BNP5 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002510 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.1e-20
Identity = 73/129 (56.59%), Postives = 88/129 (68.22%), Query Frame = 0

Query: 1   MSSKTKILPNPLRNVRRR--------IKRRFCRRPCAFGGRNPVKYGETTSSSSLPCSSS 60
           MSSKT  LPNPLRN RRR         +RRF RR  A         G     S+L C  S
Sbjct: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNA---------GCRPGDSTLGC--S 60

Query: 61  DVAAKLEALESLIPAQTA---GEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCS 119
           +V+ KLEAL+SLIP Q+A   G+ R+ ++LFK+TADYIV+LKTQVVILQKLVDFFGS+CS
Sbjct: 61  EVSTKLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACS 117

BLAST of Moc04g36880 vs. ExPASy TrEMBL
Match: A0A2C9WB72 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G054200 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.1e-13
Identity = 54/119 (45.38%), Postives = 77/119 (64.71%), Query Frame = 0

Query: 2   SSKTKILPNPLRNVRR----RIKRRFCRRPCAFGGRNPVKYGETTSSSSLPCSSSDVAAK 61
           +SK  +   P R++RR    R +R + RRPC      P +   TT++     +++ V+AK
Sbjct: 7   NSKISLKKTPRRSLRRTSISRRRRLYARRPC-----KPKRSWRTTTT-----TTTKVSAK 66

Query: 62  LEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCSDDAENAV 117
           LE L++LIPA   GE  K E LF+ETADYIVLLKTQV +LQ+LV+F+GS+ ++   NAV
Sbjct: 67  LETLKNLIPAHN-GEIIKAEHLFQETADYIVLLKTQVFVLQRLVEFYGSTTTEAETNAV 114

BLAST of Moc04g36880 vs. ExPASy TrEMBL
Match: B9SJE1 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0525880 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 0

Query: 12  LRNVRRR---IKRRFCRRPCAFGGRNPVKYGETTSSSSLPCSSSDVAAKLEALESLIPAQ 71
           L   RRR   ++RR C++                +  S  CSSS V+ KLEAL++LIPA 
Sbjct: 26  LERRRRRLIHVRRRLCKK----------------AQRSSTCSSSKVSHKLEALKNLIPAN 85

Query: 72  TAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCSD-DAENAVV 118
             GE  K +QLF+ETADYIVLL+TQV +LQ+L+ F+GSS ++ D ENAV+
Sbjct: 86  N-GEIVKADQLFQETADYIVLLRTQVFVLQRLIQFYGSSTTEADNENAVI 118

BLAST of Moc04g36880 vs. ExPASy TrEMBL
Match: A0A5A7UT08 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001870 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.8e-11
Identity = 44/84 (52.38%), Postives = 63/84 (75.00%), Query Frame = 0

Query: 36  VKYGETTSSSSLPCSSSDVAAKLEALESLIPAQTAGE-ARKTEQLFKETADYIVLLKTQV 95
           V+ G    +  + C +SD++AKLE+L+SLIP+++  E  R+ E LFK+TADYIVLLK+QV
Sbjct: 26  VRGGRNHQNGGMAC-ASDLSAKLESLQSLIPSRSDEEGVRRAEDLFKQTADYIVLLKSQV 85

Query: 96  VILQKLVDFFGSSCSDDAENAVVS 119
            +LQ+L++F+G   SDD ENAV S
Sbjct: 86  FVLQRLIEFYG---SDDRENAVSS 105

BLAST of Moc04g36880 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07
Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 54  VAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCSDDAE 113
           V  KL AL+SL+P        +TE+LF+ETA+YIV L+TQVV+L+KL++ + +S SD  +
Sbjct: 39  VMEKLLALKSLLPPPVNVGGGETEELFQETAEYIVKLRTQVVVLKKLIEIYDNS-SDQKK 98

Query: 114 NAVV 118
           + V+
Sbjct: 99  DVVL 101

BLAST of Moc04g36880 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07
Identity = 39/102 (38.24%), Postives = 54/102 (52.94%), Query Frame = 0

Query: 31  GGRNPVKYGETTSSSSLPCSSSDVAAKLEALESLIP--------------AQTAGEARKT 90
           G R   K+G   +S          + KL+AL+SL+P               +      +T
Sbjct: 12  GRRTSKKFGNRRTS-----GGEKFSEKLQALKSLLPPPSKMTEQSRQDAYVEEDSSVGET 71

Query: 91  EQLFKETADYIVLLKTQVVILQKLVDFFGSSCSDDAENAVVS 119
           EQLF+ETADYIV L+ QVV+LQKL++ +GS  SD  E+  VS
Sbjct: 72  EQLFQETADYIVRLRGQVVVLQKLIEIYGS--SDQKEDNFVS 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022993697.14.8e-2063.16uncharacterized protein LOC111489609 [Cucurbita maxima][more]
KAA0039441.16.3e-2056.59transcription factor UPBEAT1-like [Cucumis melo var. makuwa] >TYK00630.1 transcr... [more]
KAG7016112.18.2e-2063.06hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6578552.11.8e-1962.16hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021605600.11.7e-1245.38uncharacterized protein LOC110610041 [Manihot esculenta] >OAY56902.1 hypothetica... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JTK82.3e-2063.16uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609... [more]
A0A5D3BNP53.1e-2056.59Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A2C9WB728.1e-1345.38Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G054200 PE=4 SV=... [more]
B9SJE12.6e-1147.27Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0525880 PE=4 SV=1[more]
A0A5A7UT085.8e-1152.38Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
AT3G29370.11.0e-0746.88unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G39240.11.0e-0738.24unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044660Transcription factor IBH1-likePANTHERPTHR33124TRANSCRIPTION FACTOR IBH1-LIKE 1coord: 44..116
NoneNo IPR availablePANTHERPTHR33124:SF70SUBFAMILY NOT NAMEDcoord: 44..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g36880.1Moc04g36880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated