Moc04g35840 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g35840
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Locationchr4: 26874754 .. 26876363 (+)
RNA-Seq ExpressionMoc04g35840
SyntenyMoc04g35840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGACAAATATCAAGTACATCATTACTATGAAGGGGTTCTGAAGTTCAGTGGAGAGAATTTCAGTTTTTGGAAGATGCAAGTAAAGGATCTTCTTACGTGCAAGAAGATACACAATACTTTGGGGGAGAGACCAGCGGATATGACAGACAAAGCTTGGAATGAGATGGATGAGCAGGCCGTTGCAAATATCAGAATGACATTATCAATGGGGGTATGCAGTCTCGTGGCGAAAGAGACGACTGCAAAAGAGTTGTTGAAGGCCTTGCAAGACAGGTATGAAAAACCTTCTGCCAATACAAAAATATTTCTATGGACCAAGTATTTTAACATCCACATGGAGGAGGGAACCTCAGTGAATTCCCACATTAATGAGCTCACCGATATCTTGAACAAATTAGAAGGGATGGGTGTCAAGATTGAGGAGGAGGTGAAAGCTATGAGGCTGTTGACGTCTTTCCCTTACAGTTGGGAGACGATTAAGACCGCGGTGTCGAATTCGCTAGGAGAAAATAGCTTGAAATTTTCAGCTATTTGTGATGCCGCCTTATCTGAGGAAGCCCGGAGAAAATTAGGAAAAATGTATGTAACTACTTCAGGGGCAGAAAATGAGGTTGAATCAGCTTTGGTAGCTCAGTTTAAGGGGAAGGGCAAGATGAAGTACAACGGGAAGCAACAACATAGGAATAATAGGGGTAGTGGGAATTCCAGTGAAGAAGTTGAATGTTTTTACTGTCATAAGAAGGGTCACTTCAAGAAACATTGCAGGAAGCTTAAAGAGGATCAGGAAAATGAGGATACTCTAAATTACGTGTCAGCGGAGGTGTTAGCTTGTATTGAAGGTAACACAACACCTGTAGACCGTTCATCAGAGTGGGTAGTGGACAGTGCAGCTTCGGTGCATGTAGCTTCAGACAGGAGTTGGTTCACGTCCTTTACTGCAGGAAATCATGGTGTGGTAAGGATGAGAAATGAGAGACTCTCCAAGATCAGAGGAATTGGGGATGTTCTTTTGAGGACTGACAATGGGACCGAACTAGTTTTGCATGGTGTCAGGTATGTACCCAGTTTCATGATGAATTTGATATCAGCAGGGAAGCTGGATGACGAAGGCTACAAAAGTGAGTTTGCAGAGAATAGATGGAAACCCATGAGGGGATCCGAGATAGTGGTTGTTGGCCACAGAAAAGCTTTGTGTTGAGGTTTAATATTGCCAGAGGATTAGAGAGACAGGTTATGCATAGAGCTGCAGATAATTCAGGGGGAGACTTGAATGAACCAGCAGCATTGACAGTCATGACAGATCAGGAGAATCTGCCATTAGTTCAAGTACAACAGCTGGGAAGTAGAGGAAAGGGAAAGAGGAAAAACTCAGTGAGGTGTTCGACAGACTGTCAGTTTCGAGCCCCAGTTGTCAGACGGACTAACGAGATGATGAAGTCGCATAGGCGAAATGGTGCATTGAGAAAGACTACAGTTGGTGCTGAGGTCGAGGGTGAAGTTTCTAGGGTGGCAACGGACTTGGGTGAGAGTGCCAAGTCATTAGGGAAATCTTTCTTCAAGAGTCGTTGGGTGCGAGTGAAGAAGGAAGCGTCGGAGACCACTTAG

mRNA sequence

ATGGGAGACAAATATCAAGTACATCATTACTATGAAGGGGTTCTGAAGTTCAGTGGAGAGAATTTCAGTTTTTGGAAGATGCAAGTAAAGGATCTTCTTACGTGCAAGAAGATACACAATACTTTGGGGGAGAGACCAGCGGATATGACAGACAAAGCTTGGAATGAGATGGATGAGCAGGCCGTTGCAAATATCAGAATGACATTATCAATGGGGGTATGCAGTCTCGTGGCGAAAGAGACGACTGCAAAAGAGTTGTTGAAGGCCTTGCAAGACAGGTATGAAAAACCTTCTGCCAATACAAAAATATTTCTATGGACCAAGTATTTTAACATCCACATGGAGGAGGGAACCTCAGTGAATTCCCACATTAATGAGCTCACCGATATCTTGAACAAATTAGAAGGGATGGGTGTCAAGATTGAGGAGGAGGTGAAAGCTATGAGGCTGTTGACGTCTTTCCCTTACAGTTGGGAGACGATTAAGACCGCGGTGTCGAATTCGCTAGGAGAAAATAGCTTGAAATTTTCAGCTATTTGTGATGCCGCCTTATCTGAGGAAGCCCGGAGAAAATTAGGAAAAATGTATGTAACTACTTCAGGGGCAGAAAATGAGGTTGAATCAGCTTTGGTAGCTCAGTTTAAGGGGAAGGGCAAGATGAAGTACAACGGGAAGCAACAACATAGGAATAATAGGGGTAGTGGGAATTCCAGTGAAGAAGTTGAATGTTTTTACTGTCATAAGAAGGGTCACTTCAAGAAACATTGCAGGAAGCTTAAAGAGGATCAGGAAAATGAGGATACTCTAAATTACGTGTCAGCGGAGGTGTTAGCTTGTATTGAAGGATTAGAGAGACAGGTTATGCATAGAGCTGCAGATAATTCAGGGGGAGACTTGAATGAACCAGCAGCATTGACAGTCATGACAGATCAGGAGAATCTGCCATTAGTTCAAGTACAACAGCTGGGAAGTAGAGGAAAGGGAAAGAGGAAAAACTCAGTGAGGTGTTCGACAGACTGTCAGTTTCGAGCCCCAGTTGTCAGACGGACTAACGAGATGATGAAGTCGCATAGGCGAAATGGTGCATTGAGAAAGACTACAGTTGGTGCTGAGGTCGAGGGTGAAGTTTCTAGGGTGGCAACGGACTTGGGTGAGAGTGCCAAGTCATTAGGGAAATCTTTCTTCAAGAGTCGTTGGGTGCGAGTGAAGAAGGAAGCGTCGGAGACCACTTAG

Coding sequence (CDS)

ATGGGAGACAAATATCAAGTACATCATTACTATGAAGGGGTTCTGAAGTTCAGTGGAGAGAATTTCAGTTTTTGGAAGATGCAAGTAAAGGATCTTCTTACGTGCAAGAAGATACACAATACTTTGGGGGAGAGACCAGCGGATATGACAGACAAAGCTTGGAATGAGATGGATGAGCAGGCCGTTGCAAATATCAGAATGACATTATCAATGGGGGTATGCAGTCTCGTGGCGAAAGAGACGACTGCAAAAGAGTTGTTGAAGGCCTTGCAAGACAGGTATGAAAAACCTTCTGCCAATACAAAAATATTTCTATGGACCAAGTATTTTAACATCCACATGGAGGAGGGAACCTCAGTGAATTCCCACATTAATGAGCTCACCGATATCTTGAACAAATTAGAAGGGATGGGTGTCAAGATTGAGGAGGAGGTGAAAGCTATGAGGCTGTTGACGTCTTTCCCTTACAGTTGGGAGACGATTAAGACCGCGGTGTCGAATTCGCTAGGAGAAAATAGCTTGAAATTTTCAGCTATTTGTGATGCCGCCTTATCTGAGGAAGCCCGGAGAAAATTAGGAAAAATGTATGTAACTACTTCAGGGGCAGAAAATGAGGTTGAATCAGCTTTGGTAGCTCAGTTTAAGGGGAAGGGCAAGATGAAGTACAACGGGAAGCAACAACATAGGAATAATAGGGGTAGTGGGAATTCCAGTGAAGAAGTTGAATGTTTTTACTGTCATAAGAAGGGTCACTTCAAGAAACATTGCAGGAAGCTTAAAGAGGATCAGGAAAATGAGGATACTCTAAATTACGTGTCAGCGGAGGTGTTAGCTTGTATTGAAGGATTAGAGAGACAGGTTATGCATAGAGCTGCAGATAATTCAGGGGGAGACTTGAATGAACCAGCAGCATTGACAGTCATGACAGATCAGGAGAATCTGCCATTAGTTCAAGTACAACAGCTGGGAAGTAGAGGAAAGGGAAAGAGGAAAAACTCAGTGAGGTGTTCGACAGACTGTCAGTTTCGAGCCCCAGTTGTCAGACGGACTAACGAGATGATGAAGTCGCATAGGCGAAATGGTGCATTGAGAAAGACTACAGTTGGTGCTGAGGTCGAGGGTGAAGTTTCTAGGGTGGCAACGGACTTGGGTGAGAGTGCCAAGTCATTAGGGAAATCTTTCTTCAAGAGTCGTTGGGTGCGAGTGAAGAAGGAAGCGTCGGAGACCACTTAG

Protein sequence

MGDKYQVHHYYEGVLKFSGENFSFWKMQVKDLLTCKKIHNTLGERPADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQDRYEKPSANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEGMGVKIEEEVKAMRLLTSFPYSWETIKTAVSNSLGENSLKFSAICDAALSEEARRKLGKMYVTTSGAENEVESALVAQFKGKGKMKYNGKQQHRNNRGSGNSSEEVECFYCHKKGHFKKHCRKLKEDQENEDTLNYVSAEVLACIEGLERQVMHRAADNSGGDLNEPAALTVMTDQENLPLVQVQQLGSRGKGKRKNSVRCSTDCQFRAPVVRRTNEMMKSHRRNGALRKTTVGAEVEGEVSRVATDLGESAKSLGKSFFKSRWVRVKKEASETT
Homology
BLAST of Moc04g35840 vs. NCBI nr
Match: KAG7584790.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 194.9 bits (494), Expect = 1.4e-45
Identity = 104/257 (40.47%), Postives = 152/257 (59.14%), Query Frame = 0

Query: 13  GVLKFSGENFSFWKMQVKDLLTCKKIHNTLGERPADMTDKAWNEMDEQAVANIRMTLSMG 72
           G+ KF G +F+FW+MQ++D L  KK+H  L  +P  M  + W+ +D Q +  IR+TLS  
Sbjct: 10  GIGKFDGTDFAFWRMQIEDYLYGKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSKN 69

Query: 73  VCSLVAKETTAKELLKALQDRYEKPSANTKIFLWTKYFNIHMEEGTSVNSHINELTDILN 132
           V   VAKE T + L+K L D YEKPSAN K+FL  K F++ MEEG  V +H+NE   I+N
Sbjct: 70  VAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVN 129

Query: 133 KLEGMGVKIEEEVKAMRLLTSFPYSWETIKTAVSNSLGENSLKFSAICDAALSEEARRKL 192
           +L  + ++ ++EV+A+ LL S P SWE ++ AVSNS+G   LKF  + D  L EE RR  
Sbjct: 130 QLSSVEIEFDDEVRALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRR-- 189

Query: 193 GKMYVTTSGAENEVESALVAQFKGKGKMKYN---GKQQHRNNRGSGNSSEEVECFYCHKK 252
                     E  + SA   + +G+ + + N   G+ + RN +G   S + VEC+ C K 
Sbjct: 190 ------IDTGETSMSSAFNVENRGRDQNRRNQNRGRSKSRNGKGQSKSRKPVECWNCGKT 249

Query: 253 GHFKKHCRKLKEDQENE 267
           GHFK +C    + + N+
Sbjct: 250 GHFKSNCWAPPKKENNK 258

BLAST of Moc04g35840 vs. NCBI nr
Match: KAG7561662.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 193.7 bits (491), Expect = 3.0e-45
Identity = 103/257 (40.08%), Postives = 151/257 (58.75%), Query Frame = 0

Query: 13  GVLKFSGENFSFWKMQVKDLLTCKKIHNTLGERPADMTDKAWNEMDEQAVANIRMTLSMG 72
           G+ KF G +F+FW+MQ++D L  KK+H  L  +P  M  + W+ +D Q +  IR+TLS  
Sbjct: 10  GIGKFDGTDFAFWRMQIEDYLYGKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSKN 69

Query: 73  VCSLVAKETTAKELLKALQDRYEKPSANTKIFLWTKYFNIHMEEGTSVNSHINELTDILN 132
           V   VAKE T + L+K L D YEKPSAN K+FL  K F++ MEEG  V +H+NE   I+N
Sbjct: 70  VAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVN 129

Query: 133 KLEGMGVKIEEEVKAMRLLTSFPYSWETIKTAVSNSLGENSLKFSAICDAALSEEARRKL 192
           +L  + ++ ++EV+A+ L+ S P SWE ++ AVSNS+G   LKF  + D  L EE RR  
Sbjct: 130 QLSSVEIEFDDEVRALILIASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRR-- 189

Query: 193 GKMYVTTSGAENEVESALVAQFKGKGKMKYN---GKQQHRNNRGSGNSSEEVECFYCHKK 252
                     E    SA   + +G+ + + N   G+ + RN +G   S + VEC+ C K 
Sbjct: 190 ------IDTGETSTSSAFNVENRGRDQNRRNQNRGRSKSRNGKGQSKSRKPVECWNCGKT 249

Query: 253 GHFKKHCRKLKEDQENE 267
           GHFK +C    + + N+
Sbjct: 250 GHFKSNCWAPPKKENNK 258

BLAST of Moc04g35840 vs. NCBI nr
Match: KAG7593230.1 (Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-44
Identity = 102/244 (41.80%), Postives = 145/244 (59.43%), Query Frame = 0

Query: 13  GVLKFSGENFSFWKMQVKDLLTCKKIHNTLGERPADMTDKAWNEMDEQAVANIRMTLSMG 72
           G+ KF G +F+FW+MQ++D L  KK+H  L  +P  M  + W+ +D Q +  IR+TLS  
Sbjct: 10  GIGKFDGTDFAFWRMQIEDYLYGKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSKN 69

Query: 73  VCSLVAKETTAKELLKALQDRYEKPSANTKIFLWTKYFNIHMEEGTSVNSHINELTDILN 132
           V   VAKE T + L+K L D YEKPSAN K+FL  K F++ MEEG  V +H+NE   I+N
Sbjct: 70  VAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVN 129

Query: 133 KLEGMGVKIEEEVKAMRLLTSFPYSWETIKTAVSNSLGENSLKFSAICDAALSEEARRKL 192
           +L  + ++ ++EV+A+ LL S P SWE ++ AVSNS+G   LKF  + D  L EE RR  
Sbjct: 130 QLSSVEIEFDDEVRALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRR-- 189

Query: 193 GKMYVTTSGAENEVESALVAQFKGKGKMKYN---GKQQHRNNRGSGNSSEEVECFYCHKK 252
                     E    SA   + +G+ + + N   G+ + RN +G   S + VEC+ C K 
Sbjct: 190 ------IDTGETSTSSAFNVENRGRDQNRRNQNRGRSKSRNGKGQSKSRKPVECWNCGKT 245

Query: 253 GHFK 254
           GHFK
Sbjct: 250 GHFK 245

BLAST of Moc04g35840 vs. NCBI nr
Match: BBH05460.1 (hypothetical protein Prudu_016848 [Prunus dulcis])

HSP 1 Score: 191.0 bits (484), Expect = 2.0e-44
Identity = 106/263 (40.30%), Postives = 149/263 (56.65%), Query Frame = 0

Query: 16  KFSGENFSFWKMQVKDLLTCKKIHNTLGE-RPADMTDKAWNEMDEQAVANIRMTLSMGVC 75
           KF G +F FWKMQ++D L  KK++  L E +P  M D+ W  +D QA+  IR+TLS  V 
Sbjct: 12  KFDGADFGFWKMQIEDYLYQKKLYQPLSENKPEGMNDEDWTLLDRQALGVIRLTLSRNVA 71

Query: 76  SLVAKETTAKELLKALQDRYEKPSANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKL 135
             +AKE T   L+ AL   YEKPSA+ K+ L  + FN+ M EG SV  H+NEL  +  +L
Sbjct: 72  FNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMTEGASVAQHLNELNTVTTQL 131

Query: 136 EGMGVKIEEEVKAMRLLTSFPYSWETIKTAVSNSLGENSLKFSAICDAALSEEARRKLGK 195
             +G++ +EEV+A+ LL+S P SW    TAVS+S G N L F  + D  LSEE RR+   
Sbjct: 132 SSVGIEFDEEVRALILLSSLPESWNATVTAVSSSSGSNKLTFDDVRDLVLSEEIRRRESG 191

Query: 196 MYVTTSGAENEVESALVAQFKGKGKMKYNGKQQHR----NNRGSGNSSEEVECFYCHKKG 255
              T+S    E       +  G+G+  Y G+ + R     N  + +SS+ VEC+ C K G
Sbjct: 192 ESSTSSVLHTESRGRNSTRGNGRGRSNYRGRSKDRRSKSRNPNNSHSSKTVECWNCGKIG 251

Query: 256 HFKKHCRKLKEDQENEDTLNYVS 274
           H+K  C+   +D E +   N  S
Sbjct: 252 HYKNQCKSASKDHEAKAEANVTS 274

BLAST of Moc04g35840 vs. NCBI nr
Match: BBG97541.1 (disease resistance family protein / LRR family protein [Prunus dulcis])

HSP 1 Score: 191.0 bits (484), Expect = 2.0e-44
Identity = 106/263 (40.30%), Postives = 149/263 (56.65%), Query Frame = 0

Query: 16  KFSGENFSFWKMQVKDLLTCKKIHNTLGE-RPADMTDKAWNEMDEQAVANIRMTLSMGVC 75
           KF G +F FWKMQ++D L  KK++  L E +P  M D+ W  +D QA+  IR+TLS  V 
Sbjct: 557 KFDGADFGFWKMQIEDYLYQKKLYQPLSENKPEGMNDEDWTLLDRQALGVIRLTLSRNVA 616

Query: 76  SLVAKETTAKELLKALQDRYEKPSANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKL 135
             +AKE T   L+ AL   YEKPSA+ K+ L  + FN+ M EG SV  H+NEL  +  +L
Sbjct: 617 FNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMTEGASVAQHLNELNTVTTQL 676

Query: 136 EGMGVKIEEEVKAMRLLTSFPYSWETIKTAVSNSLGENSLKFSAICDAALSEEARRKLGK 195
             +G++ +EEV+A+ LL+S P SW    TAVS+S G N L F  + D  LSEE RR+   
Sbjct: 677 SSVGIEFDEEVRALILLSSLPESWNATVTAVSSSSGSNKLTFDDVRDLVLSEEIRRRESG 736

Query: 196 MYVTTSGAENEVESALVAQFKGKGKMKYNGKQQHR----NNRGSGNSSEEVECFYCHKKG 255
              T+S    E       +  G+G+  Y G+ + R     N  + +SS+ VEC+ C K G
Sbjct: 737 ESSTSSVLHTESRGRNSTRGNGRGRSNYRGRSKDRRSKSRNPNNSHSSKTVECWNCGKIG 796

Query: 256 HFKKHCRKLKEDQENEDTLNYVS 274
           H+K  C+   +D E +   N  S
Sbjct: 797 HYKNQCKSASKDHEAKAEANVTS 819

BLAST of Moc04g35840 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-25
Identity = 82/267 (30.71%), Postives = 144/267 (53.93%), Query Frame = 0

Query: 14  VLKFSGEN-FSFWKMQVKDLLTCKKIHNTL---GERPADMTDKAWNEMDEQAVANIRMTL 73
           V KF+G+N FS W+ +++DLL  + +H  L    ++P  M  + W ++DE+A + IR+ L
Sbjct: 8   VAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHL 67

Query: 74  SMGVCSLVAKETTAKELLKALQDRYEKPSANTKIFLWTKYFNIHMEEGTSVNSHINELTD 133
           S  V + +  E TA+ +   L+  Y   +   K++L  + + +HM EGT+  SH+N    
Sbjct: 68  SDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNG 127

Query: 134 ILNKLEGMGVKIEEEVKAMRLLTSFPYSWETIKTAVSNSLGENSLKFSAICDAALSEEAR 193
           ++ +L  +GVKIEEE KA+ LL S P S++ + T + +  G+ +++   +  A L  E  
Sbjct: 128 LITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEKM 187

Query: 194 RKLGKMYVTTSGAENEVESALVAQFKGKGKMKYN---GKQQHRNNRGSGNSSEEVECFYC 253
           RK           EN+ + AL+ + +G+   + +   G+   R    + + S    C+ C
Sbjct: 188 RK---------KPENQGQ-ALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNC 247

Query: 254 HKKGHFKKHC---RKLKED---QENED 268
           ++ GHFK+ C   RK K +   Q+N+D
Sbjct: 248 NQPGHFKRDCPNPRKGKGETSGQKNDD 262

BLAST of Moc04g35840 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-14
Identity = 69/299 (23.08%), Postives = 139/299 (46.49%), Query Frame = 0

Query: 17  FSGENFSFWKMQVKDLLTCKKIHNTLGERPADMTDKAWNEMDEQAVANIRMTLSMGVCSL 76
           F GE ++ WK +++ LL  + +   +     +  D +W + +  A + I   LS    + 
Sbjct: 11  FDGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTIIEYLSDSFLNF 70

Query: 77  VAKETTAKELLKALQDRYEKPSANTKIFLWTKYFNIHMEEGTSVNSHINELTDILNKLEG 136
              + TA+++L+ L   YE+ S  +++ L  +  ++ +    S+ SH +   +++++L  
Sbjct: 71  ATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLA 130

Query: 137 MGVKIEEEVKAMRLLTSFPYSWETIKTAVSNSLGENSLKFSAICDAALSEEARRKLGKMY 196
            G KIEE  K   LL + P  ++ I TA+  +L E +L  + + +  L +E + K     
Sbjct: 131 AGAKIEEMDKISHLLITLPSCYDGIITAI-ETLSEENLTLAFVKNRLLDQEIKIKNDH-- 190

Query: 197 VTTSGAENEVESALVAQFKGKGKMK-YNGKQQHRNNRGSGNSSEEVECFYCHKKGHFKKH 256
              +    +V +A+V       K   +  +         GNS  +V+C +C ++GH KK 
Sbjct: 191 ---NDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHIKKD 250

Query: 257 CRKLKE--DQENEDTLNYVSAEVLACIEGLERQVMHRAA-DNSGGDLNEPAALTVMTDQ 312
           C   K   + +N++    V       I  + ++V + +  DN G  L+  A+  ++ D+
Sbjct: 251 CFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCGFVLDSGASDHLINDE 303

BLAST of Moc04g35840 vs. ExPASy TrEMBL
Match: A0A2N9IKI1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31378 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.5e-47
Identity = 112/267 (41.95%), Postives = 160/267 (59.93%), Query Frame = 0

Query: 13  GVLKFSGENFSFWKMQVKDLLTCKKIH-NTLGERPADMTDKAWNEMDEQAVANIRMTLSM 72
           G+ KF G +F +W+MQ++D L  KK+H   LGE+P DM D  W  +D Q +  IR+TLS 
Sbjct: 10  GIEKFDGTDFGYWRMQIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLSR 69

Query: 73  GVCSLVAKETTAKELLKALQDRYEKPSANTKIFLWTKYFNIHMEEGTSVNSHINELTDIL 132
            V   V KE T  EL+ AL   YEKPSAN K+ L  K FN+ M EGT+V  H+NE   I 
Sbjct: 70  TVAHNVVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTIT 129

Query: 133 NKLEGMGVKIEEEVKAMRLLTSFPYSWETIKTAVSNSLGENSLKFSAICDAALSEEARRK 192
           N+L  + ++ ++E++A+ +L S P SWE ++ AVSNS G+  LK++ I D  L EE RR+
Sbjct: 130 NQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRR 189

Query: 193 LGKMYVTTSGAENEVESALVAQFKGKGK-MKYN-GKQQHRNNRGSGNSSEEVECFYCHKK 252
                   +G  +   SAL  + +G+GK   YN G+ + R  R       ++EC+ C K 
Sbjct: 190 -------DAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKT 249

Query: 253 GHFKKHCRKLKEDQENEDTLNYVSAEV 277
           GH +K+C +LK+  EN D+ N V+ EV
Sbjct: 250 GHIRKNCWELKKKNEN-DSANVVTEEV 268

BLAST of Moc04g35840 vs. ExPASy TrEMBL
Match: A0A2N9GHK9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26945 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.5e-47
Identity = 112/267 (41.95%), Postives = 160/267 (59.93%), Query Frame = 0

Query: 13  GVLKFSGENFSFWKMQVKDLLTCKKIH-NTLGERPADMTDKAWNEMDEQAVANIRMTLSM 72
           G+ KF G +F +W+MQ++D L  KK+H   LGE+P DM D  W  +D Q +  IR+TLS 
Sbjct: 10  GIEKFDGTDFGYWRMQIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLSR 69

Query: 73  GVCSLVAKETTAKELLKALQDRYEKPSANTKIFLWTKYFNIHMEEGTSVNSHINELTDIL 132
            V   V KE T  EL+ AL   YEKPSAN K+ L  K FN+ M EGT+V  H+NE   I 
Sbjct: 70  TVAHNVVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTIT 129

Query: 133 NKLEGMGVKIEEEVKAMRLLTSFPYSWETIKTAVSNSLGENSLKFSAICDAALSEEARRK 192
           N+L  + ++ ++E++A+ +L S P SWE ++ AVSNS G+  LK++ I D  L EE RR+
Sbjct: 130 NQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRR 189

Query: 193 LGKMYVTTSGAENEVESALVAQFKGKGK-MKYN-GKQQHRNNRGSGNSSEEVECFYCHKK 252
                   +G  +   SAL  + +G+GK   YN G+ + R  R       ++EC+ C K 
Sbjct: 190 -------DAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKT 249

Query: 253 GHFKKHCRKLKEDQENEDTLNYVSAEV 277
           GH +K+C +LK+  EN D+ N V+ EV
Sbjct: 250 GHIRKNCWELKKKNEN-DSANVVTEEV 268

BLAST of Moc04g35840 vs. ExPASy TrEMBL
Match: A0A2N9J3Y8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59166 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.5e-47
Identity = 112/267 (41.95%), Postives = 160/267 (59.93%), Query Frame = 0

Query: 13  GVLKFSGENFSFWKMQVKDLLTCKKIH-NTLGERPADMTDKAWNEMDEQAVANIRMTLSM 72
           G+ KF G +F +W+MQ++D L  KK+H   LGE+P DM D  W  +D Q +  IR+TLS 
Sbjct: 10  GIEKFDGTDFGYWRMQIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLSR 69

Query: 73  GVCSLVAKETTAKELLKALQDRYEKPSANTKIFLWTKYFNIHMEEGTSVNSHINELTDIL 132
            V   V KE T  EL+ AL   YEKPSAN K+ L  K FN+ M EGT+V  H+NE   I 
Sbjct: 70  TVAHNVVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTIT 129

Query: 133 NKLEGMGVKIEEEVKAMRLLTSFPYSWETIKTAVSNSLGENSLKFSAICDAALSEEARRK 192
           N+L  + ++ ++E++A+ +L S P SWE ++ AVSNS G+  LK++ I D  L EE RR+
Sbjct: 130 NQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRR 189

Query: 193 LGKMYVTTSGAENEVESALVAQFKGKGK-MKYN-GKQQHRNNRGSGNSSEEVECFYCHKK 252
                   +G  +   SAL  + +G+GK   YN G+ + R  R       ++EC+ C K 
Sbjct: 190 -------DAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKT 249

Query: 253 GHFKKHCRKLKEDQENEDTLNYVSAEV 277
           GH +K+C +LK+  EN D+ N V+ EV
Sbjct: 250 GHIRKNCWELKKKNEN-DSANVVTEEV 268

BLAST of Moc04g35840 vs. ExPASy TrEMBL
Match: A0A2N9G6Q3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22753 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.5e-47
Identity = 112/267 (41.95%), Postives = 160/267 (59.93%), Query Frame = 0

Query: 13  GVLKFSGENFSFWKMQVKDLLTCKKIH-NTLGERPADMTDKAWNEMDEQAVANIRMTLSM 72
           G+ KF G +F +W+MQ++D L  KK+H   LGE+P DM D  W  +D Q +  IR+TLS 
Sbjct: 10  GIEKFDGTDFGYWRMQIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLSR 69

Query: 73  GVCSLVAKETTAKELLKALQDRYEKPSANTKIFLWTKYFNIHMEEGTSVNSHINELTDIL 132
            V   V KE T  EL+ AL   YEKPSAN K+ L  K FN+ M EGT+V  H+NE   I 
Sbjct: 70  TVAHNVVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTIT 129

Query: 133 NKLEGMGVKIEEEVKAMRLLTSFPYSWETIKTAVSNSLGENSLKFSAICDAALSEEARRK 192
           N+L  + ++ ++E++A+ +L S P SWE ++ AVSNS G+  LK++ I D  L EE RR+
Sbjct: 130 NQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRR 189

Query: 193 LGKMYVTTSGAENEVESALVAQFKGKGK-MKYN-GKQQHRNNRGSGNSSEEVECFYCHKK 252
                   +G  +   SAL  + +G+GK   YN G+ + R  R       ++EC+ C K 
Sbjct: 190 -------DAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKT 249

Query: 253 GHFKKHCRKLKEDQENEDTLNYVSAEV 277
           GH +K+C +LK+  EN D+ N V+ EV
Sbjct: 250 GHIRKNCWELKKKNEN-DSANVVTEEV 268

BLAST of Moc04g35840 vs. ExPASy TrEMBL
Match: A0A2N9JBD5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61661 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.5e-47
Identity = 112/267 (41.95%), Postives = 160/267 (59.93%), Query Frame = 0

Query: 13  GVLKFSGENFSFWKMQVKDLLTCKKIH-NTLGERPADMTDKAWNEMDEQAVANIRMTLSM 72
           G+ KF G +F +W+MQ++D L  KK+H   LGE+P DM D  W  +D Q +  IR+TLS 
Sbjct: 10  GIEKFDGTDFGYWRMQIEDYLYGKKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLSR 69

Query: 73  GVCSLVAKETTAKELLKALQDRYEKPSANTKIFLWTKYFNIHMEEGTSVNSHINELTDIL 132
            V   V KE T  EL+ AL   YEKPSAN K+ L  K FN+ M EGT+V  H+NE   I 
Sbjct: 70  TVAHNVVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTIT 129

Query: 133 NKLEGMGVKIEEEVKAMRLLTSFPYSWETIKTAVSNSLGENSLKFSAICDAALSEEARRK 192
           N+L  + ++ ++E++A+ +L S P SWE ++ AVSNS G+  LK++ I D  L EE RR+
Sbjct: 130 NQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRR 189

Query: 193 LGKMYVTTSGAENEVESALVAQFKGKGK-MKYN-GKQQHRNNRGSGNSSEEVECFYCHKK 252
                   +G  +   SAL  + +G+GK   YN G+ + R  R       ++EC+ C K 
Sbjct: 190 -------DAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKT 249

Query: 253 GHFKKHCRKLKEDQENEDTLNYVSAEV 277
           GH +K+C +LK+  EN D+ N V+ EV
Sbjct: 250 GHIRKNCWELKKKNEN-DSANVVTEEV 268

BLAST of Moc04g35840 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-11
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 16  KFSGENFSFWKMQVKDLLTCKKIHNTLGERPADMTDKAWNEMDEQAVANIRMTLSMGVCS 75
           K  G ++SF +M+++D L  KK+H  LG++   M+   WN +  Q +  IR+T+S  +  
Sbjct: 8   KVDGTSYSFCRMKIEDYLYGKKLHQPLGKKVETMSQDDWNILYRQVLDVIRLTISKNIAH 67

Query: 76  LVAKETTAKELLKALQDRYEKPSANTKI 104
            VAKE +   L+K L D Y+KPS N  +
Sbjct: 68  NVAKEKSPDGLMKVLSDIYKKPSTNNTV 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7584790.11.4e-4540.47Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa][more]
KAG7561662.13.0e-4540.08Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa][more]
KAG7593230.11.5e-4441.80Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa][more]
BBH05460.12.0e-4440.30hypothetical protein Prudu_016848 [Prunus dulcis][more]
BBG97541.12.0e-4440.30disease resistance family protein / LRR family protein [Prunus dulcis][more]
Match NameE-valueIdentityDescription
P109782.1e-2530.71Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041461.3e-1423.08Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Match NameE-valueIdentityDescription
A0A2N9IKI13.5e-4741.95Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31378 PE=4 SV=1[more]
A0A2N9GHK93.5e-4741.95Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26945 PE=4 SV=1[more]
A0A2N9J3Y83.5e-4741.95Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59166 PE=4 SV=1[more]
A0A2N9G6Q33.5e-4741.95Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22753 PE=4 SV=1[more]
A0A2N9JBD53.5e-4741.95Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61661 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G29785.11.8e-1137.50unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 54..191
e-value: 2.9E-29
score: 101.6
NoneNo IPR availableGENE3D4.10.60.10coord: 217..269
e-value: 3.7E-7
score: 31.9
NoneNo IPR availablePANTHERPTHR34676:SF1ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATEDcoord: 15..281
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 15..281
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 243..258
score: 8.910993
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 223..265

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g35840.1Moc04g35840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding