Moc04g32890 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g32890
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr4: 24747443 .. 24748154 (-)
RNA-Seq Expression	Moc04g32890
Synteny	Moc04g32890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTAGTATGAGAACAAAACAGGGGAAAATAGCCTCACATGCAAAAGTCCAAACGGCAGCCCCCAAGGGATTTAACCGCGGTTAGAAGAGTTAACTCAACCAGGGTTAAATACTGGAGATCGTGTTAAGTCTCCTCCTTCCCCCTGGGATTTTACTGTTTGTCTTTTGCATTTGAGGCCCCACCATTTTCTCTCTCTCTCTCCTCTTTCTCTTTCTCTCTCTAGTTTCAGAGGAGAGGATAACAACAAAAGCCTCAGCACCGTCACTTCGTTTCTCTGTGTTCTGAGAGATTCAGTGGAGAGGTCAGAGTTCGGAGGAAGACTTTCAATGGCTTACGGAAGGTCAGGTAAAAATCTCGGCAACGGTAGCATGGTGTTCGTTCTCGTACAATTTCTTTTGTTTCTGGTTAATTGTGTTGATAATTGAATTTGATTAATGGAGCTTGGAATTGCGGAGTGTTTTCGTTTTTCAATCGAATTTGTTGGTGCCTGGTTTTTCTAATGAGTTGTTTTAGTTTTGTTTGTGTTGATCTCCTGCTGCTGTTGTTGAGGCCGGAGTTCGCGGTTGGAGGTTTTTGATTCTTCTGAATTGTTTGTAATTTACTGTGATATGCGTTTTTTTTTTCTAGGTATAGGCGTTTCGTTTGCTATTCTTCTGCTGTCTTTCTTTGCGAGTTCTGCAACTTGTTCTCTTCTTCAACGCTTTGA

mRNA sequence

ATGGATTTTAGTATGAGAACAAAACAGGGGAAAATAGCCTCACATGCAAAAGTCCAAACGGCAGCCCCCAAGGGATTTAACCGCGGAGAGGATAACAACAAAAGCCTCAGCACCGTCACTTCGTTTCTCTGTGTTCTGAGAGATTCAGTGGAGAGGTCAGAGTTCGGAGGAAGACTTTCAATGGCTTACGGAAGGTATAGGCGTTTCGTTTGCTATTCTTCTGCTGTCTTTCTTTGCGAGTTCTGCAACTTGTTCTCTTCTTCAACGCTTTGA

Coding sequence (CDS)

ATGGATTTTAGTATGAGAACAAAACAGGGGAAAATAGCCTCACATGCAAAAGTCCAAACGGCAGCCCCCAAGGGATTTAACCGCGGAGAGGATAACAACAAAAGCCTCAGCACCGTCACTTCGTTTCTCTGTGTTCTGAGAGATTCAGTGGAGAGGTCAGAGTTCGGAGGAAGACTTTCAATGGCTTACGGAAGGTATAGGCGTTTCGTTTGCTATTCTTCTGCTGTCTTTCTTTGCGAGTTCTGCAACTTGTTCTCTTCTTCAACGCTTTGA

Protein sequence

MDFSMRTKQGKIASHAKVQTAAPKGFNRGEDNNKSLSTVTSFLCVLRDSVERSEFGGRLSMAYGRYRRFVCYSSAVFLCEFCNLFSSSTL

Homology

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BLAST of Moc04g32890 vs. NCBI nr
Match: KAG7016373.1 (hypothetical protein SDJN02_21481, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-05
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MDFSMRTKQGKIASHAKVQTAAPKGFNRG-EDNNKSLSTVT 41
          MD+ MRTKQ KI SHAK QTA  K FNRG EDNNKSL TVT
Sbjct: 12 MDYIMRTKQRKITSHAKFQTAVLKRFNRGEEDNNKSLGTVT 52

The following BLAST results are available for this feature:

BLAST of Moc04g32890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016373.1	5.7e-05	75.61	hypothetical protein SDJN02_21481, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Moc04g32890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g32890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g32890 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g32890.1	Moc04g32890.1	mRNA