Moc04g32280 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g32280
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionSecretion protein HlyD family protein
Locationchr4: 24294213 .. 24295848 (-)
RNA-Seq ExpressionMoc04g32280
SyntenyMoc04g32280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAGCATTCCAAGTGAGATGCCCAAGATAAAAGGACCGAATTGGTACGGAAGTTTTAACATGGGAAAACCACAGAAAACACAACTATTCAAGAAAACTCAGGAGTATGTTGACTTGCAAAACTCTGCCATGGAGTGCGGTGTTTCCTGGTCTCTCCGTCAGGTTTCTACTCAACACCCTGACATTGACTTTTCCTTCCTCCCGGAGCGTTTTAGGGCCGAGCGTGACGCTCCTGACGACATGGATGACGACGACGACGAGTAATAGGGTAGCTTGAGCGAGTAGTTCTTACGGTTGACTTTTATGTGCTTTGTCACTATGTTGCTTGTATTCTTTTCTTTGGAATCATCAATTAACCCTCTTACCAGTCACTTACTGGCTTACGGCTCTAACCCTGATGGAGTTTTGTTGCTTTCTTTTCGTAGGTTTTTAACTCGTTGGTCATAGCCAATAGTTTTACACCCGCTGTTGTTTTTGTATTTTTACTCCATCTCATGTTTTAACCGTGCTAGGCCAATTGACCCGCTTCTGGTTTGGCCGTGTTGAGATTGTTTAATTGTTCTTTCCAAACGTGTCGATTAAAGTAGATTCATGCTTCGTCGCACATGACCGACGTCGAGTGATGGTCGGACCCGAGCAGTGGTCGGTCCACGAGCCGTGTTTAGTCGAAAATAAGACCTATTAACAAACATAGGCTATCTCGTAGAACCGCCGACTAATGTAGATCTGCGCCCGTTCGCACTTGGTCGACGCCAACAGTGGTCGGACCCGAGCAGTGGTCGGTCCCGAGCCCTGCTCGGCCTGCCCTGTATAGCTGGTTTTACCGTCACCATGTAGGATTGGATTTACCAAGCATAGGCTATCTCGTAGAACCGCCGACTAATGTAGATCTGCGCCCGTTCGCACTTGGTCGACGCCAACAGTGGTCGGACCCGAGCAGTGGTCGGTCCCGAGCCCTGCTCGGCCTTCCCTGTATAGCTGGTTTTACCGTCACTGTGTAGGATTGGATTTACCAAGCTTACGTCCTTGAGTAGCCGTAGTCAGTACCTGTTGCCTCCTACTCTCAATTGTATTGTTGATATCTTTTGAGAGTACGCTTGTAGACGAGGCAAAGTACTTTATAAAAAGGTCTCTTGGTATCTCGTTTTGGATTTAAGAAATACAGTTGACAGAGAATAAATGGGCACTTTATTGAACAAAAGGAATTATAATTAGAAATCTTGTTAAAAGTAGAAAACAACCATATTTGAAGGAAGAAATAAAAGGTCAACAGCCCCCCTTAGTAGAAGTTCTGTCGTTGTCCCTCATTGAGGTATAATAGCATTCCCGTGACACTCGTTGTTCTCCTTTAATTTCTCCTACCCCACCCGGTGTTGGGAACTTCATGGATTGGTGATATGTGGATGGTATCGCTCTGAGCATATGCATCGTCGGTCTTCCCAGTATTGCGTTGTAGGAGGATGTGTAGTTAACGACCAAAAAGTCCACCATCTTGGTGACACTCTTCGGCCCACTTCCGAATGTTACTGGCAACTCTATCCTCCCTTCGGGGATGATCCGTTCTCCCCCAAATCCTACCAGTGGTGCTGGACTACTCTTGAGCACCTTTTCTCCTAGATCCATAGCTTTATAG

mRNA sequence

ATGCATAGCATTCCAAGTGAGATGCCCAAGATAAAAGGACCGAATTGGTACGGAAGTTTTAACATGGGAAAACCACAGAAAACACAACTATTCAAGAAAACTCAGGAGTATGTTGACTTGCAAAACTCTGCCATGGAGTGCGGTGTTTCCTGGTCTCTCCGTCAGGTTTCTACTCAACACCCTGACATTGACTTTTCCTTCCTCCCGGAGCGTTTTAGGGCCGAGCGTGACGCTCCTGACGACATGGATGACGACGACGACGATCACTTACTGGCTTACGGCTCTAACCCTGATGGAGTTTTGTTGCTTTCTTTTCGTAGATCTGCGCCCGTTCGCACTTGGTCGACGCCAACAGTGGTCGGACCCGAGCAGTGGTCGGTCCCGAGCCCTGCTCGGCCTGCCCTGTATAGCTGGTTTTACCGTCACCATGTAGGATTGGATTTACCAAGCATAGGCTATCTCGTAGAACCGCCGACTAATGTAGATCTGCGCCCGTTCGCACTTGGTCGACGCCAACAGTGGTCGGACCCGAGCAGTGGTCGGTCCCGAGCCCTGCTCGGCCTTCCCTGTATAGCTGGTTTTACCTTAACGACCAAAAAGTCCACCATCTTGGTGACACTCTTCGGCCCACTTCCGAATGTTACTGGCAACTCTATCCTCCCTTCGGGGATGATCCGTTCTCCCCCAAATCCTACCAGTGGTGCTGGACTACTCTTGAGCACCTTTTCTCCTAGATCCATAGCTTTATAG

Coding sequence (CDS)

ATGCATAGCATTCCAAGTGAGATGCCCAAGATAAAAGGACCGAATTGGTACGGAAGTTTTAACATGGGAAAACCACAGAAAACACAACTATTCAAGAAAACTCAGGAGTATGTTGACTTGCAAAACTCTGCCATGGAGTGCGGTGTTTCCTGGTCTCTCCGTCAGGTTTCTACTCAACACCCTGACATTGACTTTTCCTTCCTCCCGGAGCGTTTTAGGGCCGAGCGTGACGCTCCTGACGACATGGATGACGACGACGACGATCACTTACTGGCTTACGGCTCTAACCCTGATGGAGTTTTGTTGCTTTCTTTTCGTAGATCTGCGCCCGTTCGCACTTGGTCGACGCCAACAGTGGTCGGACCCGAGCAGTGGTCGGTCCCGAGCCCTGCTCGGCCTGCCCTGTATAGCTGGTTTTACCGTCACCATGTAGGATTGGATTTACCAAGCATAGGCTATCTCGTAGAACCGCCGACTAATGTAGATCTGCGCCCGTTCGCACTTGGTCGACGCCAACAGTGGTCGGACCCGAGCAGTGGTCGGTCCCGAGCCCTGCTCGGCCTTCCCTGTATAGCTGGTTTTACCTTAACGACCAAAAAGTCCACCATCTTGGTGACACTCTTCGGCCCACTTCCGAATGTTACTGGCAACTCTATCCTCCCTTCGGGGATGATCCGTTCTCCCCCAAATCCTACCAGTGGTGCTGGACTACTCTTGAGCACCTTTTCTCCTAGATCCATAGCTTTATAG

Protein sequence

MHSIPSEMPKIKGPNWYGSFNMGKPQKTQLFKKTQEYVDLQNSAMECGVSWSLRQVSTQHPDIDFSFLPERFRAERDAPDDMDDDDDDHLLAYGSNPDGVLLLSFRRSAPVRTWSTPTVVGPEQWSVPSPARPALYSWFYRHHVGLDLPSIGYLVEPPTNVDLRPFALGRRQQWSDPSSGRSRALLGLPCIAGFTLTTKKSTILVTLFGPLPNVTGNSILPSGMIRSPPNPTSGAGLLLSTFSPRSIAL
Homology
[Close]
BLAST of Moc04g32280 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 112.5 bits (280), Expect = 5.4e-21
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0 

Query: 31   FKKTQEYVDLQNSAMECGVSWSLRQVSTQHPDIDFSFLPERFRAERDAPDDMDDDDDD 89
            FKKTQEYVDLQNSAMECGV W LRQVSTQHPDID SFLPERFRAERDAP+DMDDDDD+
Sbjct: 1199 FKKTQEYVDLQNSAMECGVFWFLRQVSTQHPDIDISFLPERFRAERDAPNDMDDDDDE 1256

[Close]
BLAST of Moc04g32280 vs. NCBI nr
Match: TYK01274.1 (Secretion protein HlyD family protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-07
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 31  FKKTQEYVDLQNSAMECGVSWSLRQVSTQHPDIDFSFLPERFRAERDAPDDMDD 85
           F KT+E+V +QN  MECGV+WS+RQ S +HP IDFSFLP RF+A  D  ++ DD
Sbjct: 235 FSKTEEFVVMQNKIMECGVNWSVRQASIEHPGIDFSFLPIRFKAACD--NNFDD 286

[Close]
BLAST of Moc04g32280 vs. NCBI nr
Match: XP_031737089.1 (uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-07
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 31  FKKTQEYVDLQNSAMECGVSWSLRQVSTQHPDIDFSFLPERFRAERDAPDDMDD 85
           F KT+E+V +QN  MECGV+WS+RQ S +HP IDFSFLP RF+A  D  ++ DD
Sbjct: 274 FSKTEEFVVMQNKIMECGVNWSVRQASIEHPGIDFSFLPIRFKAACD--NNFDD 325

[Close]
BLAST of Moc04g32280 vs. NCBI nr
Match: XP_031737075.1 (uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-07
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 31  FKKTQEYVDLQNSAMECGVSWSLRQVSTQHPDIDFSFLPERFRAERDAPDDMDD 85
           F KT+E+V +QN  MECGV+WS+RQ S +HP IDFSFLP RF+A  D  ++ DD
Sbjct: 305 FSKTEEFVVMQNKIMECGVNWSVRQASIEHPGIDFSFLPIRFKAACD--NNFDD 356

[Close]
BLAST of Moc04g32280 vs. NCBI nr
Match: XP_031737083.1 (uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-07
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 31  FKKTQEYVDLQNSAMECGVSWSLRQVSTQHPDIDFSFLPERFRAERDAPDDMDD 85
           F KT+E+V +QN  MECGV+WS+RQ S +HP IDFSFLP RF+A  D  ++ DD
Sbjct: 291 FSKTEEFVVMQNKIMECGVNWSVRQASIEHPGIDFSFLPIRFKAACD--NNFDD 342

[Close]
BLAST of Moc04g32280 vs. ExPASy TrEMBL
Match: A0A6J1DSS1 (uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023586 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.6e-21
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0 

Query: 31   FKKTQEYVDLQNSAMECGVSWSLRQVSTQHPDIDFSFLPERFRAERDAPDDMDDDDDD 89
            FKKTQEYVDLQNSAMECGV W LRQVSTQHPDID SFLPERFRAERDAP+DMDDDDD+
Sbjct: 1199 FKKTQEYVDLQNSAMECGVFWFLRQVSTQHPDIDISFLPERFRAERDAPNDMDDDDDE 1256

[Close]
BLAST of Moc04g32280 vs. ExPASy TrEMBL
Match: A0A5A7SSF9 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00750 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.7e-08
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 31  FKKTQEYVDLQNSAMECGVSWSLRQVSTQHPDIDFSFLPERFRAERDAPDDMDD 85
           F KT+E+V +QN  MECGV+WS+RQ S +HP IDFSFLP RF+A  D  ++ DD
Sbjct: 286 FSKTEEFVVMQNKIMECGVNWSVRQASIEHPGIDFSFLPIRFKAACD--NNFDD 337

[Close]
BLAST of Moc04g32280 vs. ExPASy TrEMBL
Match: A0A5D3BQ22 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00610 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.7e-08
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 31  FKKTQEYVDLQNSAMECGVSWSLRQVSTQHPDIDFSFLPERFRAERDAPDDMDD 85
           F KT+E+V +QN  MECGV+WS+RQ S +HP IDFSFLP RF+A  D  ++ DD
Sbjct: 235 FSKTEEFVVMQNKIMECGVNWSVRQASIEHPGIDFSFLPIRFKAACD--NNFDD 286

[Close]
BLAST of Moc04g32280 vs. ExPASy TrEMBL
Match: A0A0A0LXX2 (Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.7e-08
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 31  FKKTQEYVDLQNSAMECGVSWSLRQVSTQHPDIDFSFLPERFRAERDAPDDMDD 85
           F KT+E+V +QN  MECGV+WS+RQ S +HP IDFSFLP RF+A  D  ++ DD
Sbjct: 67  FSKTEEFVVMQNKIMECGVNWSVRQASIEHPGIDFSFLPIRFKAACD--NNFDD 118

[Close]
BLAST of Moc04g32280 vs. ExPASy TrEMBL
Match: A0A1S3C5B2 (uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.7e-08
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 31  FKKTQEYVDLQNSAMECGVSWSLRQVSTQHPDIDFSFLPERFRAERDAPDDMDD 85
           F KT+E+V +QN  MECGV+WS+RQ S +HP IDFSFLP RF+A  D  ++ DD
Sbjct: 296 FSKTEEFVVMQNKIMECGVNWSVRQASIEHPGIDFSFLPIRFKAACD--NNFDD 347

The following BLAST results are available for this feature:
BLAST of Moc04g32280 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156747.15.4e-2191.38uncharacterized protein LOC111023586 [Momordica charantia][more]
TYK01274.11.2e-0759.26Secretion protein HlyD family protein [Cucumis melo var. makuwa][more]
XP_031737089.11.2e-0759.26uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus][more]
XP_031737075.11.2e-0759.26uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus][more]
XP_031737083.11.2e-0759.26uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus][more]
BLAST of Moc04g32280 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc04g32280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DSS12.6e-2191.38uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5A7SSF95.7e-0859.26Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3BQ225.7e-0859.26Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A0A0LXX25.7e-0859.26Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250... [more]
A0A1S3C5B25.7e-0859.26uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Moc04g32280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g32280.1Moc04g32280.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding