Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCCCCTCCGAGAAGAAAAGAAATTCCACTGAATGGCCCCCGCCCCGCCGCCCTCTCCGTCGCCAAAGACTCTCTAAAGATCAAGAAGCCGCCGCTTCCGCCGTCCCGTGCCCTCCAACTCCGCCACCACCACCAGCAACGCCGGCAACCGCCCCTCGTAATCTACGAACTCTCCCCACAGGTTAAGAACGTCCCCGCCGCTGACTTTATGGCCTACGTCCAACAACAAACCGGCTACCACCCCTCCGCCGCCGCCGCCGCTTCTACTTCCTCCGTCGACGTCACCGAACCCGAACCCACGACGGCGCCTCATTCTCCGCCGGGGATCCTCTCCCCCACCCCCACTTCCCTGCCATCCATTTCCCCCAATATTTTCACGCCGACGCCGACACCGCCGCCGCCGCCGCCGGATGATGTAATTTCTTATACGTGGCGTACTGTGGAACCGCCCCCTCTTCCCACGTTCAATCAAAATCCTGTTCATCTTCCTTATGGTTTACCCAATTTTTCACCCCAAGATTTCTTCCACGACAACTCATTCCCGGATAACTTCCCATAA
mRNA sequence
ATGGGTTCCCCTCCGAGAAGAAAAGAAATTCCACTGAATGGCCCCCGCCCCGCCGCCCTCTCCGTCGCCAAAGACTCTCTAAAGATCAAGAAGCCGCCGCTTCCGCCGTCCCGTGCCCTCCAACTCCGCCACCACCACCAGCAACGCCGGCAACCGCCCCTCGTAATCTACGAACTCTCCCCACAGGTTAAGAACGTCCCCGCCGCTGACTTTATGGCCTACGTCCAACAACAAACCGGCTACCACCCCTCCGCCGCCGCCGCCGCTTCTACTTCCTCCGTCGACGTCACCGAACCCGAACCCACGACGGCGCCTCATTCTCCGCCGGGGATCCTCTCCCCCACCCCCACTTCCCTGCCATCCATTTCCCCCAATATTTTCACGCCGACGCCGACACCGCCGCCGCCGCCGCCGGATGATGTAATTTCTTATACGTGGCGTACTGTGGAACCGCCCCCTCTTCCCACGTTCAATCAAAATCCTGTTCATCTTCCTTATGGTTTACCCAATTTTTCACCCCAAGATTTCTTCCACGACAACTCATTCCCGGATAACTTCCCATAA
Coding sequence (CDS)
ATGGGTTCCCCTCCGAGAAGAAAAGAAATTCCACTGAATGGCCCCCGCCCCGCCGCCCTCTCCGTCGCCAAAGACTCTCTAAAGATCAAGAAGCCGCCGCTTCCGCCGTCCCGTGCCCTCCAACTCCGCCACCACCACCAGCAACGCCGGCAACCGCCCCTCGTAATCTACGAACTCTCCCCACAGGTTAAGAACGTCCCCGCCGCTGACTTTATGGCCTACGTCCAACAACAAACCGGCTACCACCCCTCCGCCGCCGCCGCCGCTTCTACTTCCTCCGTCGACGTCACCGAACCCGAACCCACGACGGCGCCTCATTCTCCGCCGGGGATCCTCTCCCCCACCCCCACTTCCCTGCCATCCATTTCCCCCAATATTTTCACGCCGACGCCGACACCGCCGCCGCCGCCGCCGGATGATGTAATTTCTTATACGTGGCGTACTGTGGAACCGCCCCCTCTTCCCACGTTCAATCAAAATCCTGTTCATCTTCCTTATGGTTTACCCAATTTTTCACCCCAAGATTTCTTCCACGACAACTCATTCCCGGATAACTTCCCATAA
Protein sequence
MGSPPRRKEIPLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHHQQRRQPPLVIYELSPQVKNVPAADFMAYVQQQTGYHPSAAAAASTSSVDVTEPEPTTAPHSPPGILSPTPTSLPSISPNIFTPTPTPPPPPPDDVISYTWRTVEPPPLPTFNQNPVHLPYGLPNFSPQDFFHDNSFPDNFP
Homology
BLAST of Moc04g32030 vs. NCBI nr
Match:
XP_022141658.1 (protein MKS1-like [Momordica charantia])
HSP 1 Score: 369.4 bits (947), Expect = 1.8e-98
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query: 1 MGSPPRRKEIPLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHHQQRRQPPLVIYELS 60
MGSPPRRKEIPLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHHQQRRQPPLVIYELS
Sbjct: 1 MGSPPRRKEIPLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHHQQRRQPPLVIYELS 60
Query: 61 PQVKNVPAADFMAYVQQQTGYHPSAAAAASTSSVDVTEPEPTTAPHSPPGILSPTPTSLP 120
PQVKNVPAADFMAYVQQQTGYHPSAAAAASTSSVDVTEPEPTTAPHSPPGILSPTPTSLP
Sbjct: 61 PQVKNVPAADFMAYVQQQTGYHPSAAAAASTSSVDVTEPEPTTAPHSPPGILSPTPTSLP 120
Query: 121 SISPNIFTPTPTPPPPPPDDVISYTWRTVEPPPLPTFNQNPVHLPYGLPNFSPQDFFHDN 180
SISPNIFTPTPTPPPPPPDDVISYTWRTVEPPPLPTFNQNPVHLPYGLPNFSPQDFFHDN
Sbjct: 121 SISPNIFTPTPTPPPPPPDDVISYTWRTVEPPPLPTFNQNPVHLPYGLPNFSPQDFFHDN 180
Query: 181 SFPDNFP 188
SFPDNFP
Sbjct: 181 SFPDNFP 187
BLAST of Moc04g32030 vs. NCBI nr
Match:
KAF7834171.1 (protein MKS1 [Senna tora])
HSP 1 Score: 82.4 bits (202), Expect = 4.5e-12
Identity = 63/153 (41.18%), Postives = 83/153 (54.25%), Query Frame = 0
Query: 3 SPPRRKEIPLNGPRPAALSVAKDSLKIKKPPLPPS---RALQLRHHHQQRRQP-PLVIYE 62
+PP +E+ L GPRP+ LSV+KDS KI+KPPLPP A R H QQ+ P PL+IY
Sbjct: 12 TPPSSRELQLQGPRPSPLSVSKDSHKIRKPPLPPHAGYAAGGFRQHQQQQDPPQPLIIYS 71
Query: 63 LSPQVKNVPAADFMAYVQQQTGYHPS------AAAAASTSSVDVTEPEPTTAPHSPP--- 122
+SP+ NVP DFM VQ+ TG S + AA +S++ T P S
Sbjct: 72 VSPKAINVPVDDFMKVVQRLTGASSSPSRSGDVSPAARLASIEKTSPTEKERFQSGDEMM 131
Query: 123 -------------GILSPTPTSLPSISPNIFTP 130
GILSP P +LP+IS ++F+P
Sbjct: 132 MSMLDGVEVSQFHGILSPAPATLPTISSDLFSP 164
BLAST of Moc04g32030 vs. NCBI nr
Match:
XP_006854610.1 (protein MKS1 [Amborella trichopoda] >ERN16077.1 hypothetical protein AMTR_s00030p00143350 [Amborella trichopoda])
HSP 1 Score: 80.9 bits (198), Expect = 1.3e-11
Identity = 64/146 (43.84%), Postives = 80/146 (54.79%), Query Frame = 0
Query: 2 GSPPRRKEIPLNGPRPAALSVAKDSLKIKKPP--LPPSRALQLRHHHQQRRQPPLVIYEL 61
G PPR++ L GPRPA L V KDS KIKKPP LPP +L L H Q R PP++IY +
Sbjct: 9 GKPPRKE---LQGPRPAPLKVRKDSHKIKKPPTGLPPQNSLPLNHQTQNR--PPVIIYTV 68
Query: 62 SPQVKNVPAADFMAYVQQQTGYHPSAAAAASTS-------------SVDVTEPEPTTAPH 121
SP+V + A+DFM VQ TG S+ + + S + E P
Sbjct: 69 SPKVIHTKASDFMTLVQSLTGVSSSSVEVSGINGGFPTDNFVGNEFSSGIPAIEELNMPA 128
Query: 122 S-PPGILSPTPTSLPSISPNIFTPTP 132
S GILSP P+SLP ISP+ F P+P
Sbjct: 129 SGGHGILSPLPSSLPPISPSWFLPSP 149
BLAST of Moc04g32030 vs. NCBI nr
Match:
XP_028766054.1 (protein MKS1 [Prosopis alba])
HSP 1 Score: 79.3 bits (194), Expect = 3.8e-11
Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 0
Query: 4 PPRRKEIPLNGPRPAALSVAKDSLKIKKPPLPP----SRALQLRHHHQQRRQPPLVIYEL 63
PP R+E+ L GPRP+ LSV+K+S KI+KPPLPP A RH QQ + P++IY +
Sbjct: 14 PPSRRELQLQGPRPSPLSVSKESHKIRKPPLPPHPHHPAAGPSRHQQQQPQPQPVIIYSV 73
Query: 64 SPQVKNVPAADFMAYVQQQTG-YHPSA-----AAAASTSSVDVTEPEPTTAPHSPP---- 123
SP+V +VP DFM VQ+ TG PS+ + AA +S++ T P +
Sbjct: 74 SPKVIHVPVDDFMKVVQRLTGPSSPSSRSGDVSPAARLASIEKTSPSEKERFQNGDEMMD 133
Query: 124 ------------GILSPTPTSLPSISPNIFTPTPTP 134
GILSP P S+P IS IF+P P
Sbjct: 134 DLLEGVEVSQFHGILSPAPGSMPGISSEIFSPATDP 169
BLAST of Moc04g32030 vs. NCBI nr
Match:
XP_027336856.1 (protein MKS1-like [Abrus precatorius])
HSP 1 Score: 79.0 bits (193), Expect = 5.0e-11
Identity = 61/159 (38.36%), Postives = 84/159 (52.83%), Query Frame = 0
Query: 2 GSPPRRKEIPLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHH---QQRRQPPLVIYE 61
G+PP +KE+ + GPRP L V+K S KIKKPPLPP + HHH +Q+++ P++IY
Sbjct: 10 GTPPSKKELQIQGPRPPPLKVSKVSHKIKKPPLPPPP--PIAHHHAPPEQQQREPVIIYS 69
Query: 62 LSPQVKNVPAADFMAYVQQQTGY---HPSA-----AAAASTSSVDVTEPEPTTAPH---- 121
+SP+V +V DFM VQ+ TG PSA + AA +S++ T P
Sbjct: 70 VSPKVIHVTPGDFMDVVQRLTGASSDEPSAGRGDLSPAARLASIEKTSPSEKERERVFQS 129
Query: 122 ----------------SPPGILSPTPTSLPSISPNIFTP 130
PGILSP P +LP I P +F+P
Sbjct: 130 GDDDMMLMLGEGVEMGQFPGILSPEPGTLPPIPPEVFSP 166
BLAST of Moc04g32030 vs. ExPASy Swiss-Prot
Match:
Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)
HSP 1 Score: 54.3 bits (129), Expect = 1.7e-06
Identity = 49/154 (31.82%), Postives = 74/154 (48.05%), Query Frame = 0
Query: 6 RRKEIPLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHHQQRRQPPLVIYELSPQVKN 65
+++++ + GPRP+ LSV KDS KIKKPP P+ + P+VIY +SP+V +
Sbjct: 18 QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77
Query: 66 VPAADFMAYVQQQTG--------------YHPSAAAAASTSSVDVTEPEPTTAPHS---- 125
A++FM VQ+ TG P+A A++ ++ EP +
Sbjct: 78 ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137
Query: 126 ------------PPGILSPTPTSLPSISPNIFTP 130
PGILSP+P LP+ S IF+P
Sbjct: 138 TAMEEAAEFGGYAPGILSPSPALLPTASTGIFSP 171
BLAST of Moc04g32030 vs. ExPASy TrEMBL
Match:
A0A6J1CL52 (protein MKS1-like OS=Momordica charantia OX=3673 GN=LOC111011960 PE=4 SV=1)
HSP 1 Score: 369.4 bits (947), Expect = 8.9e-99
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query: 1 MGSPPRRKEIPLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHHQQRRQPPLVIYELS 60
MGSPPRRKEIPLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHHQQRRQPPLVIYELS
Sbjct: 1 MGSPPRRKEIPLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHHQQRRQPPLVIYELS 60
Query: 61 PQVKNVPAADFMAYVQQQTGYHPSAAAAASTSSVDVTEPEPTTAPHSPPGILSPTPTSLP 120
PQVKNVPAADFMAYVQQQTGYHPSAAAAASTSSVDVTEPEPTTAPHSPPGILSPTPTSLP
Sbjct: 61 PQVKNVPAADFMAYVQQQTGYHPSAAAAASTSSVDVTEPEPTTAPHSPPGILSPTPTSLP 120
Query: 121 SISPNIFTPTPTPPPPPPDDVISYTWRTVEPPPLPTFNQNPVHLPYGLPNFSPQDFFHDN 180
SISPNIFTPTPTPPPPPPDDVISYTWRTVEPPPLPTFNQNPVHLPYGLPNFSPQDFFHDN
Sbjct: 121 SISPNIFTPTPTPPPPPPDDVISYTWRTVEPPPLPTFNQNPVHLPYGLPNFSPQDFFHDN 180
Query: 181 SFPDNFP 188
SFPDNFP
Sbjct: 181 SFPDNFP 187
BLAST of Moc04g32030 vs. ExPASy TrEMBL
Match:
U5D3U9 (VQ domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00030p00143350 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 6.3e-12
Identity = 64/146 (43.84%), Postives = 80/146 (54.79%), Query Frame = 0
Query: 2 GSPPRRKEIPLNGPRPAALSVAKDSLKIKKPP--LPPSRALQLRHHHQQRRQPPLVIYEL 61
G PPR++ L GPRPA L V KDS KIKKPP LPP +L L H Q R PP++IY +
Sbjct: 9 GKPPRKE---LQGPRPAPLKVRKDSHKIKKPPTGLPPQNSLPLNHQTQNR--PPVIIYTV 68
Query: 62 SPQVKNVPAADFMAYVQQQTGYHPSAAAAASTS-------------SVDVTEPEPTTAPH 121
SP+V + A+DFM VQ TG S+ + + S + E P
Sbjct: 69 SPKVIHTKASDFMTLVQSLTGVSSSSVEVSGINGGFPTDNFVGNEFSSGIPAIEELNMPA 128
Query: 122 S-PPGILSPTPTSLPSISPNIFTPTP 132
S GILSP P+SLP ISP+ F P+P
Sbjct: 129 SGGHGILSPLPSSLPPISPSWFLPSP 149
BLAST of Moc04g32030 vs. ExPASy TrEMBL
Match:
A0A1U7ZGJ3 (protein MKS1 OS=Nelumbo nucifera OX=4432 GN=LOC104590332 PE=4 SV=1)
HSP 1 Score: 74.3 bits (181), Expect = 5.9e-10
Identity = 66/173 (38.15%), Postives = 86/173 (49.71%), Query Frame = 0
Query: 2 GSPPRRKEIPLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHHQQRRQPPLVIYELSP 61
G P R+E L GPRP L V+KDS KIKKPP+PP + + Q R PP++IY +SP
Sbjct: 46 GRPSPRRE--LQGPRPTPLKVSKDSYKIKKPPVPPQPSHPPQPPAQNR--PPVIIYAVSP 105
Query: 62 QVKNVPAADFMAYVQQQTGYHPS------AAAAASTSSVDVT-----------EPEPTTA 121
+V + A++FM VQ+ TG P+ A A AS+S+ D T + T+
Sbjct: 106 KVIHTDASEFMTLVQRLTGPSPTSSDASDAGAGASSSAFDTTCAISPAARFAAIEKTNTS 165
Query: 122 P------------------------HSPPGILSPTPTSLPSISPNIFTPTPTP 134
P S PGILSP P+SLP ISPN F+P P
Sbjct: 166 PDKSRRAVDLDMAHGVEMGANVERTSSIPGILSPLPSSLPPISPNFFSPPSDP 214
BLAST of Moc04g32030 vs. ExPASy TrEMBL
Match:
I1KTG3 (VQ domain-containing protein OS=Glycine max OX=3847 GN=100807275 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 63/153 (41.18%), Postives = 81/153 (52.94%), Query Frame = 0
Query: 3 SPPRRKEIPLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHHQQRRQP----PLVIYE 62
SPP +KE+ L G RP L V+KDS KI+KPPLPP+ HQ P P++IY
Sbjct: 15 SPPGKKELQLQGTRPPPLRVSKDSHKIRKPPLPPTA-------HQPAALPEHRKPVIIYA 74
Query: 63 LSPQVKNVPAADFMAYVQQQTGYHPSA---AAAASTSSVDVTEPEPTTAPHSP------- 122
+SP+V +VPA DFM VQ+ TG PS+ + AA +S++ T P HS
Sbjct: 75 VSPKVLHVPAGDFMNVVQRLTG--PSSGDVSPAARLASIERTSPSEREKVHSEDNDVKLM 134
Query: 123 ---------PGILSPTPTSLPSISPNIFTPTPT 133
PGILS P +LP ISP F+ T
Sbjct: 135 LEGVEVGQFPGILS--PATLPPISPGFFSEPQT 156
BLAST of Moc04g32030 vs. ExPASy TrEMBL
Match:
A0A445JEU9 (Protein MKS1 OS=Glycine soja OX=3848 GN=D0Y65_020585 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 63/153 (41.18%), Postives = 81/153 (52.94%), Query Frame = 0
Query: 3 SPPRRKEIPLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHHQQRRQP----PLVIYE 62
SPP +KE+ L G RP L V+KDS KI+KPPLPP+ HQ P P++IY
Sbjct: 15 SPPGKKELQLQGTRPPPLRVSKDSHKIRKPPLPPTA-------HQPAALPEHRKPVIIYA 74
Query: 63 LSPQVKNVPAADFMAYVQQQTGYHPSA---AAAASTSSVDVTEPEPTTAPHSP------- 122
+SP+V +VPA DFM VQ+ TG PS+ + AA +S++ T P HS
Sbjct: 75 VSPKVLHVPAGDFMNVVQRLTG--PSSGDVSPAARLASIERTSPSEREKVHSEDNDVKLM 134
Query: 123 ---------PGILSPTPTSLPSISPNIFTPTPT 133
PGILS P +LP ISP F+ T
Sbjct: 135 LEGVEVGQFPGILS--PATLPPISPGFFSEPQT 156
BLAST of Moc04g32030 vs. TAIR 10
Match:
AT3G18690.1 (MAP kinase substrate 1 )
HSP 1 Score: 54.3 bits (129), Expect = 1.2e-07
Identity = 49/154 (31.82%), Postives = 74/154 (48.05%), Query Frame = 0
Query: 6 RRKEIPLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHHQQRRQPPLVIYELSPQVKN 65
+++++ + GPRP+ LSV KDS KIKKPP P+ + P+VIY +SP+V +
Sbjct: 18 QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77
Query: 66 VPAADFMAYVQQQTG--------------YHPSAAAAASTSSVDVTEPEPTTAPHS---- 125
A++FM VQ+ TG P+A A++ ++ EP +
Sbjct: 78 ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137
Query: 126 ------------PPGILSPTPTSLPSISPNIFTP 130
PGILSP+P LP+ S IF+P
Sbjct: 138 TAMEEAAEFGGYAPGILSPSPALLPTASTGIFSP 171
BLAST of Moc04g32030 vs. TAIR 10
Match:
AT3G18360.1 (VQ motif-containing protein )
HSP 1 Score: 44.3 bits (103), Expect = 1.3e-04
Identity = 28/70 (40.00%), Postives = 37/70 (52.86%), Query Frame = 0
Query: 11 PLNGPRPAALSVAKDSLKIKKPPLPPSRALQLRHHHQQRRQPPLVIYELSPQVKNVPAAD 70
P P P L V KDS IKKPP P S + + H P++IY +P++ + D
Sbjct: 37 PSPSPSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRH------PVIIYTHTPRIIHTNPKD 96
Query: 71 FMAYVQQQTG 81
FMA VQ+ TG
Sbjct: 97 FMALVQKLTG 100
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q8LGD5 | 1.7e-06 | 31.82 | Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2 | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1CL52 | 8.9e-99 | 100.00 | protein MKS1-like OS=Momordica charantia OX=3673 GN=LOC111011960 PE=4 SV=1 | [more] |
U5D3U9 | 6.3e-12 | 43.84 | VQ domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00030p001... | [more] |
A0A1U7ZGJ3 | 5.9e-10 | 38.15 | protein MKS1 OS=Nelumbo nucifera OX=4432 GN=LOC104590332 PE=4 SV=1 | [more] |
I1KTG3 | 1.0e-09 | 41.18 | VQ domain-containing protein OS=Glycine max OX=3847 GN=100807275 PE=4 SV=1 | [more] |
A0A445JEU9 | 1.0e-09 | 41.18 | Protein MKS1 OS=Glycine soja OX=3848 GN=D0Y65_020585 PE=4 SV=1 | [more] |